RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 PCDHAC2Q9Y5I4 1007 aa22.9■■□□□ 1.26
RPS28-202ENST00000449223 COL2A1P02458 1487 aaPredicted RBP22.9■■□□□ 1.26
RPS28-202ENST00000449223 E7EWF7 191 aa22.89■■□□□ 1.26
RPS28-202ENST00000449223 DLGAP5Q15398 846 aa22.89■■□□□ 1.26
RPS28-202ENST00000449223 STOX1Q6ZVD7 989 aa22.89■■□□□ 1.26
RPS28-202ENST00000449223 MYOZ2Q9NPC6 264 aa22.89■■□□□ 1.26
RPS28-202ENST00000449223 GJA3Q9Y6H8 435 aa22.89■■□□□ 1.26
RPS28-202ENST00000449223 USP17L12C9JPN9 530 aa22.88■■□□□ 1.25
RPS28-202ENST00000449223 USP17L21D6R901 530 aa22.88■■□□□ 1.25
RPS28-202ENST00000449223 PCP11498 1178 aaKnown RBP22.88■■□□□ 1.25
RPS28-202ENST00000449223 PPARAQ07869 468 aa22.88■■□□□ 1.25
RPS28-202ENST00000449223 FKBP1CQ5VVH2 108 aa22.88■■□□□ 1.25
RPS28-202ENST00000449223 HMGB1P09429 215 aaKnown RBP22.87■■□□□ 1.25
RPS28-202ENST00000449223 FGRP09769 529 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 HAND2P61296 217 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 C12orf60Q5U649 245 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 TBC1D10CQ8IV04 446 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 MICALL2Q8IY33 904 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 STAG1Q8WVM7 1258 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 SNX21Q969T3 373 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 JAKMIP1Q96N16 626 aaKnown RBP22.87■■□□□ 1.25
RPS28-202ENST00000449223 NEK1Q96PY6 1258 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 MCM9Q9NXL9 1143 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 CASTP20810 708 aaKnown RBP22.87■■□□□ 1.25
RPS28-202ENST00000449223 SPDYE2Q495Y8 402 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 RUFY3Q7L099 469 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 MAPKAPK5Q8IW41 473 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 DDX4Q9NQI0 724 aaKnown RBP22.87■■□□□ 1.25
RPS28-202ENST00000449223 GPRC5DQ9NZD1 345 aa22.87■■□□□ 1.25
RPS28-202ENST00000449223 CNOT7Q9UIV1 285 aaKnown RBP22.87■■□□□ 1.25
RPS28-202ENST00000449223 WNT10BO00744 389 aa22.86■■□□□ 1.25
RPS28-202ENST00000449223 NT5C2P49902 561 aa22.86■■□□□ 1.25
RPS28-202ENST00000449223 AKNAD1Q5T1N1 836 aa22.86■■□□□ 1.25
RPS28-202ENST00000449223 TTC14Q96N46 770 aa22.86■■□□□ 1.25
RPS28-202ENST00000449223 OSBPL5Q9H0X9 879 aaPredicted RBP22.86■■□□□ 1.25
RPS28-202ENST00000449223 RNF41Q9H4P4 317 aaPredicted RBP22.86■■□□□ 1.25
RPS28-202ENST00000449223 NFIAQ12857 509 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 AMOTL1Q8IY63 956 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 ALDH8A1Q9H2A2 487 aaPredicted RBP22.85■■□□□ 1.25
RPS28-202ENST00000449223 TDRD3Q9H7E2 651 aaKnown RBP22.85■■□□□ 1.25
RPS28-202ENST00000449223 CNNM2Q9H8M5 875 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 TAOK2Q9UL54 1235 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 CYP46A1Q9Y6A2 500 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 ATRNL1Q5VV63 1379 aa22.85■■□□□ 1.25
RPS28-202ENST00000449223 ST18O60284 1047 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 ENTPD3O75355 529 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 NEK4P51957 841 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 BLOC1S2Q6QNY1 142 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 L3MBTL3Q96JM7 780 aaPredicted RBP22.84■■□□□ 1.25
RPS28-202ENST00000449223 UPF3BQ9BZI7 483 aaKnown RBP22.84■■□□□ 1.25
RPS28-202ENST00000449223 FAM198AQ9UFP1 575 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 WDR19Q8NEZ3 1342 aa22.84■■□□□ 1.25
RPS28-202ENST00000449223 SHTN1A0MZ66 631 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 MINDY4BA8MYZ0 360 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 RPS6KB1P23443 525 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 CTDSPL2Q05D32 466 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 MB21D2Q8IYB1 491 aaPredicted RBP22.83■■□□□ 1.25
RPS28-202ENST00000449223 FBXL16Q8N461 479 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 NCOA7Q8NI08 942 aa22.83■■□□□ 1.25
RPS28-202ENST00000449223 DHX36Q9H2U1 1008 aaKnown RBP22.83■■□□□ 1.25
RPS28-202ENST00000449223 ZNF70Q9UC06 446 aaPredicted RBP22.83■■□□□ 1.25
RPS28-202ENST00000449223 SIPA1L1O43166 1804 aa22.83■■□□□ 1.24
RPS28-202ENST00000449223 H7C1D1 291 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 MYO1BO43795 1136 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 SLC3A2P08195 630 aaKnown RBP22.82■■□□□ 1.24
RPS28-202ENST00000449223 COL9A3Q14050 684 aaPredicted RBP22.82■■□□□ 1.24
RPS28-202ENST00000449223 MFSD6Q6ZSS7 791 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 TMOD2Q9NZR1 351 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.82■■□□□ 1.24
RPS28-202ENST00000449223 TACC3Q9Y6A5 838 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 CYP2D7A0A087X1C5 515 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 DDNO94850 711 aaPredicted RBP22.82■■□□□ 1.24
RPS28-202ENST00000449223 EXOSC10Q01780 885 aaKnown RBP22.82■■□□□ 1.24
RPS28-202ENST00000449223 TRDNQ13061 729 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 PICALMQ13492 652 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 DPY19L2Q6NUT2 758 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 DHX32Q7L7V1 743 aaKnown RBP22.82■■□□□ 1.24
RPS28-202ENST00000449223 TTC6Q86TZ1 520 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 KRT23Q9C075 422 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 NEDD4P46934 1319 aa22.82■■□□□ 1.24
RPS28-202ENST00000449223 SCN4AP35499 1836 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 ORC4O43929 436 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 EGFRP00533 1210 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 POLR3DP05423 398 aaPredicted RBP22.81■■□□□ 1.24
RPS28-202ENST00000449223 CYP2D6P10635 497 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 MCM2P49736 904 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 PLCD1P51178 756 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 NBPF9Q3BBW0 867 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 FAM83AQ86UY5 434 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 AGXT2Q9BYV1 514 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 EHD4Q9H223 541 aa22.81■■□□□ 1.24
RPS28-202ENST00000449223 GLTPD2A6NH11 291 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 SMIM22K7EJ46 135 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 CD2BP2O95400 341 aaKnown RBP22.8■■□□□ 1.24
RPS28-202ENST00000449223 CACNB3P54284 484 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 GABPAQ06546 454 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 KIF4BQ2VIQ3 1234 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 RALYLQ86SE5 291 aaKnown RBP22.8■■□□□ 1.24
RPS28-202ENST00000449223 MTA3Q9BTC8 594 aa22.8■■□□□ 1.24
RPS28-202ENST00000449223 MCM5P33992 734 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms