RNA–Protein interactions for RNA: ENST00000430771.2

CHD4-202, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 527 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-202ENST00000430771 CACNB3P54284 484 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 MAPKAPK5Q8IW41 473 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 SDR42E1Q8WUS8 393 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 DSCC1Q9BVC3 393 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 OSBPL5Q9H0X9 879 aaPredicted RBP13.16□□□□□ -0.3
CHD4-202ENST00000430771 NAPBQ9H115 298 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 ARPP21Q9UBL0 812 aaPredicted RBP13.16□□□□□ -0.3
CHD4-202ENST00000430771 ATRNL1Q5VV63 1379 aa13.16□□□□□ -0.3
CHD4-202ENST00000430771 ASTN2O75129 1339 aaPredicted RBP13.15□□□□□ -0.3
CHD4-202ENST00000430771 APPP05067 770 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 HLA-DOAP06340 250 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 NFIAQ12857 509 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 IL25Q9H293 177 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 DCP1AQ9NPI6 582 aaPredicted RBP13.15□□□□□ -0.3
CHD4-202ENST00000430771 ANO2Q9NQ90 1003 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 PGAP2Q9UHJ9 254 aa13.15□□□□□ -0.3
CHD4-202ENST00000430771 SIPA1L1O43166 1804 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 MYH8P13535 1937 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 PATL2C9JE40 543 aaKnown RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 PRKAB2O43741 272 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 HSPD1P10809 573 aaKnown RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 TCP10Q12799 353 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 C8orf34Q49A92 452 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 KRT26Q7Z3Y9 468 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 ZSCAN29Q8IWY8 852 aaPredicted RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 ZNF784Q8NCA9 323 aaPredicted RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 FAM151AQ8WW52 585 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 HOOK2Q96ED9 719 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 DHX36Q9H2U1 1008 aaKnown RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 EPB41L4AQ9HCS5 686 aaPredicted RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 DDX4Q9NQI0 724 aaKnown RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 MCM9Q9NXL9 1143 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 FAM198AQ9UFP1 575 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 CNTNAP1P78357 1384 aa13.14□□□□□ -0.31
CHD4-202ENST00000430771 POLR2AP24928 1970 aaKnown RBP13.14□□□□□ -0.31
CHD4-202ENST00000430771 GSG1L2A8MUP6 293 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 KIF3CO14782 793 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 EPB41L2O43491 1005 aaKnown RBP13.13□□□□□ -0.31
CHD4-202ENST00000430771 RASA3Q14644 834 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 VPS53Q5VIR6 699 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 CDC37L1Q7L3B6 337 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 TTC6Q86TZ1 520 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 IFNL3Q8IZI9 196 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 DEFB129Q9H1M3 183 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 CTNNA3Q9UI47 895 aa13.13□□□□□ -0.31
CHD4-202ENST00000430771 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
CHD4-202ENST00000430771 ROBO3Q96MS0 1386 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 ADM5C9JUS6 153 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 POLR3DP05423 398 aaPredicted RBP13.12□□□□□ -0.31
CHD4-202ENST00000430771 POTEIP0CG38 1075 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 POTEJP0CG39 1038 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 NF2P35240 595 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 ALX1Q15699 326 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 SMC1BQ8NDV3 1235 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 CSRNP1Q96S65 589 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 TRIM34Q9BYJ4 488 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 TMEM39BQ9GZU3 492 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 LSG1Q9H089 658 aaKnown RBP13.12□□□□□ -0.31
CHD4-202ENST00000430771 MKRN1Q9UHC7 482 aaKnown RBP13.12□□□□□ -0.31
CHD4-202ENST00000430771 SAP30BPQ9UHR5 308 aaKnown RBP13.12□□□□□ -0.31
CHD4-202ENST00000430771 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 TRPM7Q96QT4 1865 aa13.12□□□□□ -0.31
CHD4-202ENST00000430771 FOXP2O15409 715 aa13.11□□□□□ -0.31
CHD4-202ENST00000430771 SLC3A2P08195 630 aaKnown RBP13.11□□□□□ -0.31
CHD4-202ENST00000430771 MCCP23508 829 aa13.11□□□□□ -0.31
CHD4-202ENST00000430771 IMMTQ16891 758 aaKnown RBP13.11□□□□□ -0.31
CHD4-202ENST00000430771 SBK1Q52WX2 424 aa13.11□□□□□ -0.31
CHD4-202ENST00000430771 MAP1SQ66K74 1059 aaPredicted RBP13.11□□□□□ -0.31
CHD4-202ENST00000430771 GLIS2Q9BZE0 524 aaPredicted RBP13.11□□□□□ -0.31
CHD4-202ENST00000430771 EHD4Q9H223 541 aa13.11□□□□□ -0.31
CHD4-202ENST00000430771 PAPPA2Q9BXP8 1791 aa13.11□□□□□ -0.31
CHD4-202ENST00000430771 TOMM70O94826 608 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 PPARAQ07869 468 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 SUPT20HL1Q3ZLR7 823 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 RNF20Q5VTR2 975 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 DCAF15Q66K64 600 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 CRACR2BQ8N4Y2 399 aaPredicted RBP13.1□□□□□ -0.31
CHD4-202ENST00000430771 RBM46Q8TBY0 533 aaKnown RBP13.1□□□□□ -0.31
CHD4-202ENST00000430771 CDCA5Q96FF9 252 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 UPF2Q9HAU5 1272 aaKnown RBP13.1□□□□□ -0.31
CHD4-202ENST00000430771 PI4KBQ9UBF8 816 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 HERC5Q9UII4 1024 aaKnown RBP13.1□□□□□ -0.31
CHD4-202ENST00000430771 PALD1Q9ULE6 856 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 RBM8AQ9Y5S9 174 aaKnown RBP13.1□□□□□ -0.31
CHD4-202ENST00000430771 SSC5DA1L4H1 1573 aa13.1□□□□□ -0.31
CHD4-202ENST00000430771 DDTLA6NHG4 134 aaPredicted RBP13.09□□□□□ -0.31
CHD4-202ENST00000430771 USP17L12C9JPN9 530 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 USP17L21D6R901 530 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 FGAP02671 866 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 PTH1RQ03431 593 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 SLC4A8Q2Y0W8 1093 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 C12orf60Q5U649 245 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 CTR9Q6PD62 1173 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 USP48Q86UV5 1035 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 MAP4K1Q92918 833 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 TEPSINQ96N21 525 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 ZNF287Q9HBT7 754 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 SWAP70Q9UH65 585 aa13.09□□□□□ -0.31
CHD4-202ENST00000430771 SERPINB13Q9UIV8 391 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms