RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 APOBEC3HQ6NTF7 200 aaKnown RBP22.03■■□□□ 1.12
CLN3-206ENST00000360019 CHST3Q7LGC8 479 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 RALYLQ86SE5 291 aaKnown RBP22.03■■□□□ 1.12
CLN3-206ENST00000360019 LIMCH1Q9UPQ0 1083 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 MYO3BQ8WXR4 1341 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 SBK1Q52WX2 424 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 Q6ZUG5 572 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 JDP2Q8WYK2 163 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 ZDHHC15Q96MV8 337 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 GMLQ99445 158 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 SLKQ9H2G2 1235 aaPredicted RBP22.03■■□□□ 1.12
CLN3-206ENST00000360019 MCM9Q9NXL9 1143 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 ARPP21Q9UBL0 812 aaPredicted RBP22.03■■□□□ 1.12
CLN3-206ENST00000360019 PCDHAC2Q9Y5I4 1007 aa22.03■■□□□ 1.12
CLN3-206ENST00000360019 LARGE1O95461 756 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 CXCL9Q07325 125 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 TRDNQ13061 729 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 MAPKAPK5Q8IW41 473 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 SERPINA10Q9UK55 444 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 NAV1Q8NEY1 1877 aa22.02■■□□□ 1.12
CLN3-206ENST00000360019 LAMB1P07942 1786 aa22.02■■□□□ 1.11
CLN3-206ENST00000360019 USP17L8P0C7I0 530 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 CYP2D6P10635 497 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 ANTXR2P58335 489 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 ANKRD1Q15327 319 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 MFSD6Q6ZSS7 791 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 STK11IPQ8N1F8 1099 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 FOXD4L1Q9NU39 408 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 TPCN1Q9ULQ1 816 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 ZBTB12Q9Y330 459 aaPredicted RBP22.01■■□□□ 1.11
CLN3-206ENST00000360019 FLT1P17948 1338 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 DDX60LQ5H9U9 1706 aaKnown RBP22.01■■□□□ 1.11
CLN3-206ENST00000360019 B4E1Z4 1266 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 MCM5P33992 734 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 CUL4AQ13619 759 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 CDC42EP5Q6NZY7 148 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 AGXT2Q9BYV1 514 aa22.01■■□□□ 1.11
CLN3-206ENST00000360019 PRC1O43663 620 aa22■■□□□ 1.11
CLN3-206ENST00000360019 HSP90AA1P07900 732 aaKnown RBP22■■□□□ 1.11
CLN3-206ENST00000360019 CYB5R4Q7L1T6 521 aa22■■□□□ 1.11
CLN3-206ENST00000360019 RNF41Q9H4P4 317 aaPredicted RBP22■■□□□ 1.11
CLN3-206ENST00000360019 FOCADQ5VW36 1801 aa22■■□□□ 1.11
CLN3-206ENST00000360019 WDHD1O75717 1129 aaPredicted RBP21.99■■□□□ 1.11
CLN3-206ENST00000360019 ME3Q16798 604 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 SLC4A8Q2Y0W8 1093 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 BRF1Q92994 677 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 CNNM2Q9H8M5 875 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 USP40Q9NVE5 1235 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 RBM5P52756 815 aaKnown RBP eCLIP21.99■■□□□ 1.11
CLN3-206ENST00000360019 C12orf60Q5U649 245 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 CIAPIN1Q6FI81 312 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 FBXL16Q8N461 479 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 KRT23Q9C075 422 aa21.99■■□□□ 1.11
CLN3-206ENST00000360019 WDR19Q8NEZ3 1342 aa21.98■■□□□ 1.11
CLN3-206ENST00000360019 FGRP09769 529 aa21.98■■□□□ 1.11
CLN3-206ENST00000360019 DDX4Q9NQI0 724 aaKnown RBP21.98■■□□□ 1.11
CLN3-206ENST00000360019 GPHNQ9NQX3 736 aaPredicted RBP21.98■■□□□ 1.11
CLN3-206ENST00000360019 SAP30BPQ9UHR5 308 aaKnown RBP21.98■■□□□ 1.11
CLN3-206ENST00000360019 KDM4AO75164 1064 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 DDIT3P35638 169 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 FGD1P98174 961 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 CFAP100Q494V2 611 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 ARHGAP27Q6ZUM4 889 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 AGBL3Q8NEM8 1001 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 ZSCAN31Q96LW9 406 aaPredicted RBP21.97■■□□□ 1.11
CLN3-206ENST00000360019 ZSWIM5Q9P217 1185 aa21.97■■□□□ 1.11
CLN3-206ENST00000360019 ST3GAL1Q11201 340 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 RRP12Q5JTH9 1297 aaKnown RBP21.96■■□□□ 1.11
CLN3-206ENST00000360019 SH2B1Q9NRF2 756 aaPredicted RBP21.96■■□□□ 1.11
CLN3-206ENST00000360019 TOMM22Q9NS69 142 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.96■■□□□ 1.11
CLN3-206ENST00000360019 ROBO3Q96MS0 1386 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 FZD9O00144 591 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 PCP11498 1178 aaKnown RBP21.96■■□□□ 1.11
CLN3-206ENST00000360019 PLCD1P51178 756 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 NFIAQ12857 509 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 PICALMQ13492 652 aa21.96■■□□□ 1.11
CLN3-206ENST00000360019 ECM29Q5VYK3 1845 aa21.95■■□□□ 1.11
CLN3-206ENST00000360019 PRDM1O75626 825 aa21.95■■□□□ 1.1
CLN3-206ENST00000360019 INTS4Q96HW7 963 aaKnown RBP21.95■■□□□ 1.1
CLN3-206ENST00000360019 POLR3DP05423 398 aaPredicted RBP21.94■■□□□ 1.1
CLN3-206ENST00000360019 YBX3P16989 372 aaKnown RBP eCLIP21.94■■□□□ 1.1
CLN3-206ENST00000360019 APOBRQ0VD83 1088 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 TNIP1Q15025 636 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 AMOTL1Q8IY63 956 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 PRMT6Q96LA8 375 aaPredicted RBP21.94■■□□□ 1.1
CLN3-206ENST00000360019 MYH1P12882 1939 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 ORC4O43929 436 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 SLC3A2P08195 630 aaKnown RBP21.94■■□□□ 1.1
CLN3-206ENST00000360019 OGFOD1Q8N543 542 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 NECAB1Q8N987 351 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 DYNLL2Q96FJ2 89 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 HDAC9Q9UKV0 1011 aa21.94■■□□□ 1.1
CLN3-206ENST00000360019 SH2B2O14492 632 aaPredicted RBP21.93■■□□□ 1.1
CLN3-206ENST00000360019 CACNB3P54284 484 aa21.93■■□□□ 1.1
CLN3-206ENST00000360019 CCDC83Q8IWF9 413 aa21.93■■□□□ 1.1
CLN3-206ENST00000360019 IGDCC4Q8TDY8 1250 aa21.93■■□□□ 1.1
CLN3-206ENST00000360019 ESR2Q92731 530 aa21.93■■□□□ 1.1
CLN3-206ENST00000360019 SPDYE2BA6NHP3 402 aa21.92■■□□□ 1.1
CLN3-206ENST00000360019 SPDYE6P0CI01 402 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms