RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 C2orf69Q8N8R5 385 aa20.55■□□□□ 0.88
HDAC6-235ENST00000495515 OSBPL5Q9H0X9 879 aaPredicted RBP20.55■□□□□ 0.88
HDAC6-235ENST00000495515 DDX4Q9NQI0 724 aaKnown RBP20.55■□□□□ 0.88
HDAC6-235ENST00000495515 GPAA1O43292 621 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 PPP1R12BO60237 982 aaPredicted RBP20.54■□□□□ 0.88
HDAC6-235ENST00000495515 FKBP1BP68106 108 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 NBPF12Q5TAG4 269 aaPredicted RBP20.54■□□□□ 0.88
HDAC6-235ENST00000495515 DLK2Q6UY11 383 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 SKAP1Q86WV1 359 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 TEPSINQ96N21 525 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 DHX36Q9H2U1 1008 aaKnown RBP20.54■□□□□ 0.88
HDAC6-235ENST00000495515 SLC4A4Q9Y6R1 1079 aa20.54■□□□□ 0.88
HDAC6-235ENST00000495515 FLT1P17948 1338 aa20.53■□□□□ 0.88
HDAC6-235ENST00000495515 MFAP1P55081 439 aaKnown RBP20.53■□□□□ 0.88
HDAC6-235ENST00000495515 HTRA3P83110 453 aa20.53■□□□□ 0.88
HDAC6-235ENST00000495515 FMR1Q06787 632 aaKnown RBP eCLIP20.53■□□□□ 0.88
HDAC6-235ENST00000495515 MCMDC2Q4G0Z9 681 aa20.53■□□□□ 0.88
HDAC6-235ENST00000495515 DCAF15Q66K64 600 aa20.53■□□□□ 0.88
HDAC6-235ENST00000495515 STRBPQ96SI9 672 aaKnown RBP20.53■□□□□ 0.88
HDAC6-235ENST00000495515 GBA2Q9HCG7 927 aaPredicted RBP20.53■□□□□ 0.88
HDAC6-235ENST00000495515 ATP8A2Q9NTI2 1148 aa20.53■□□□□ 0.88
HDAC6-235ENST00000495515 COL2A1P02458 1487 aaPredicted RBP20.52■□□□□ 0.88
HDAC6-235ENST00000495515 ATRNL1Q5VV63 1379 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 M0R2C6 588 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 NMIQ13287 307 aaPredicted RBP20.52■□□□□ 0.88
HDAC6-235ENST00000495515 TTLL12Q14166 644 aaPredicted RBP20.52■□□□□ 0.88
HDAC6-235ENST00000495515 CST9Q5W186 159 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 ARMC9Q7Z3E5 817 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 ZFPM1Q8IX07 1006 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 AMOTL1Q8IY63 956 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 RUFY2Q8WXA3 655 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 CSRNP1Q96S65 589 aa20.52■□□□□ 0.88
HDAC6-235ENST00000495515 HLA-DOAP06340 250 aa20.51■□□□□ 0.87
HDAC6-235ENST00000495515 DNAJC5GQ8N7S2 189 aa20.51■□□□□ 0.87
HDAC6-235ENST00000495515 FAM227BQ96M60 508 aa20.51■□□□□ 0.87
HDAC6-235ENST00000495515 SEC62Q99442 399 aaKnown RBP20.51■□□□□ 0.87
HDAC6-235ENST00000495515 NACAP1Q9BZK3 213 aa20.51■□□□□ 0.87
HDAC6-235ENST00000495515 CREBZFQ9NS37 354 aa20.51■□□□□ 0.87
HDAC6-235ENST00000495515 GIMAP6Q6P9H5 292 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 CWC27Q6UX04 472 aaKnown RBP20.5■□□□□ 0.87
HDAC6-235ENST00000495515 TTC6Q86TZ1 520 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 SDR42E1Q8WUS8 393 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 DCP1AQ9NPI6 582 aaPredicted RBP20.5■□□□□ 0.87
HDAC6-235ENST00000495515 MCM9Q9NXL9 1143 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 PI4KBQ9UBF8 816 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 ABT1Q9ULW3 272 aaKnown RBP20.5■□□□□ 0.87
HDAC6-235ENST00000495515 MYH7P12883 1935 aa20.5■□□□□ 0.87
HDAC6-235ENST00000495515 POLR2AP24928 1970 aaKnown RBP20.5■□□□□ 0.87
HDAC6-235ENST00000495515 A0A0D9SFI3 127 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 DDTLA6NHG4 134 aaPredicted RBP20.49■□□□□ 0.87
HDAC6-235ENST00000495515 PRKAB2O43741 272 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 APPP05067 770 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 IREB2P48200 963 aaKnown RBP20.49■□□□□ 0.87
HDAC6-235ENST00000495515 SH3BP5LQ7L8J4 393 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 CDAN1Q8IWY9 1227 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 TRIM34Q9BYJ4 488 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 SAP30BPQ9UHR5 308 aaKnown RBP20.49■□□□□ 0.87
HDAC6-235ENST00000495515 GTF3C3Q9Y5Q9 886 aa20.49■□□□□ 0.87
HDAC6-235ENST00000495515 PATL2C9JE40 543 aaKnown RBP20.48■□□□□ 0.87
HDAC6-235ENST00000495515 POLR3DP05423 398 aaPredicted RBP20.48■□□□□ 0.87
HDAC6-235ENST00000495515 PRKG1Q13976 671 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 CASC1Q6TDU7 716 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 FOXP4Q8IVH2 680 aaPredicted RBP20.48■□□□□ 0.87
HDAC6-235ENST00000495515 KLRG1Q96E93 195 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 ZNF341Q9BYN7 854 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 MKRN1Q9UHC7 482 aaKnown RBP20.48■□□□□ 0.87
HDAC6-235ENST00000495515 PALD1Q9ULE6 856 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 ANGEL1Q9UNK9 670 aaKnown RBP20.48■□□□□ 0.87
HDAC6-235ENST00000495515 CCDC171Q6TFL3 1326 aa20.48■□□□□ 0.87
HDAC6-235ENST00000495515 UNCXA6NJT0 531 aa20.47■□□□□ 0.87
HDAC6-235ENST00000495515 CHMLP26374 656 aa20.47■□□□□ 0.87
HDAC6-235ENST00000495515 HERC5Q9UII4 1024 aaKnown RBP20.47■□□□□ 0.87
HDAC6-235ENST00000495515 TLL2Q9Y6L7 1015 aa20.47■□□□□ 0.87
HDAC6-235ENST00000495515 RAD50Q92878 1312 aa20.47■□□□□ 0.87
HDAC6-235ENST00000495515 GSG1L2A8MUP6 293 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 TBC1D12O60347 775 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 TDO2P48775 406 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 HUNKP57058 714 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 MAP3K11Q16584 847 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 CCDC129Q6ZRS4 1044 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 MIGA2Q7L4E1 593 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 SAPCD2Q86UD0 394 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 CRACR2BQ8N4Y2 399 aaPredicted RBP20.46■□□□□ 0.87
HDAC6-235ENST00000495515 ARPP21Q9UBL0 812 aaPredicted RBP20.46■□□□□ 0.87
HDAC6-235ENST00000495515 TAOK2Q9UL54 1235 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 SSC5DA1L4H1 1573 aa20.46■□□□□ 0.87
HDAC6-235ENST00000495515 USP2O75604 605 aaPredicted RBP20.45■□□□□ 0.86
HDAC6-235ENST00000495515 NAPBQ9H115 298 aa20.45■□□□□ 0.86
HDAC6-235ENST00000495515 EHD4Q9H223 541 aa20.45■□□□□ 0.86
HDAC6-235ENST00000495515 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.45■□□□□ 0.86
HDAC6-235ENST00000495515 PAPPA2Q9BXP8 1791 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 UBE2Q2LH0YL09 131 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 CDC45O75419 566 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 MAP3K10Q02779 954 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 ANKRD13AQ8IZ07 590 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 IFNL3Q8IZI9 196 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 HHIPL1Q96JK4 782 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 SERPINB13Q9UIV8 391 aa20.44■□□□□ 0.86
HDAC6-235ENST00000495515 TRPM7Q96QT4 1865 aa20.43■□□□□ 0.86
HDAC6-235ENST00000495515 USP17L12C9JPN9 530 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms