RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RHBDL3P58872 404 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 FAM151AQ8WW52 585 aa12.15□□□□□ -0.46
VPS53-202ENST00000389040 RPAP1Q9BWH6 1393 aaPredicted RBP12.14□□□□□ -0.47
VPS53-202ENST00000389040 PASKQ96RG2 1323 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 NF2P35240 595 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 FKBP1BP68106 108 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 RAB3GAP1Q15042 981 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 RIOK1Q9BRS2 568 aaKnown RBP12.14□□□□□ -0.47
VPS53-202ENST00000389040 DHX36Q9H2U1 1008 aaKnown RBP12.14□□□□□ -0.47
VPS53-202ENST00000389040 VEZTQ9HBM0 779 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 HELLSQ9NRZ9 838 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 AATFQ9NY61 560 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS53-202ENST00000389040 MYH13Q9UKX3 1938 aa12.14□□□□□ -0.47
VPS53-202ENST00000389040 CLRN2A0PK11 232 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 SGSM2O43147 1006 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 WDHD1O75717 1129 aaPredicted RBP12.13□□□□□ -0.47
VPS53-202ENST00000389040 RASA3Q14644 834 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 ZMYM1Q5SVZ6 1142 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 GIMAP6Q6P9H5 292 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 USP48Q86UV5 1035 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 AIDAQ96BJ3 306 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 IL17RAQ96F46 866 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 CRNKL1Q9BZJ0 848 aaKnown RBP12.13□□□□□ -0.47
VPS53-202ENST00000389040 IL25Q9H293 177 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 PALD1Q9ULE6 856 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 PCDHAC2Q9Y5I4 1007 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 ADGRA1Q86SQ6 560 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 TEX11Q8IYF3 940 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 TNPO1Q92973 898 aaKnown RBP12.13□□□□□ -0.47
VPS53-202ENST00000389040 ATP8A2Q9NTI2 1148 aa12.13□□□□□ -0.47
VPS53-202ENST00000389040 COL2A1P02458 1487 aaPredicted RBP12.13□□□□□ -0.47
VPS53-202ENST00000389040 RAD50Q92878 1312 aa12.12□□□□□ -0.47
VPS53-202ENST00000389040 GLIS2Q9BZE0 524 aaPredicted RBP12.12□□□□□ -0.47
VPS53-202ENST00000389040 ASTN2O75129 1339 aaPredicted RBP12.12□□□□□ -0.47
VPS53-202ENST00000389040 DDX11L8A8MPP1 907 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 TCP10L2B9ZVM9 353 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 HSPA4P34932 840 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 NEK4P51957 841 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 C1QTNF8P60827 252 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 MCMDC2Q4G0Z9 681 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 MIGA1Q8NAN2 632 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 SH3RF3Q8TEJ3 882 aaPredicted RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 RUFY2Q8WXA3 655 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 DIAPH3Q9NSV4 1193 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 FAM198AQ9UFP1 575 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 ATRNL1Q5VV63 1379 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 PPP1R12BO60237 982 aaPredicted RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 MCM2P49736 904 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 APLP1P51693 650 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 MAP3K10Q02779 954 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 CWC27Q6UX04 472 aaKnown RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 OSBP2Q969R2 916 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 CDCA5Q96FF9 252 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 HHIPL1Q96JK4 782 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 GBP4Q96PP9 640 aa12.11□□□□□ -0.47
VPS53-202ENST00000389040 STRBPQ96SI9 672 aaKnown RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 PUS7LQ9H0K6 701 aaKnown RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
VPS53-202ENST00000389040 MAST2Q6P0Q8 1798 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 TBC1D12O60347 775 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 USP5P45974 858 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 NFIAQ12857 509 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 DCAF15Q66K64 600 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 KIAA1211Q6ZU35 1233 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 C2orf69Q8N8R5 385 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 TEPSINQ96N21 525 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 LSG1Q9H089 658 aaKnown RBP12.1□□□□□ -0.47
VPS53-202ENST00000389040 PI4KBQ9UBF8 816 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 DOCK2Q92608 1830 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 CNTNAP1P78357 1384 aa12.1□□□□□ -0.47
VPS53-202ENST00000389040 TMEM88BA6NKF7 163 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 PATL2C9JE40 543 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 ADM5C9JUS6 153 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 MBD4O95243 580 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 MAP3K11Q16584 847 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 TTC6Q86TZ1 520 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 METTL16Q86W50 562 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 FOXP4Q8IVH2 680 aaPredicted RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 AMOTL1Q8IY63 956 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 IL27Q8NEV9 243 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 TGFBRAP1Q8WUH2 860 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 NACAP1Q9BZK3 213 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 CREBZFQ9NS37 354 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 MKRN1Q9UHC7 482 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 HERC5Q9UII4 1024 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 FLT1P17948 1338 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 GPAA1O43292 621 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 CELF2O95319 508 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 DYNLL1P63167 89 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 TMEM39BQ9GZU3 492 aa12.09□□□□□ -0.47
VPS53-202ENST00000389040 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
VPS53-202ENST00000389040 HLA-DOAP06340 250 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 CACNB3P54284 484 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 CST9Q5W186 159 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 ARMC9Q7Z3E5 817 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 LCORLQ8N3X6 602 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 EHD4Q9H223 541 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 ARMT1Q9H993 441 aa12.08□□□□□ -0.48
VPS53-202ENST00000389040 DCP1AQ9NPI6 582 aaPredicted RBP12.08□□□□□ -0.48
VPS53-202ENST00000389040 DDX4Q9NQI0 724 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms