RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 MYO1BO43795 1136 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 HSPD1P10809 573 aaKnown RBP13.32□□□□□ -0.28
HDAC4-210ENST00000493582 GGCXP38435 758 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 HAND2P61296 217 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 FAM212AQ96EL1 285 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 KCNH3Q9ULD8 1083 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 CDHR2Q9BYE9 1310 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 LRRC37A3O60309 1634 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 NRXN3Q9Y4C0 1643 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 KLF18A0A0U1RQI7 1052 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 EBAG9O00559 213 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 PIP4K2BP78356 416 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 NALCNQ8IZF0 1738 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 STK11IPQ8N1F8 1099 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 NEO1Q92859 1461 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 PANX2Q96RD6 677 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 NAPGQ99747 312 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-210ENST00000493582 HINFPQ9BQA5 517 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 DONSONQ9NYP3 566 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 MAN1B1Q9UKM7 699 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 HPCAL4Q9UM19 191 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 GOLGA8BA8MQT2 603 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 GOLIM4O00461 696 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 TTC19Q6DKK2 380 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-210ENST00000493582 PPFIBP1Q86W92 1011 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 FMN2Q9NZ56 1722 aa13.31□□□□□ -0.28
HDAC4-210ENST00000493582 HOXB7P09629 217 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 HOXC9P31274 260 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 AARSP49588 968 aaKnown RBP eCLIP13.3□□□□□ -0.282e-6■■■■■ 44.6
HDAC4-210ENST00000493582 IRAK1P51617 712 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 SLC9C2Q5TAH2 1124 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 WDR93Q6P2C0 686 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 RASGRP2Q7LDG7 609 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 GRAMD1CQ8IYS0 662 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 HPS5Q9UPZ3 1129 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 A2ML1A8K2U0 1454 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 TUBB4BP68371 445 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 PTPAQ15257 358 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 WHAMMP3Q1A5X7 153 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 RESP18Q5W5W9 173 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 MPRIPQ6WCQ1 1025 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 GSPT2Q8IYD1 628 aaKnown RBP13.3□□□□□ -0.28
HDAC4-210ENST00000493582 KBTBD3Q8NAB2 608 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 HAUS7Q99871 368 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 MYO6Q9UM54 1294 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 CASP14P31944 242 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 NLRP6P59044 892 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 STIM1Q13586 685 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 VPS37DQ86XT2 251 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 NUTM2AQ8IVF1 878 aaPredicted RBP13.3□□□□□ -0.28
HDAC4-210ENST00000493582 CCDC148Q8NFR7 591 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 BCAS4Q8TDM0 211 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 JPH2Q9BR39 696 aaPredicted RBP13.3□□□□□ -0.28
HDAC4-210ENST00000493582 FAM107BQ9H098 131 aa13.3□□□□□ -0.28
HDAC4-210ENST00000493582 HOOK1Q9UJC3 728 aaKnown RBP13.3□□□□□ -0.28
HDAC4-210ENST00000493582 ZC3H4Q9UPT8 1303 aaKnown RBP13.29□□□□□ -0.28
HDAC4-210ENST00000493582 IGKV5-2P06315 115 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 NPM1P06748 294 aaKnown RBP eCLIP13.29□□□□□ -0.28
HDAC4-210ENST00000493582 MDM2Q00987 491 aaPredicted RBP13.29□□□□□ -0.28
HDAC4-210ENST00000493582 CTCFLQ8NI51 663 aaPredicted RBP13.29□□□□□ -0.28
HDAC4-210ENST00000493582 DSCC1Q9BVC3 393 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 SAMM50Q9Y512 469 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 ENC1O14682 589 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 TUBB2AQ13885 445 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 ENOX1Q8TC92 643 aaKnown RBP13.29□□□□□ -0.28
HDAC4-210ENST00000493582 TUBB2BQ9BVA1 445 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 VIPAS39Q9H9C1 493 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 HDAC6Q9UBN7 1215 aa13.29□□□□□ -0.28
HDAC4-210ENST00000493582 LAMA4Q16363 1823 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 PPP6R2O75170 966 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 JMYQ8N9B5 988 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 ROBO2Q9HCK4 1378 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 A0A1B0GTH6 734 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 AGPSO00116 658 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 INPP5BP32019 993 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 FXR1P51114 621 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC4-210ENST00000493582 STX17P56962 302 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 FAM76AQ8TAV0 307 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 COG1Q8WTW3 980 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 CEMIPQ8WUJ3 1361 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 SRGAP2O75044 1071 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 TUBBP07437 444 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 MYBL2P10244 700 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 RXRAP19793 462 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 POSTNQ15063 836 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 KLHL10Q6JEL2 608 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 NGDNQ8NEJ9 315 aaKnown RBP13.28□□□□□ -0.28
HDAC4-210ENST00000493582 MAP3K14Q99558 947 aa13.28□□□□□ -0.28
HDAC4-210ENST00000493582 SH3TC1Q8TE82 1336 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 GOLGA6CA6NDK9 693 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 PRC1O43663 620 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 SHOX2O60902 331 aaPredicted RBP13.27□□□□□ -0.28
HDAC4-210ENST00000493582 GOLGA6DP0CG33 693 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 USP14P54578 494 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 GRIN1Q05586 938 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 NEUROD6Q96NK8 337 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 CRACR2AQ9BSW2 395 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 ALG1Q9BT22 464 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 SEC31BQ9NQW1 1179 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 GOLGA6AQ9NYA3 693 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms