RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 USP5P45974 858 aa21.51■■□□□ 1.03
SMARCD3-202ENST00000356800 NOL8Q76FK4 1167 aaKnown RBP21.51■■□□□ 1.03
SMARCD3-202ENST00000356800 SERPINA10Q9UK55 444 aa21.51■■□□□ 1.03
SMARCD3-202ENST00000356800 NEDD4P46934 1319 aa21.51■■□□□ 1.03
SMARCD3-202ENST00000356800 HMGB1P09429 215 aaKnown RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 CYP2D6P10635 497 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 YBX3P16989 372 aaKnown RBP eCLIP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 EXOSC10Q01780 885 aaKnown RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 DHX32Q7L7V1 743 aaKnown RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 MB21D2Q8IYB1 491 aaPredicted RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 ALDH8A1Q9H2A2 487 aaPredicted RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 USP17L8P0C7I0 530 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 SBK1Q52WX2 424 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 AKNAD1Q5T1N1 836 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 CIAPIN1Q6FI81 312 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 CDC42EP5Q6NZY7 148 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 MAPKAPK5Q8IW41 473 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 STAG1Q8WVM7 1258 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 LARP6Q9BRS8 491 aaKnown RBP21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 MCM9Q9NXL9 1143 aa21.5■■□□□ 1.03
SMARCD3-202ENST00000356800 FZD9O00144 591 aa21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 TOB2Q14106 344 aaPredicted RBP21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 AGBL3Q8NEM8 1001 aa21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 NCOA7Q8NI08 942 aa21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 TMX3Q96JJ7 454 aa21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 USP40Q9NVE5 1235 aa21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 ARPP21Q9UBL0 812 aaPredicted RBP21.49■■□□□ 1.03
SMARCD3-202ENST00000356800 FLT1P17948 1338 aa21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 WDHD1O75717 1129 aaPredicted RBP21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 ANTXR2P58335 489 aa21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 CHST3Q7LGC8 479 aa21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 SPRYD3Q8NCJ5 442 aa21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 LRRC2Q9BYS8 371 aa21.48■■□□□ 1.03
SMARCD3-202ENST00000356800 CFAP100Q494V2 611 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 STK11IPQ8N1F8 1099 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 B4E1Z4 1266 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 RBM5P52756 815 aaKnown RBP eCLIP21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 TNIP1Q15025 636 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 C12orf60Q5U649 245 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 MFSD6Q6ZSS7 791 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 Q6ZUG5 572 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 RALYLQ86SE5 291 aaKnown RBP21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 DDX4Q9NQI0 724 aaKnown RBP21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 SAP30BPQ9UHR5 308 aaKnown RBP21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 LIMCH1Q9UPQ0 1083 aa21.47■■□□□ 1.03
SMARCD3-202ENST00000356800 UTRNP46939 3433 aa21.46■■□□□ 1.03
SMARCD3-202ENST00000356800 LMNB1P20700 586 aa21.46■■□□□ 1.03
SMARCD3-202ENST00000356800 TRDNQ13061 729 aa21.46■■□□□ 1.03
SMARCD3-202ENST00000356800 SLC4A8Q2Y0W8 1093 aa21.46■■□□□ 1.03
SMARCD3-202ENST00000356800 CYB5R4Q7L1T6 521 aa21.46■■□□□ 1.03
SMARCD3-202ENST00000356800 SOCS7O14512 581 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 PRC1O43663 620 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 LARGE1O95461 756 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 FGRP09769 529 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 MCM5P33992 734 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 PRMT6Q96LA8 375 aaPredicted RBP21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 AGXT2Q9BYV1 514 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 SLKQ9H2G2 1235 aaPredicted RBP21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 ZNF541Q9H0D2 1346 aa21.45■■□□□ 1.02
SMARCD3-202ENST00000356800 DDIT3P35638 169 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 RNF41Q9H4P4 317 aaPredicted RBP21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 CNNM2Q9H8M5 875 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 GPHNQ9NQX3 736 aaPredicted RBP21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 TPCN1Q9ULQ1 816 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 WDR19Q8NEZ3 1342 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 ROBO3Q96MS0 1386 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 SHTN1A0MZ66 631 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 HSP90AA1P07900 732 aaKnown RBP21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 PLCD1P51178 756 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 EIF6P56537 245 aaKnown RBP21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 NFIAQ12857 509 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 PICALMQ13492 652 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 ANKRD1Q15327 319 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 HDAC9Q9UKV0 1011 aa21.44■■□□□ 1.02
SMARCD3-202ENST00000356800 SPDYE2BA6NHP3 402 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 KDM4AO75164 1064 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 SPDYE6P0CI01 402 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 CACNB3P54284 484 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 CUL4AQ13619 759 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 RRP12Q5JTH9 1297 aaKnown RBP21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 FBXL16Q8N461 479 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 OGFOD1Q8N543 542 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 KRT23Q9C075 422 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 TDRD3Q9H7E2 651 aaKnown RBP21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 FOXD4L1Q9NU39 408 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 ZSWIM5Q9P217 1185 aa21.43■■□□□ 1.02
SMARCD3-202ENST00000356800 POLR3DP05423 398 aaPredicted RBP21.42■■□□□ 1.02
SMARCD3-202ENST00000356800 ME3Q16798 604 aa21.42■■□□□ 1.02
SMARCD3-202ENST00000356800 BRF1Q92994 677 aa21.42■■□□□ 1.02
SMARCD3-202ENST00000356800 PRDM1O75626 825 aa21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 PCP11498 1178 aaKnown RBP21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 RPS12P25398 132 aaKnown RBP21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 DYNLL2Q96FJ2 89 aa21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 IDI2Q9BXS1 227 aa21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 TOMM22Q9NS69 142 aa21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 FAM198AQ9UFP1 575 aa21.41■■□□□ 1.02
SMARCD3-202ENST00000356800 ORC4O43929 436 aa21.4■■□□□ 1.02
SMARCD3-202ENST00000356800 GMPSP49915 693 aaPredicted RBP21.4■■□□□ 1.02
SMARCD3-202ENST00000356800 DLGAP5Q15398 846 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms