RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TXLNGQ9NUQ3 528 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 USP16Q9Y5T5 823 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 SCAPERQ9BY12 1400 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 APOBRQ0VD83 1088 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 GSTA5Q7RTV2 222 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 TCP11L2Q8N4U5 519 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 GAS2L2Q8NHY3 880 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 TBC1D2BQ9UPU7 963 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 KRT14P02533 472 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 PARP1P09874 1014 aaKnown RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 CETN1Q12798 172 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 PRPF40BQ6NWY9 871 aaKnown RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 ARHGAP22Q7Z5H3 698 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 HAUS8Q9BT25 410 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TSPY2A6NKD2 308 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TSPY3P0CV98 308 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TSPY8P0CW00 308 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 CYP2C19P33261 490 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TSPY1Q01534 308 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 DNM1Q05193 864 aaKnown RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 OLFML2BQ68BL8 750 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 FBXO38Q6PIJ6 1188 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 KCNG4Q8TDN1 519 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TEKT1Q969V4 418 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 MRGBPQ9NV56 204 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 VCAM1P19320 739 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 CNGA1P29973 690 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 ARL1P40616 181 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 HNRNPMP52272 730 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 RILPQ96NA2 401 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 LRRIQ3A6PVS8 624 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 SASH1O94885 1247 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 CUL4BQ13620 913 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 APLFQ8IW19 511 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 RFWD2Q8NHY2 731 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 RMND1Q9NWS8 449 aa9.99□□□□□ -0.81
COL6A3-210ENST00000473258 TMA7Q9Y2S6 64 aaKnown RBP9.99□□□□□ -0.81
COL6A3-210ENST00000473258 DENND2CQ68D51 928 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 SIX5Q8N196 739 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 FNBP4Q8N3X1 1017 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-210ENST00000473258 ANKRD42Q8N9B4 389 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 MGARPQ8TDB4 240 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 TLK1Q9UKI8 766 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 HARSP12081 509 aaKnown RBP9.98□□□□□ -0.81
COL6A3-210ENST00000473258 GJA8P48165 433 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 MYL5Q02045 173 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 TMEM132AQ24JP5 1023 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 MTMR7Q9Y216 660 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 GYS2P54840 703 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 CCDC138Q96M89 665 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 MMRN2Q9H8L6 949 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 SLC20A2Q08357 652 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 SFSWAPQ12872 951 aaKnown RBP9.98□□□□□ -0.81
COL6A3-210ENST00000473258 GLE1Q53GS7 698 aaKnown RBP9.98□□□□□ -0.81
COL6A3-210ENST00000473258 KANK4Q5T7N3 995 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-210ENST00000473258 NECTIN2Q92692 538 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 UBA5Q9GZZ9 404 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 TXNDC16Q9P2K2 825 aa9.98□□□□□ -0.81
COL6A3-210ENST00000473258 PDE5AO76074 875 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 CEP55Q53EZ4 464 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 PPP1R14BQ96C90 147 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 ESRRBO95718 433 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 APOA1P02647 267 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 C20orf194Q5TEA3 1177 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 KIFAP3Q92845 792 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 ARHGAP35Q9NRY4 1499 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 PLCB4Q15147 1175 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 SLFNL1Q499Z3 407 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 C6orf118Q5T5N4 469 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 NUTM2DQ5VT03 806 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-210ENST00000473258 NUTM2AQ8IVF1 878 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-210ENST00000473258 TEX9Q8N6V9 391 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 TRIM55Q9BYV6 548 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 CARD9Q9H257 536 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 PRDM4Q9UKN5 801 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 HDAC9Q9UKV0 1011 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 GMEB1Q9Y692 573 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 KIF27Q86VH2 1401 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 ZBBXA8MT70 800 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 DHX9Q08211 1270 aaKnown RBP9.97□□□□□ -0.81
COL6A3-210ENST00000473258 ITGB3BPQ13352 177 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-210ENST00000473258 Q4G0T1 1027 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 RRAGBQ5VZM2 374 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 CTAGE3PQ8IX95 158 aa9.97□□□□□ -0.81
COL6A3-210ENST00000473258 NR1H4Q96RI1 486 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-210ENST00000473258 CAPN9O14815 690 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 TADA3O75528 432 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SCP2P22307 547 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 KLC1Q07866 573 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 CFAP221Q4G0U5 840 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 TBC1D10BQ4KMP7 808 aaPredicted RBP9.96□□□□□ -0.81
COL6A3-210ENST00000473258 CYP26C1Q6V0L0 522 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 UBE2Q1Q7Z7E8 422 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SIKE1Q9BRV8 207 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 STRN4Q9NRL3 753 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 STMN3Q9NZ72 180 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 ZNF229Q9UJW7 825 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 SAR1BQ9Y6B6 198 aa9.96□□□□□ -0.81
COL6A3-210ENST00000473258 E2F6O75461 281 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms