RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 OTUD7BQ6GQQ9 843 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 TDRD7Q8NHU6 1098 aaKnown RBP24.17■■□□□ 1.46
USP39-203ENST00000409470 ESR2Q92731 530 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 MTA3Q9BTC8 594 aa24.17■■□□□ 1.46
USP39-203ENST00000409470 PLSCR1O15162 318 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 ZNF827Q17R98 1081 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 FBXO18Q8NFZ0 1043 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 UBAC1Q9BSL1 405 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 GGA1Q9UJY5 639 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 CCDC88AQ3V6T2 1871 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 MAST2Q6P0Q8 1798 aa24.16■■□□□ 1.46
USP39-203ENST00000409470 CYP2D7A0A087X1C5 515 aa24.15■■□□□ 1.46
USP39-203ENST00000409470 LDHBP07195 334 aaKnown RBP24.15■■□□□ 1.46
USP39-203ENST00000409470 ATL3Q6DD88 541 aa24.15■■□□□ 1.46
USP39-203ENST00000409470 C15orf52Q6ZUT6 534 aaKnown RBP24.15■■□□□ 1.46
USP39-203ENST00000409470 HOXA10P31260 410 aaPredicted RBP24.15■■□□□ 1.46
USP39-203ENST00000409470 TMTC2Q8N394 836 aa24.15■■□□□ 1.46
USP39-203ENST00000409470 BAZ2AQ9UIF9 1905 aaKnown RBP24.15■■□□□ 1.46
USP39-203ENST00000409470 MYH15Q9Y2K3 1946 aa24.15■■□□□ 1.46
USP39-203ENST00000409470 LIG1P18858 919 aa24.14■■□□□ 1.45
USP39-203ENST00000409470 CTR9Q6PD62 1173 aa24.14■■□□□ 1.45
USP39-203ENST00000409470 BICD2Q8TD16 824 aa24.14■■□□□ 1.45
USP39-203ENST00000409470 CRAMP1Q96RY5 1269 aa24.14■■□□□ 1.45
USP39-203ENST00000409470 USP17L12C9JPN9 530 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 USP17L21D6R901 530 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 SMIM22K7EJ46 135 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 IARSP41252 1262 aaKnown RBP24.13■■□□□ 1.45
USP39-203ENST00000409470 RNF214Q8ND24 703 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 PHKBQ93100 1093 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 ALG1Q9BT22 464 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 ATP8A2Q9NTI2 1148 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 CCDC173Q0VFZ6 552 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 ILDR1Q86SU0 546 aaPredicted RBP24.13■■□□□ 1.45
USP39-203ENST00000409470 NLGN1Q8N2Q7 840 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 PGBD1Q96JS3 809 aa24.13■■□□□ 1.45
USP39-203ENST00000409470 COL23A1Q86Y22 540 aaPredicted RBP24.12■■□□□ 1.45
USP39-203ENST00000409470 AKT1S1Q96B36 256 aa24.12■■□□□ 1.45
USP39-203ENST00000409470 USP28Q96RU2 1077 aa24.12■■□□□ 1.45
USP39-203ENST00000409470 FTOQ9C0B1 505 aaKnown RBP eCLIP24.12■■□□□ 1.45
USP39-203ENST00000409470 DCP1AQ9NPI6 582 aaPredicted RBP24.12■■□□□ 1.45
USP39-203ENST00000409470 GJB4Q9NTQ9 266 aa24.12■■□□□ 1.45
USP39-203ENST00000409470 FAM217BQ9NTX9 383 aaPredicted RBP24.12■■□□□ 1.45
USP39-203ENST00000409470 RCOR1Q9UKL0 485 aa24.12■■□□□ 1.45
USP39-203ENST00000409470 KLRG2A4D1S0 409 aaPredicted RBP24.11■■□□□ 1.45
USP39-203ENST00000409470 IGSF3O75054 1194 aa24.11■■□□□ 1.45
USP39-203ENST00000409470 PCP11498 1178 aaKnown RBP24.11■■□□□ 1.45
USP39-203ENST00000409470 NTRK3Q16288 839 aa24.11■■□□□ 1.45
USP39-203ENST00000409470 RANBP6O60518 1105 aaKnown RBP24.11■■□□□ 1.45
USP39-203ENST00000409470 GSTO1P78417 241 aa24.11■■□□□ 1.45
USP39-203ENST00000409470 CD209Q9NNX6 404 aa24.11■■□□□ 1.45
USP39-203ENST00000409470 TNKSO95271 1327 aa24.11■■□□□ 1.45
USP39-203ENST00000409470 SSRP1Q08945 709 aaKnown RBP24.1■■□□□ 1.45
USP39-203ENST00000409470 RTN1Q16799 776 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 RGS22Q8NE09 1264 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 AIFM3Q96NN9 605 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 NUP62CLQ9H1M0 184 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 DACT1Q9NYF0 836 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 TAOK2Q9UL54 1235 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 DUOX1Q9NRD9 1551 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 PRDM1O75626 825 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 POLR3DP05423 398 aaPredicted RBP24.1■■□□□ 1.45
USP39-203ENST00000409470 RXRBP28702 533 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 BRAPQ7Z569 592 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 SLC26A6Q9BXS9 759 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 PODXL2Q9NZ53 605 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 NID2Q14112 1375 aa24.1■■□□□ 1.45
USP39-203ENST00000409470 SLC3A2P08195 630 aaKnown RBP24.09■■□□□ 1.45
USP39-203ENST00000409470 ZNF654Q8IZM8 581 aa24.09■■□□□ 1.45
USP39-203ENST00000409470 KLHL34Q8N239 644 aa24.09■■□□□ 1.45
USP39-203ENST00000409470 ZSCAN10Q96SZ4 725 aaPredicted RBP24.09■■□□□ 1.45
USP39-203ENST00000409470 ARPP21Q9UBL0 812 aaPredicted RBP24.09■■□□□ 1.45
USP39-203ENST00000409470 C6orf229H3BNL8 230 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 PPEF1O14829 653 aaPredicted RBP24.08■■□□□ 1.45
USP39-203ENST00000409470 TMC4Q7Z404 712 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 IQCA1Q86XH1 822 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 FLAD1Q8NFF5 587 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 TBC1D16Q8TBP0 767 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 NUP133Q8WUM0 1156 aa24.08■■□□□ 1.45
USP39-203ENST00000409470 TRIM44Q96DX7 344 aaPredicted RBP24.08■■□□□ 1.45
USP39-203ENST00000409470 NOL10Q9BSC4 688 aaKnown RBP24.08■■□□□ 1.45
USP39-203ENST00000409470 DDX19AQ9NUU7 478 aaKnown RBP24.08■■□□□ 1.45
USP39-203ENST00000409470 STK36Q9NRP7 1315 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 CCDC196A0A1B0GTZ2 297 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 FGRP09769 529 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 KIF23Q02241 960 aaPredicted RBP24.08■■□□□ 1.44
USP39-203ENST00000409470 TRIM29Q14134 588 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 SEC23AQ15436 765 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 PPP1R9BQ96SB3 815 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 POLLQ9UGP5 575 aa24.08■■□□□ 1.44
USP39-203ENST00000409470 FMNL1O95466 1100 aaPredicted RBP24.07■■□□□ 1.44
USP39-203ENST00000409470 BAG3O95817 575 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 IL1R1P14778 569 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 IFNAR1P17181 557 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 USP5P45974 858 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 RCAN1P53805 252 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 DIXDC1Q155Q3 683 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 GRIK5Q16478 980 aa24.07■■□□□ 1.44
USP39-203ENST00000409470 LDHCP07864 332 aa24.06■■□□□ 1.44
USP39-203ENST00000409470 CAMK4Q16566 473 aa24.06■■□□□ 1.44
USP39-203ENST00000409470 MAP3K11Q16584 847 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms