RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 PPFIA3O75145 1194 aa31.08■■■□□ 2.57
LDB1-202ENST00000425280 DPP8Q6V1X1 898 aaPredicted RBP31.08■■■□□ 2.57
LDB1-202ENST00000425280 FDPSP14324 419 aaKnown RBP31.07■■■□□ 2.56
LDB1-202ENST00000425280 COA1Q9GZY4 146 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 FAM205AQ6ZU69 1335 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 MYH2Q9UKX2 1941 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 H0YIN7 160 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 H3BQV1 296 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 LDHCP07864 332 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 BAG6P46379 1132 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 SF3B2Q13435 895 aaKnown RBP31.07■■■□□ 2.56
LDB1-202ENST00000425280 IFFO2Q5TF58 517 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 STYK1Q6J9G0 422 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 NFXL1Q6ZNB6 911 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 MTA3Q9BTC8 594 aa31.07■■■□□ 2.56
LDB1-202ENST00000425280 LAMB1P07942 1786 aa31.06■■■□□ 2.56
LDB1-202ENST00000425280 MFSD14BQ5SR56 506 aa31.06■■■□□ 2.56
LDB1-202ENST00000425280 MROH7-TTC4A0A0A0MT08 1334 aa31.06■■■□□ 2.56
LDB1-202ENST00000425280 FGRP09769 529 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 METAP2P50579 478 aaKnown RBP eCLIP31.05■■■□□ 2.56
LDB1-202ENST00000425280 PPP4CP60510 307 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 DEFB132Q7Z7B7 95 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 TBC1D22AQ8WUA7 517 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 ZKSCAN3Q9BRR0 538 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 GADD45BO75293 160 aaPredicted RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 MBD3O95983 291 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 SART3Q15020 963 aaKnown RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 CAVIN1Q6NZI2 390 aaKnown RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 SH3RF3Q8TEJ3 882 aaPredicted RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 ESR2Q92731 530 aa31.05■■■□□ 2.56
LDB1-202ENST00000425280 ZC3H12CQ9C0D7 883 aaKnown RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 TMX4Q9H1E5 349 aaPredicted RBP31.05■■■□□ 2.56
LDB1-202ENST00000425280 CPLX1O14810 134 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 BAG3O95817 575 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 SBK1Q52WX2 424 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 ZBTB43O43298 467 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 FIBPO43427 364 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 PCP11498 1178 aaKnown RBP31.04■■■□□ 2.56
LDB1-202ENST00000425280 EVX2Q03828 476 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 RESTQ13127 1097 aa31.04■■■□□ 2.56
LDB1-202ENST00000425280 RTFDC1Q9BY42 306 aaPredicted RBP31.04■■■□□ 2.56
LDB1-202ENST00000425280 ARPP21Q9UBL0 812 aaPredicted RBP31.04■■■□□ 2.56
LDB1-202ENST00000425280 RXRAP19793 462 aa31.03■■■□□ 2.56
LDB1-202ENST00000425280 FOSBP53539 338 aa31.03■■■□□ 2.56
LDB1-202ENST00000425280 FAM173BQ6P4H8 233 aa31.03■■■□□ 2.56
LDB1-202ENST00000425280 MICU3Q86XE3 530 aa31.03■■■□□ 2.56
LDB1-202ENST00000425280 MKRN1Q9UHC7 482 aaKnown RBP31.03■■■□□ 2.56
LDB1-202ENST00000425280 CCDC69A6NI79 296 aa31.02■■■□□ 2.56
LDB1-202ENST00000425280 GTF2IP78347 998 aa31.02■■■□□ 2.56
LDB1-202ENST00000425280 WTAPQ15007 396 aa31.02■■■□□ 2.56
LDB1-202ENST00000425280 NOL10Q9BSC4 688 aaKnown RBP31.02■■■□□ 2.56
LDB1-202ENST00000425280 PDGFDQ9GZP0 370 aaPredicted RBP31.02■■■□□ 2.56
LDB1-202ENST00000425280 SLC12A7Q9Y666 1083 aa31.02■■■□□ 2.56
LDB1-202ENST00000425280 CYP2D6P10635 497 aa31.02■■■□□ 2.56
LDB1-202ENST00000425280 DDX52Q9Y2R4 599 aaKnown RBP eCLIP31.02■■■□□ 2.56
LDB1-202ENST00000425280 ERICH2A1L162 156 aa31.01■■■□□ 2.56
LDB1-202ENST00000425280 FSD2A1L4K1 749 aa31.01■■■□□ 2.56
LDB1-202ENST00000425280 CDC27P30260 824 aa31.01■■■□□ 2.56
LDB1-202ENST00000425280 CHRNA5P30532 468 aa31.01■■■□□ 2.56
LDB1-202ENST00000425280 ADD1P35611 737 aaKnown RBP31.01■■■□□ 2.56
LDB1-202ENST00000425280 MYL10Q9BUA6 226 aa31.01■■■□□ 2.56
LDB1-202ENST00000425280 SLX4Q8IY92 1834 aa31.01■■■□□ 2.55
LDB1-202ENST00000425280 UBAC1Q9BSL1 405 aa31.01■■■□□ 2.55
LDB1-202ENST00000425280 RBM27Q9P2N5 1060 aaKnown RBP31.01■■■□□ 2.55
LDB1-202ENST00000425280 ORC3Q9UBD5 711 aaPredicted RBP31.01■■■□□ 2.55
LDB1-202ENST00000425280 GOLGA8AA7E2F4 631 aa31■■■□□ 2.55
LDB1-202ENST00000425280 USP5P45974 858 aa31■■■□□ 2.55
LDB1-202ENST00000425280 ZSCAN16Q9H4T2 348 aaPredicted RBP31■■■□□ 2.55
LDB1-202ENST00000425280 FAM217BQ9NTX9 383 aaPredicted RBP31■■■□□ 2.55
LDB1-202ENST00000425280 MCM9Q9NXL9 1143 aa31■■■□□ 2.55
LDB1-202ENST00000425280 PRDM1O75626 825 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 KRT85P78386 507 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 CSPP1Q1MSJ5 1256 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 TMTC2Q8N394 836 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 NID2Q14112 1375 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 GPR75-ASB3A0A0A6YYF3 556 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 USP17L8P0C7I0 530 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 BTDP43251 543 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 SEC23AQ15436 765 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 DOK7Q18PE1 504 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 CCDC144CPQ8IYA2 1237 aa30.99■■■□□ 2.55
LDB1-202ENST00000425280 FAM163AQ96GL9 167 aaPredicted RBP30.99■■■□□ 2.55
LDB1-202ENST00000425280 ORC4O43929 436 aa30.98■■■□□ 2.55
LDB1-202ENST00000425280 CERS3Q8IU89 383 aa30.98■■■□□ 2.55
LDB1-202ENST00000425280 EYA3Q99504 573 aa30.98■■■□□ 2.55
LDB1-202ENST00000425280 TNKSO95271 1327 aa30.98■■■□□ 2.55
LDB1-202ENST00000425280 GOLGA6L3A6NEY3 463 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 RANBP6O60518 1105 aaKnown RBP30.97■■■□□ 2.55
LDB1-202ENST00000425280 SYNE3Q6ZMZ3 975 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 CDKL5O76039 1030 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 SLC3A2P08195 630 aaKnown RBP30.97■■■□□ 2.55
LDB1-202ENST00000425280 SLF2Q8IX21 1173 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 CNKSR1Q969H4 720 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 TMEM63CQ9P1W3 806 aa30.97■■■□□ 2.55
LDB1-202ENST00000425280 GAKO14976 1311 aa30.96■■■□□ 2.55
LDB1-202ENST00000425280 UBE2HP62256 183 aa30.96■■■□□ 2.55
LDB1-202ENST00000425280 NTRK3Q16288 839 aa30.96■■■□□ 2.55
LDB1-202ENST00000425280 ZSCAN23Q3MJ62 389 aa30.96■■■□□ 2.55
LDB1-202ENST00000425280 TGFBRAP1Q8WUH2 860 aa30.96■■■□□ 2.55
LDB1-202ENST00000425280 ZSCAN10Q96SZ4 725 aaPredicted RBP30.96■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms