RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 TBC1D10BQ4KMP7 808 aaPredicted RBP24.62■■□□□ 1.53
CHD3-204ENST00000439235 SBK1Q52WX2 424 aa24.62■■□□□ 1.53
CHD3-204ENST00000439235 RBM26Q5T8P6 1007 aaKnown RBP24.62■■□□□ 1.53
CHD3-204ENST00000439235 SAMD7Q7Z3H4 446 aa24.62■■□□□ 1.53
CHD3-204ENST00000439235 ZNF70Q9UC06 446 aaPredicted RBP24.62■■□□□ 1.53
CHD3-204ENST00000439235 PALD1Q9ULE6 856 aa24.62■■□□□ 1.53
CHD3-204ENST00000439235 TSGA10IPQ3SY00 556 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 FKBP1CQ5VVH2 108 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 CTR9Q6PD62 1173 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 IL17RAQ96F46 866 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 OSBPL5Q9H0X9 879 aaPredicted RBP24.61■■□□□ 1.53
CHD3-204ENST00000439235 ADARB2Q9NS39 739 aaKnown RBP24.61■■□□□ 1.53
CHD3-204ENST00000439235 SNX14Q9Y5W7 946 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 FOCADQ5VW36 1801 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 ECM29Q5VYK3 1845 aa24.61■■□□□ 1.53
CHD3-204ENST00000439235 DDX60LQ5H9U9 1706 aaKnown RBP24.61■■□□□ 1.53
CHD3-204ENST00000439235 CLRN2A0PK11 232 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 USP17L12C9JPN9 530 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 USP17L21D6R901 530 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 ENTPD3O75355 529 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 EPS15P42566 896 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 HAND2P61296 217 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 PPARAQ07869 468 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 DDX4Q9NQI0 724 aaKnown RBP24.6■■□□□ 1.53
CHD3-204ENST00000439235 LAMA4Q16363 1823 aa24.6■■□□□ 1.53
CHD3-204ENST00000439235 COL2A1P02458 1487 aaPredicted RBP24.59■■□□□ 1.53
CHD3-204ENST00000439235 IQCA1LA6NCM1 817 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 MINDY4BA8MYZ0 360 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 POLR3DP05423 398 aaPredicted RBP24.59■■□□□ 1.53
CHD3-204ENST00000439235 CACNB3P54284 484 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 NFIAQ12857 509 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 NBPF9Q3BBW0 867 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 RASEFQ8IZ41 740 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 VEZTQ9HBM0 779 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 HACL1Q9UJ83 578 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 ANAPC4Q9UJX5 808 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 CDK5RAP2Q96SN8 1893 aa24.59■■□□□ 1.53
CHD3-204ENST00000439235 LAMB1P07942 1786 aa24.58■■□□□ 1.53
CHD3-204ENST00000439235 EGFRP00533 1210 aa24.58■■□□□ 1.53
CHD3-204ENST00000439235 SLC3A2P08195 630 aaKnown RBP24.58■■□□□ 1.53
CHD3-204ENST00000439235 TRPM4Q8TD43 1214 aa24.58■■□□□ 1.53
CHD3-204ENST00000439235 FAM198AQ9UFP1 575 aa24.58■■□□□ 1.53
CHD3-204ENST00000439235 SAP30BPQ9UHR5 308 aaKnown RBP24.58■■□□□ 1.53
CHD3-204ENST00000439235 GOLGB1Q14789 3259 aaKnown RBP24.58■■□□□ 1.52
CHD3-204ENST00000439235 HLA-DOAP06340 250 aa24.57■■□□□ 1.52
CHD3-204ENST00000439235 PSMA5P28066 241 aa24.57■■□□□ 1.52
CHD3-204ENST00000439235 TNNI2P48788 182 aa24.57■■□□□ 1.52
CHD3-204ENST00000439235 TNFAIP1Q13829 316 aa24.57■■□□□ 1.52
CHD3-204ENST00000439235 TTC6Q86TZ1 520 aa24.57■■□□□ 1.52
CHD3-204ENST00000439235 DHX36Q9H2U1 1008 aaKnown RBP24.57■■□□□ 1.52
CHD3-204ENST00000439235 RNF41Q9H4P4 317 aaPredicted RBP24.57■■□□□ 1.52
CHD3-204ENST00000439235 ROBO3Q96MS0 1386 aa24.56■■□□□ 1.52
CHD3-204ENST00000439235 WDR90Q96KV7 1748 aa24.56■■□□□ 1.52
CHD3-204ENST00000439235 C12orf60Q5U649 245 aa24.56■■□□□ 1.52
CHD3-204ENST00000439235 FAM83AQ86UY5 434 aa24.56■■□□□ 1.52
CHD3-204ENST00000439235 TCP10L2B9ZVM9 353 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 E7EWF7 191 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 CYP2D6P10635 497 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 PCP11498 1178 aaKnown RBP24.55■■□□□ 1.52
CHD3-204ENST00000439235 TCP10Q12799 353 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 RABEP1Q15276 862 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 TBC1D10CQ8IV04 446 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 STAG1Q8WVM7 1258 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 FAM151AQ8WW52 585 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 JAKMIP1Q96N16 626 aaKnown RBP24.55■■□□□ 1.52
CHD3-204ENST00000439235 KIF2CQ99661 725 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 TM6SF1Q9BZW5 370 aa24.55■■□□□ 1.52
CHD3-204ENST00000439235 CYP2D7A0A087X1C5 515 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 EPHX2P34913 555 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 CTDSPL2Q05D32 466 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 TRDNQ13061 729 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 AKNAD1Q5T1N1 836 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 USP50Q70EL3 339 aaPredicted RBP24.54■■□□□ 1.52
CHD3-204ENST00000439235 APOBEC3FQ8IUX4 373 aaKnown RBP24.54■■□□□ 1.52
CHD3-204ENST00000439235 IL27Q8NEV9 243 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 NBPF3Q9H094 633 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 CNNM2Q9H8M5 875 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 TAF6LQ9Y6J9 622 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 ATRNL1Q5VV63 1379 aa24.54■■□□□ 1.52
CHD3-204ENST00000439235 BAZ2AQ9UIF9 1905 aaKnown RBP24.53■■□□□ 1.52
CHD3-204ENST00000439235 HMGB1P09429 215 aaKnown RBP24.53■■□□□ 1.52
CHD3-204ENST00000439235 MFSD6Q6ZSS7 791 aa24.53■■□□□ 1.52
CHD3-204ENST00000439235 STOX1Q6ZVD7 989 aa24.53■■□□□ 1.52
CHD3-204ENST00000439235 RALYLQ86SE5 291 aaKnown RBP24.53■■□□□ 1.52
CHD3-204ENST00000439235 ZSCAN29Q8IWY8 852 aaPredicted RBP24.53■■□□□ 1.52
CHD3-204ENST00000439235 NEK1Q96PY6 1258 aa24.53■■□□□ 1.52
CHD3-204ENST00000439235 TAOK2Q9UL54 1235 aa24.53■■□□□ 1.52
CHD3-204ENST00000439235 SCN4AP35499 1836 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 PDE4BQ07343 736 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 SLC4A8Q2Y0W8 1093 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 ADCK5Q3MIX3 580 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 NCOA7Q8NI08 942 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 ZNF287Q9HBT7 754 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 GGA3Q9NZ52 723 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 PITPNM2Q9BZ72 1349 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 CNTNAP1P78357 1384 aa24.52■■□□□ 1.52
CHD3-204ENST00000439235 CASTP20810 708 aaKnown RBP24.51■■□□□ 1.51
CHD3-204ENST00000439235 NT5C2P49902 561 aa24.51■■□□□ 1.51
CHD3-204ENST00000439235 PLCD1P51178 756 aa24.51■■□□□ 1.51
CHD3-204ENST00000439235 HIRAP54198 1017 aaPredicted RBP24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms