RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 TMEM39BQ9GZU3 492 aa35.27■■■■□ 3.24
USP42-202ENST00000404008 FLT1P17948 1338 aa35.27■■■■□ 3.24
USP42-202ENST00000404008 MCMDC2Q4G0Z9 681 aa35.26■■■■□ 3.24
USP42-202ENST00000404008 ZFPM1Q8IX07 1006 aa35.26■■■■□ 3.24
USP42-202ENST00000404008 RPAP1Q9BWH6 1393 aaPredicted RBP35.26■■■■□ 3.24
USP42-202ENST00000404008 CHMLP26374 656 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 CWC27Q6UX04 472 aaKnown RBP35.25■■■■□ 3.23
USP42-202ENST00000404008 MAPKAPK5Q8IW41 473 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 CDCA5Q96FF9 252 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 TEPSINQ96N21 525 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 PASKQ96RG2 1323 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 COL2A1P02458 1487 aaPredicted RBP35.25■■■■□ 3.23
USP42-202ENST00000404008 USP5P45974 858 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 PRAMEF18Q5VWM3 479 aa35.25■■■■□ 3.23
USP42-202ENST00000404008 OSBPL5Q9H0X9 879 aaPredicted RBP35.25■■■■□ 3.23
USP42-202ENST00000404008 PRKAB2O43741 272 aa35.24■■■■□ 3.23
USP42-202ENST00000404008 FMR1Q06787 632 aaKnown RBP eCLIP35.24■■■■□ 3.23
USP42-202ENST00000404008 CCDC129Q6ZRS4 1044 aa35.24■■■■□ 3.23
USP42-202ENST00000404008 SDR42E1Q8WUS8 393 aa35.24■■■■□ 3.23
USP42-202ENST00000404008 BAZ2AQ9UIF9 1905 aaKnown RBP35.23■■■■□ 3.23
USP42-202ENST00000404008 CDAN1Q8IWY9 1227 aa35.23■■■■□ 3.23
USP42-202ENST00000404008 SLC4A4Q9Y6R1 1079 aa35.23■■■■□ 3.23
USP42-202ENST00000404008 ATRNL1Q5VV63 1379 aa35.22■■■■□ 3.23
USP42-202ENST00000404008 MKRN1Q9UHC7 482 aaKnown RBP35.22■■■■□ 3.23
USP42-202ENST00000404008 GNAT2P19087 354 aa35.21■■■■□ 3.23
USP42-202ENST00000404008 SH3BP5LQ7L8J4 393 aa35.21■■■■□ 3.23
USP42-202ENST00000404008 ZNF589Q86UQ0 364 aaPredicted RBP35.21■■■■□ 3.23
USP42-202ENST00000404008 ATP8A2Q9NTI2 1148 aa35.21■■■■□ 3.23
USP42-202ENST00000404008 SSC5DA1L4H1 1573 aa35.21■■■■□ 3.23
USP42-202ENST00000404008 NBPF12Q5TAG4 269 aaPredicted RBP35.2■■■■□ 3.23
USP42-202ENST00000404008 DCP1AQ9NPI6 582 aaPredicted RBP35.2■■■■□ 3.23
USP42-202ENST00000404008 SIPA1L1O43166 1804 aa35.2■■■■□ 3.22
USP42-202ENST00000404008 CCDC171Q6TFL3 1326 aa35.19■■■■□ 3.22
USP42-202ENST00000404008 DDTLA6NHG4 134 aaPredicted RBP35.18■■■■□ 3.22
USP42-202ENST00000404008 GSG1L2A8MUP6 293 aa35.18■■■■□ 3.22
USP42-202ENST00000404008 RAD50Q92878 1312 aa35.17■■■■□ 3.22
USP42-202ENST00000404008 SUPT20HL1Q3ZLR7 823 aa35.17■■■■□ 3.22
USP42-202ENST00000404008 ZSCAN29Q8IWY8 852 aaPredicted RBP35.17■■■■□ 3.22
USP42-202ENST00000404008 RUFY2Q8WXA3 655 aa35.17■■■■□ 3.22
USP42-202ENST00000404008 IL25Q9H293 177 aa35.17■■■■□ 3.22
USP42-202ENST00000404008 SAP30BPQ9UHR5 308 aaKnown RBP35.17■■■■□ 3.22
USP42-202ENST00000404008 CDC45O75419 566 aa35.16■■■■□ 3.22
USP42-202ENST00000404008 MFAP1P55081 439 aaKnown RBP35.16■■■■□ 3.22
USP42-202ENST00000404008 CSRNP1Q96S65 589 aa35.16■■■■□ 3.22
USP42-202ENST00000404008 DHX36Q9H2U1 1008 aaKnown RBP35.16■■■■□ 3.22
USP42-202ENST00000404008 PATL2C9JE40 543 aaKnown RBP35.15■■■■□ 3.22
USP42-202ENST00000404008 FOXP2O15409 715 aa35.15■■■■□ 3.22
USP42-202ENST00000404008 GIMAP6Q6P9H5 292 aa35.15■■■■□ 3.22
USP42-202ENST00000404008 ZNF408Q9H9D4 720 aa35.15■■■■□ 3.22
USP42-202ENST00000404008 PALD1Q9ULE6 856 aa35.15■■■■□ 3.22
USP42-202ENST00000404008 LAMB1P07942 1786 aa35.15■■■■□ 3.22
USP42-202ENST00000404008 CELF2O95319 508 aaKnown RBP35.14■■■■□ 3.22
USP42-202ENST00000404008 VPS53Q5VIR6 699 aa35.14■■■■□ 3.22
USP42-202ENST00000404008 EPB41L4AQ9HCS5 686 aaPredicted RBP35.14■■■■□ 3.22
USP42-202ENST00000404008 PAPPA2Q9BXP8 1791 aa35.14■■■■□ 3.22
USP42-202ENST00000404008 NF2P35240 595 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 CST9Q5W186 159 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 DDRGK1Q96HY6 314 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 MCM9Q9NXL9 1143 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 SGSM2O43147 1006 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 APPP05067 770 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 HOOK2Q96ED9 719 aa35.13■■■■□ 3.21
USP42-202ENST00000404008 IFNL3Q8IZI9 196 aa35.12■■■■□ 3.21
USP42-202ENST00000404008 HSPD1P10809 573 aaKnown RBP35.11■■■■□ 3.21
USP42-202ENST00000404008 CASC1Q6TDU7 716 aa35.11■■■■□ 3.21
USP42-202ENST00000404008 NACAP1Q9BZK3 213 aa35.11■■■■□ 3.21
USP42-202ENST00000404008 PI4KBQ9UBF8 816 aa35.11■■■■□ 3.21
USP42-202ENST00000404008 SLC4A8Q2Y0W8 1093 aa35.1■■■■□ 3.21
USP42-202ENST00000404008 ESYT1Q9BSJ8 1104 aa35.1■■■■□ 3.21
USP42-202ENST00000404008 POLR3DP05423 398 aaPredicted RBP35.09■■■■□ 3.21
USP42-202ENST00000404008 OTOFQ9HC10 1997 aa35.09■■■■□ 3.21
USP42-202ENST00000404008 USP17L12C9JPN9 530 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 USP17L21D6R901 530 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 HLA-DOAP06340 250 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 TDO2P48775 406 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 C1QTNF8P60827 252 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 CTR9Q6PD62 1173 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 TTC6Q86TZ1 520 aa35.08■■■■□ 3.21
USP42-202ENST00000404008 ARPP21Q9UBL0 812 aaPredicted RBP35.08■■■■□ 3.21
USP42-202ENST00000404008 PLCD1P51178 756 aa35.07■■■■□ 3.2
USP42-202ENST00000404008 DCAF15Q66K64 600 aa35.07■■■■□ 3.2
USP42-202ENST00000404008 MIGA2Q7L4E1 593 aa35.07■■■■□ 3.2
USP42-202ENST00000404008 GBA2Q9HCG7 927 aaPredicted RBP35.07■■■■□ 3.2
USP42-202ENST00000404008 FZD1Q9UP38 647 aa35.07■■■■□ 3.2
USP42-202ENST00000404008 PPP1R12BO60237 982 aaPredicted RBP35.06■■■■□ 3.2
USP42-202ENST00000404008 CYP2D6P10635 497 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 APLP1P51693 650 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 FKBP1BP68106 108 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 MAP3K10Q02779 954 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 PRKG1Q13976 671 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 ALX1Q15699 326 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 SBK1Q52WX2 424 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 METTL16Q86W50 562 aaKnown RBP35.06■■■■□ 3.2
USP42-202ENST00000404008 NAPBQ9H115 298 aa35.06■■■■□ 3.2
USP42-202ENST00000404008 TMEM88BA6NKF7 163 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 TBC1D12O60347 775 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 EVX2Q03828 476 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 C12orf60Q5U649 245 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 AMOTL1Q8IY63 956 aa35.05■■■■□ 3.2
USP42-202ENST00000404008 EHD4Q9H223 541 aa35.05■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms