RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ATP8A2Q9NTI2 1148 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 DAGLAQ9Y4D2 1042 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 ZNF541Q9H0D2 1346 aa16.91■□□□□ 0.3
SKA1-202ENST00000398452 MYO1BO43795 1136 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 PSMA5P28066 241 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 DLGAP5Q15398 846 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 EAPPQ56P03 285 aaPredicted RBP16.9■□□□□ 0.3
SKA1-202ENST00000398452 CREB3L3Q68CJ9 461 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 GIMAP6Q6P9H5 292 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 IFNL3Q8IZI9 196 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 ZNF384Q8TF68 577 aa16.9■□□□□ 0.3
SKA1-202ENST00000398452 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
SKA1-202ENST00000398452 MYO5AQ9Y4I1 1855 aaKnown RBP16.9■□□□□ 0.3
SKA1-202ENST00000398452 H7C1D1 291 aa16.89■□□□□ 0.29
SKA1-202ENST00000398452 SLC3A2P08195 630 aaKnown RBP16.89■□□□□ 0.29
SKA1-202ENST00000398452 ALX1Q15699 326 aa16.89■□□□□ 0.29
SKA1-202ENST00000398452 CFAP100Q494V2 611 aa16.89■□□□□ 0.29
SKA1-202ENST00000398452 ZDHHC15Q96MV8 337 aa16.89■□□□□ 0.29
SKA1-202ENST00000398452 USP40Q9NVE5 1235 aa16.89■□□□□ 0.29
SKA1-202ENST00000398452 SLC27A2O14975 620 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 GALR2O43603 387 aaPredicted RBP16.88■□□□□ 0.29
SKA1-202ENST00000398452 PRKAB2O43741 272 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 FGAP02671 866 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 LMOD1P29536 600 aaPredicted RBP16.88■□□□□ 0.29
SKA1-202ENST00000398452 TRDNQ13061 729 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 NECTIN1Q15223 517 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 GPC2Q8N158 579 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 IL27Q8NEV9 243 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 SH3RF3Q8TEJ3 882 aaPredicted RBP16.88■□□□□ 0.29
SKA1-202ENST00000398452 SDR42E1Q8WUS8 393 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 DPF2Q92785 391 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 ARPP21Q9UBL0 812 aaPredicted RBP16.88■□□□□ 0.29
SKA1-202ENST00000398452 ZMYM6O95789 1325 aa16.88■□□□□ 0.29
SKA1-202ENST00000398452 GSG1L2A8MUP6 293 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 GMPSP49915 693 aaPredicted RBP16.87■□□□□ 0.29
SKA1-202ENST00000398452 RABEP1Q15276 862 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 IFFO2Q5TF58 517 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 TGFBRAP1Q8WUH2 860 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 MCM9Q9NXL9 1143 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 SCN9AQ15858 1988 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 COL4A5P29400 1685 aa16.87■□□□□ 0.29
SKA1-202ENST00000398452 MYH2Q9UKX2 1941 aa16.86■□□□□ 0.29
SKA1-202ENST00000398452 IQCA1LA6NCM1 817 aa16.86■□□□□ 0.29
SKA1-202ENST00000398452 MINDY4BA8MYZ0 360 aa16.86■□□□□ 0.29
SKA1-202ENST00000398452 POLR3DP05423 398 aaPredicted RBP16.86■□□□□ 0.29
SKA1-202ENST00000398452 RALYLQ86SE5 291 aaKnown RBP16.86■□□□□ 0.29
SKA1-202ENST00000398452 GMLQ99445 158 aa16.86■□□□□ 0.29
SKA1-202ENST00000398452 RNF41Q9H4P4 317 aaPredicted RBP16.86■□□□□ 0.29
SKA1-202ENST00000398452 TAF1DQ9H5J8 278 aaPredicted RBP16.86■□□□□ 0.29
SKA1-202ENST00000398452 DAXXQ9UER7 740 aaPredicted RBP16.86■□□□□ 0.29
SKA1-202ENST00000398452 ST18O60284 1047 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 PICALMQ13492 652 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 MAPKAPK5Q8IW41 473 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 MICALL2Q8IY33 904 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 JAKMIP1Q96N16 626 aaKnown RBP16.85■□□□□ 0.29
SKA1-202ENST00000398452 PHF12Q96QT6 1004 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 MYOZ2Q9NPC6 264 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 DCP1AQ9NPI6 582 aaPredicted RBP16.85■□□□□ 0.29
SKA1-202ENST00000398452 CNOT7Q9UIV1 285 aaKnown RBP16.85■□□□□ 0.29
SKA1-202ENST00000398452 SNX14Q9Y5W7 946 aa16.85■□□□□ 0.29
SKA1-202ENST00000398452 PSME4Q14997 1843 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 CYP21A2P08686 494 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 HMGB1P09429 215 aaKnown RBP16.84■□□□□ 0.29
SKA1-202ENST00000398452 HAND2P61296 217 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 BECN1Q14457 450 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 APOBEC3HQ6NTF7 200 aaKnown RBP16.84■□□□□ 0.29
SKA1-202ENST00000398452 CDC42EP5Q6NZY7 148 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 ZNF287Q9HBT7 754 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 TOMM22Q9NS69 142 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 HACL1Q9UJ83 578 aa16.84■□□□□ 0.29
SKA1-202ENST00000398452 HLA-DOAP06340 250 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 EPHX2P34913 555 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 RHBDL3P58872 404 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 PPARAQ07869 468 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 TSGA10IPQ3SY00 556 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 RBM26Q5T8P6 1007 aaKnown RBP16.83■□□□□ 0.28
SKA1-202ENST00000398452 BLOC1S2Q6QNY1 142 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 TTC6Q86TZ1 520 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 MTMR14Q8NCE2 650 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 KCNB2Q92953 911 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 NEK1Q96PY6 1258 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 TRIM34Q9BYJ4 488 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 CNNM2Q9H8M5 875 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 EPB41L4AQ9HCS5 686 aaPredicted RBP16.83■□□□□ 0.28
SKA1-202ENST00000398452 MKRN1Q9UHC7 482 aaKnown RBP16.83■□□□□ 0.28
SKA1-202ENST00000398452 PALD1Q9ULE6 856 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 CYP46A1Q9Y6A2 500 aa16.83■□□□□ 0.28
SKA1-202ENST00000398452 FLT1P17948 1338 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 USP17L12C9JPN9 530 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 USP17L21D6R901 530 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 PCP11498 1178 aaKnown RBP16.82■□□□□ 0.28
SKA1-202ENST00000398452 CASTP20810 708 aaKnown RBP16.82■□□□□ 0.28
SKA1-202ENST00000398452 TNNI2P48788 182 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 FGD1P98174 961 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 PDE4BQ07343 736 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 MFSD6Q6ZSS7 791 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 LDHDQ86WU2 507 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 ZSCAN29Q8IWY8 852 aaPredicted RBP16.82■□□□□ 0.28
SKA1-202ENST00000398452 NCOA7Q8NI08 942 aa16.82■□□□□ 0.28
SKA1-202ENST00000398452 L3MBTL3Q96JM7 780 aaPredicted RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms