RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 LRRFIP2Q9Y608 721 aaKnown RBP18.1■□□□□ 0.49
SMC1A-204ENST00000463684 EYA2O00167 538 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 PRDX5P30044 214 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 ZSCAN29Q8IWY8 852 aaPredicted RBP18.09■□□□□ 0.49
SMC1A-204ENST00000463684 ZFPM1Q8IX07 1006 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 COA7Q96BR5 231 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 TAOK2Q9UL54 1235 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 AFG3L2Q9Y4W6 797 aa18.09■□□□□ 0.49
SMC1A-204ENST00000463684 PHF20L1A8MW92 1017 aa18.08■□□□□ 0.48
SMC1A-204ENST00000463684 SOX1O00570 391 aaPredicted RBP18.07■□□□□ 0.48
SMC1A-204ENST00000463684 ENTPD3O75355 529 aa18.07■□□□□ 0.48
SMC1A-204ENST00000463684 NECAB2Q7Z6G3 386 aa18.07■□□□□ 0.48
SMC1A-204ENST00000463684 LRCH3Q96II8 777 aa18.07■□□□□ 0.48
SMC1A-204ENST00000463684 PAWRQ96IZ0 340 aaKnown RBP18.07■□□□□ 0.48
SMC1A-204ENST00000463684 PAK6Q9NQU5 681 aaPredicted RBP18.07■□□□□ 0.48
SMC1A-204ENST00000463684 CTNND1O60716 968 aaKnown RBP18.06■□□□□ 0.48
SMC1A-204ENST00000463684 RGS3P49796 1198 aa18.06■□□□□ 0.48
SMC1A-204ENST00000463684 IDI2Q9BXS1 227 aa18.06■□□□□ 0.48
SMC1A-204ENST00000463684 USP44Q9H0E7 712 aa18.06■□□□□ 0.48
SMC1A-204ENST00000463684 DENND2AQ9ULE3 1009 aa18.06■□□□□ 0.48
SMC1A-204ENST00000463684 PTPRCP08575 1304 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 SALL1Q9NSC2 1324 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 TRIM75PA6NK02 468 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 ZGPATQ8N5A5 531 aaKnown RBP18.05■□□□□ 0.48
SMC1A-204ENST00000463684 ANKRD13CQ8N6S4 541 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 CRISPLD2Q9H0B8 497 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 CEP126Q9P2H0 1117 aa18.05■□□□□ 0.48
SMC1A-204ENST00000463684 SEMA3EO15041 775 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 RFX5P48382 616 aaPredicted RBP18.04■□□□□ 0.48
SMC1A-204ENST00000463684 MAP3K10Q02779 954 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 ATP2B3Q16720 1220 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 ATG9AQ7Z3C6 839 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 SLF2Q8IX21 1173 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 MRPL50Q8N5N7 158 aaKnown RBP18.04■□□□□ 0.48
SMC1A-204ENST00000463684 PNMA3Q9UL41 463 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 AGTPBP1Q9UPW5 1226 aa18.04■□□□□ 0.48
SMC1A-204ENST00000463684 BMP8BP34820 402 aa18.03■□□□□ 0.48
SMC1A-204ENST00000463684 ANKLE1Q8NAG6 615 aa18.03■□□□□ 0.48
SMC1A-204ENST00000463684 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.03■□□□□ 0.48
SMC1A-204ENST00000463684 FBXO3Q9UK99 471 aa18.03■□□□□ 0.48
SMC1A-204ENST00000463684 ATRNL1Q5VV63 1379 aa18.03■□□□□ 0.48
SMC1A-204ENST00000463684 AK9Q5TCS8 1911 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 FAM110CQ1W6H9 321 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 GPR153Q6NV75 609 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 SH3BP5LQ7L8J4 393 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 DZIP1Q86YF9 867 aaKnown RBP18.02■□□□□ 0.48
SMC1A-204ENST00000463684 C7orf61Q8IZ16 206 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 GDF15Q99988 308 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 SIL1Q9H173 461 aa18.02■□□□□ 0.48
SMC1A-204ENST00000463684 DDTLA6NHG4 134 aaPredicted RBP18.01■□□□□ 0.47
SMC1A-204ENST00000463684 CIAO1O76071 339 aa18.01■□□□□ 0.47
SMC1A-204ENST00000463684 MNX1P50219 401 aaPredicted RBP18.01■□□□□ 0.47
SMC1A-204ENST00000463684 PICALMQ13492 652 aa18.01■□□□□ 0.47
SMC1A-204ENST00000463684 DIS3LQ8TF46 1054 aaKnown RBP18.01■□□□□ 0.47
SMC1A-204ENST00000463684 HMX1Q9NP08 348 aaPredicted RBP18.01■□□□□ 0.47
SMC1A-204ENST00000463684 GAKO14976 1311 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 HMGCRP04035 888 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 PHKA1P46020 1223 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 GCLCP48506 637 aaPredicted RBP18■□□□□ 0.47
SMC1A-204ENST00000463684 PABPC4Q13310 644 aaKnown RBP eCLIP18■□□□□ 0.47
SMC1A-204ENST00000463684 SPTY2D1Q68D10 685 aaPredicted RBP18■□□□□ 0.47
SMC1A-204ENST00000463684 DEFB123Q8N688 67 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 NBPF3Q9H094 633 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 ABCF2Q9UG63 623 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 ZMYND8Q9ULU4 1186 aaPredicted RBP18■□□□□ 0.47
SMC1A-204ENST00000463684 COL6A3P12111 3177 aa18■□□□□ 0.47
SMC1A-204ENST00000463684 RPTORQ8N122 1335 aa17.99■□□□□ 0.47
SMC1A-204ENST00000463684 MGAMO43451 1857 aa17.99■□□□□ 0.47
SMC1A-204ENST00000463684 ANP32CO43423 234 aa17.99■□□□□ 0.47
SMC1A-204ENST00000463684 TREML2Q5T2D2 321 aa17.99■□□□□ 0.47
SMC1A-204ENST00000463684 PROCA1Q8NCQ7 364 aaPredicted RBP17.99■□□□□ 0.47
SMC1A-204ENST00000463684 FAM163AQ96GL9 167 aaPredicted RBP17.99■□□□□ 0.47
SMC1A-204ENST00000463684 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.99■□□□□ 0.47
SMC1A-204ENST00000463684 DDX4Q9NQI0 724 aaKnown RBP17.99■□□□□ 0.47
SMC1A-204ENST00000463684 TBC1D12O60347 775 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 SLURP2P0DP57 97 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 IL15P40933 162 aaPredicted RBP17.98■□□□□ 0.47
SMC1A-204ENST00000463684 BTDP43251 543 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 SPP2Q13103 211 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 CCDC102BQ68D86 513 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 CCDC84Q86UT8 332 aaPredicted RBP17.98■□□□□ 0.47
SMC1A-204ENST00000463684 FAM9BQ8IZU0 186 aa17.98■□□□□ 0.47
SMC1A-204ENST00000463684 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.98■□□□□ 0.47
SMC1A-204ENST00000463684 A0A0C4DFX4 3053 aa17.97■□□□□ 0.47
SMC1A-204ENST00000463684 ZBTB22O15209 634 aa17.97■□□□□ 0.47
SMC1A-204ENST00000463684 UBTFL1P0CB47 393 aaPredicted RBP17.97■□□□□ 0.47
SMC1A-204ENST00000463684 TBC1D2Q9BYX2 928 aa17.97■□□□□ 0.47
SMC1A-204ENST00000463684 OSBPL5Q9H0X9 879 aaPredicted RBP17.97■□□□□ 0.47
SMC1A-204ENST00000463684 C11orf49Q9H6J7 331 aa17.97■□□□□ 0.47
SMC1A-204ENST00000463684 SYN1P17600 705 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 LRIT3Q3SXY7 679 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 ZNF280CQ8ND82 737 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 SSH1Q8WYL5 1049 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 GJD2Q9UKL4 321 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 HDAC5Q9UQL6 1122 aa17.96■□□□□ 0.47
SMC1A-204ENST00000463684 MROH7-TTC4A0A0A0MT08 1334 aa17.96■□□□□ 0.46
SMC1A-204ENST00000463684 LAMA3Q16787 3333 aa17.95■□□□□ 0.46
SMC1A-204ENST00000463684 RFX7Q2KHR2 1363 aa17.95■□□□□ 0.46
SMC1A-204ENST00000463684 ADORA1P30542 326 aa17.95■□□□□ 0.46
SMC1A-204ENST00000463684 RASGRF1Q13972 1273 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms