RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 MECOMQ03112 1051 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 SEC23AQ15436 765 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 SBK1Q52WX2 424 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 KRT27Q7Z3Y8 459 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 TXNRD3Q86VQ6 643 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 TMTC2Q8N394 836 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 CCDC24Q8N4L8 307 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 TDRD7Q8NHU6 1098 aaKnown RBP11.45□□□□□ -0.58
USP39-214ENST00000474572 SDR42E1Q8WUS8 393 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 INCENPQ9NQS7 918 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 POLR3EQ9NVU0 708 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.45□□□□□ -0.58
USP39-214ENST00000474572 CCDC69A6NI79 296 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 RANBP6O60518 1105 aaKnown RBP11.44□□□□□ -0.58
USP39-214ENST00000474572 FMNL1O95466 1100 aaPredicted RBP11.44□□□□□ -0.58
USP39-214ENST00000474572 HOXA10P31260 410 aaPredicted RBP11.44□□□□□ -0.58
USP39-214ENST00000474572 GUCY1B3Q02153 619 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 WTAPQ15007 396 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 SART3Q15020 963 aaKnown RBP11.44□□□□□ -0.58
USP39-214ENST00000474572 PPP2R5BQ15173 497 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 MAP3K11Q16584 847 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 MYSM1Q5VVJ2 828 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 ENGASEQ8NFI3 743 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 ESR2Q92731 530 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 TRIM44Q96DX7 344 aaPredicted RBP11.44□□□□□ -0.58
USP39-214ENST00000474572 ALG1Q9BT22 464 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 DACT1Q9NYF0 836 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 TFCP2L1Q9NZI6 479 aa11.44□□□□□ -0.58
USP39-214ENST00000474572 ROBO3Q96MS0 1386 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 A0A1W2PQ27 194 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 A0A1W2PQ64 194 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 A0A1W2PQD8 194 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 GOLGA6L4A6NEF3 574 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 ESPNB1AK53 854 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 KIF28PB7ZC32 967 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 ORC4O43929 436 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 NR1I2O75469 434 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 SERPINB2P05120 415 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 CCDC192P0DO97 292 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 PRDX5P30044 214 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 CLCN1P35523 988 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 FOSBP53539 338 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 ST5P78524 1137 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 SPTY2D1Q68D10 685 aaPredicted RBP11.43□□□□□ -0.58
USP39-214ENST00000474572 CTR9Q6PD62 1173 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 NBPF11Q86T75 865 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 MICU3Q86XE3 530 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 RAB11FIP4Q86YS3 637 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 LINC00301Q8NCQ3 95 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 RNF214Q8ND24 703 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 WDR66Q8TBY9 1149 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 BICD2Q8TD16 824 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 FTOQ9C0B1 505 aaKnown RBP eCLIP11.43□□□□□ -0.58
USP39-214ENST00000474572 ATP8A2Q9NTI2 1148 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 PODXL2Q9NZ53 605 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 SLC12A7Q9Y666 1083 aa11.43□□□□□ -0.58
USP39-214ENST00000474572 COL11A2P13942 1736 aaPredicted RBP11.43□□□□□ -0.58
USP39-214ENST00000474572 POLRMTO00411 1230 aaKnown RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 CTAGE5O15320 804 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 RXRAP19793 462 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 ATP2B4P23634 1241 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 U2AF2P26368 475 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP39-214ENST00000474572 IARSP41252 1262 aaKnown RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 DDR1Q08345 913 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 RTN1Q16799 776 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 KRT40Q6A162 431 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 OTUD7BQ6GQQ9 843 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 SYNE3Q6ZMZ3 975 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 NFXL1Q6ZNB6 911 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 ZNF654Q8IZM8 581 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 PROM2Q8N271 834 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 KCNG4Q8TDN1 519 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 CRAMP1Q96RY5 1269 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 CRNKL1Q9BZJ0 848 aaKnown RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 TNMDQ9H2S6 317 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 DCP1AQ9NPI6 582 aaPredicted RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 ARPP21Q9UBL0 812 aaPredicted RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 MKRN1Q9UHC7 482 aaKnown RBP11.42□□□□□ -0.58
USP39-214ENST00000474572 MRVI1Q9Y6F6 885 aa11.42□□□□□ -0.58
USP39-214ENST00000474572 TNKSO95271 1327 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 CCDC196A0A1B0GTZ2 297 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 ERICH2A1L162 156 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 PLSCR1O15162 318 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 PPFIA3O75145 1194 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 IL1R1P14778 569 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 PPP4CP60510 307 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 TYRO3Q06418 890 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 SSRP1Q08945 709 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 SNW1Q13573 536 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 TXNRD1Q16881 649 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 RRP12Q5JTH9 1297 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 ADALQ6DHV7 355 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 TMC4Q7Z404 712 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 ZNF804AQ7Z570 1209 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 CCAR1Q8IX12 1150 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 WASF1Q92558 559 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 RPGRQ92834 1020 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 PHKBQ93100 1093 aa11.41□□□□□ -0.58
USP39-214ENST00000474572 RBM17Q96I25 401 aaKnown RBP11.41□□□□□ -0.58
USP39-214ENST00000474572 AIFM3Q96NN9 605 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms