RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 WWC1Q8IX03 1113 aa14.07□□□□□ -0.16
RTN3-204ENST00000354497 PIP4P2Q8N4L2 257 aa14.07□□□□□ -0.16
RTN3-204ENST00000354497 PICK1Q9NRD5 415 aa14.07□□□□□ -0.16
RTN3-204ENST00000354497 ZNF112Q9UJU3 913 aa14.07□□□□□ -0.16
RTN3-204ENST00000354497 FANCIQ9NVI1 1328 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 CXCL11O14625 94 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 NFIAQ12857 509 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 PXYLP1Q8TE99 480 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 COA7Q96BR5 231 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 GDF15Q99988 308 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 MRIQ9BWK5 157 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.06□□□□□ -0.16
RTN3-204ENST00000354497 PRKRIP1Q9H875 184 aaPredicted RBP14.06□□□□□ -0.16
RTN3-204ENST00000354497 STXBP5LQ9Y2K9 1186 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 ZHX2Q9Y6X8 837 aa14.06□□□□□ -0.16
RTN3-204ENST00000354497 MGAMO43451 1857 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 ZNF316A6NFI3 1004 aaPredicted RBP14.05□□□□□ -0.16
RTN3-204ENST00000354497 BMP8BP34820 402 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 DIXDC1Q155Q3 683 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 CDC42EP5Q6NZY7 148 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 SRCIN1Q9C0H9 1055 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 PAK6Q9NQU5 681 aaPredicted RBP14.05□□□□□ -0.16
RTN3-204ENST00000354497 SUGT1Q9Y2Z0 365 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 DAGLAQ9Y4D2 1042 aa14.05□□□□□ -0.16
RTN3-204ENST00000354497 A0A0G2JLL6 359 aaPredicted RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 VAMP4O75379 141 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 IFIT1P09914 478 aaKnown RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 CAPN2P17655 700 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 MAGEA10P43363 369 aaPredicted RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 EXOSC9Q06265 439 aaKnown RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 IRF5Q13568 498 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 GPR153Q6NV75 609 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 POTEHQ6S545 545 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 PRRT2Q7Z6L0 340 aaPredicted RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 ANKRD13CQ8N6S4 541 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 COL25A1Q9BXS0 654 aaPredicted RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 UBE2OQ9C0C9 1292 aaKnown RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 CRISPLD2Q9H0B8 497 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 USP40Q9NVE5 1235 aa14.04□□□□□ -0.16
RTN3-204ENST00000354497 SALL2Q9Y467 1007 aaPredicted RBP14.04□□□□□ -0.16
RTN3-204ENST00000354497 COL6A3P12111 3177 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 IL16Q14005 1332 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 TRIM75PA6NK02 468 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 ALDH1L1O75891 902 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 PDE8BO95263 885 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 CCDC27Q2M243 656 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 ZSCAN29Q8IWY8 852 aaPredicted RBP14.03□□□□□ -0.16
RTN3-204ENST00000354497 SCYL3Q8IZE3 742 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 TDHQ8IZJ6 230 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 BICC1Q9H694 974 aaKnown RBP14.03□□□□□ -0.16
RTN3-204ENST00000354497 C11orf49Q9H6J7 331 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 MTMR10Q9NXD2 777 aa14.03□□□□□ -0.16
RTN3-204ENST00000354497 LRRFIP2Q9Y608 721 aaKnown RBP14.03□□□□□ -0.16
RTN3-204ENST00000354497 AK9Q5TCS8 1911 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 PTPRAP18433 802 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 ZFPM1Q8IX07 1006 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 KLHDC4Q8TBB5 520 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 WDR66Q8TBY9 1149 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 NBPF3Q9H094 633 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 FAM198AQ9UFP1 575 aa14.02□□□□□ -0.16
RTN3-204ENST00000354497 ALPK3Q96L96 1907 aa14.02□□□□□ -0.17
RTN3-204ENST00000354497 NBPF7P0C2Y1 421 aaPredicted RBP14.01□□□□□ -0.17
RTN3-204ENST00000354497 PUM3Q15397 648 aaKnown RBP14.01□□□□□ -0.17
RTN3-204ENST00000354497 LRIT3Q3SXY7 679 aa14.01□□□□□ -0.17
RTN3-204ENST00000354497 ANKLE1Q8NAG6 615 aa14.01□□□□□ -0.17
RTN3-204ENST00000354497 KAZALD1Q96I82 304 aa14.01□□□□□ -0.17
RTN3-204ENST00000354497 AFG3L2Q9Y4W6 797 aa14.01□□□□□ -0.17
RTN3-204ENST00000354497 HMGCRP04035 888 aa14□□□□□ -0.17
RTN3-204ENST00000354497 SLC5A1P13866 664 aa14□□□□□ -0.17
RTN3-204ENST00000354497 TRIM32Q13049 653 aa14□□□□□ -0.17
RTN3-204ENST00000354497 CCDC84Q86UT8 332 aaPredicted RBP14□□□□□ -0.17
RTN3-204ENST00000354497 PHF6Q8IWS0 365 aaKnown RBP eCLIP14□□□□□ -0.17
RTN3-204ENST00000354497 VGLL2Q8N8G2 317 aa14□□□□□ -0.17
RTN3-204ENST00000354497 HMX1Q9NP08 348 aaPredicted RBP14□□□□□ -0.17
RTN3-204ENST00000354497 FRMD4AQ9P2Q2 1039 aaPredicted RBP14□□□□□ -0.17
RTN3-204ENST00000354497 SLC45A1Q9Y2W3 748 aa14□□□□□ -0.17
RTN3-204ENST00000354497 LDHBP07195 334 aaKnown RBP13.99□□□□□ -0.17
RTN3-204ENST00000354497 PRDX5P30044 214 aa13.99□□□□□ -0.17
RTN3-204ENST00000354497 RGS3P49796 1198 aa13.99□□□□□ -0.17
RTN3-204ENST00000354497 PNMA3Q9UL41 463 aa13.99□□□□□ -0.17
RTN3-204ENST00000354497 AGTPBP1Q9UPW5 1226 aa13.99□□□□□ -0.17
RTN3-204ENST00000354497 PHF20L1A8MW92 1017 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 SLURP2P0DP57 97 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 PICALMQ13492 652 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 TREML2Q5T2D2 321 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 FAM161BQ96MY7 647 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 RPTORQ8N122 1335 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 LAMA3Q16787 3333 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 DOCK2Q92608 1830 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 FAM110CQ1W6H9 321 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 ANKRD44Q8N8A2 993 aa13.98□□□□□ -0.17
RTN3-204ENST00000354497 DDX60LQ5H9U9 1706 aaKnown RBP13.97□□□□□ -0.17
RTN3-204ENST00000354497 KIF16BQ96L93 1317 aa13.97□□□□□ -0.17
RTN3-204ENST00000354497 ATRNL1Q5VV63 1379 aa13.97□□□□□ -0.17
RTN3-204ENST00000354497 FGFR2P21802 821 aa13.97□□□□□ -0.17
RTN3-204ENST00000354497 MDM2Q00987 491 aaPredicted RBP13.97□□□□□ -0.17
RTN3-204ENST00000354497 RABL6Q3YEC7 729 aaPredicted RBP13.97□□□□□ -0.17
RTN3-204ENST00000354497 LPIN2Q92539 896 aa13.97□□□□□ -0.17
RTN3-204ENST00000354497 CACNA1FO60840 1977 aa13.96□□□□□ -0.17
RTN3-204ENST00000354497 CTNND1O60716 968 aaKnown RBP13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms