RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SLC3A2P08195 630 aaKnown RBP18.26■□□□□ 0.51
HMGA1-202ENST00000347617 ADRA2BP18089 450 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 CEBPZQ03701 1054 aaKnown RBP18.26■□□□□ 0.51
HMGA1-202ENST00000347617 SLC27A3Q5K4L6 730 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 KBTBD3Q8NAB2 608 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 DSCC1Q9BVC3 393 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 NYXQ9GZU5 481 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 SCN7AQ01118 1682 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 TAF1LQ8IZX4 1826 aa18.26■□□□□ 0.51
HMGA1-202ENST00000347617 LRP5O75197 1615 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 COL9A3Q14050 684 aaPredicted RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 SF3B3Q15393 1217 aaKnown RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 KRT27Q7Z3Y8 459 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 MSL3Q8N5Y2 521 aaKnown RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 VGLL2Q8N8G2 317 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 ST7Q9NRC1 585 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 CNNM1Q9NRU3 951 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 NAP1L2Q9ULW6 460 aaPredicted RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 PDE8BO95263 885 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 CYP21A2P08686 494 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 CAPN2P17655 700 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 FANCCQ00597 558 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 EXOSC10Q01780 885 aaKnown RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 STK38Q15208 465 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 SF3A1Q15459 793 aaKnown RBP18.25■□□□□ 0.51
HMGA1-202ENST00000347617 METTL24Q5JXM2 366 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 TRIM65Q6PJ69 517 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 EXOC4Q96A65 974 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 HELLSQ9NRZ9 838 aa18.25■□□□□ 0.51
HMGA1-202ENST00000347617 ARHGAP6O43182 974 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 ZPR1O75312 459 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 CTDNEP1O95476 244 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 PDE4CQ08493 712 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 FAM182BQ5T319 152 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 LINC00301Q8NCQ3 95 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 XAGE2Q96GT9 111 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 EFCC1Q9HA90 598 aa18.24■□□□□ 0.51
HMGA1-202ENST00000347617 DDX60Q8IY21 1712 aaKnown RBP18.24■□□□□ 0.51
HMGA1-202ENST00000347617 RIC1Q4ADV7 1423 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 GNPATO15228 680 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 NPHP1O15259 732 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 IFIT1P09914 478 aaKnown RBP18.23■□□□□ 0.51
HMGA1-202ENST00000347617 RAD51AP2Q09MP3 1159 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 NCAPHQ15003 741 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 DPCR1Q3MIW9 517 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 CTR9Q6PD62 1173 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 IQUBQ8NA54 791 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 RABGGTAQ92696 567 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 ARFGAP3Q9NP61 516 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 PAG1Q9NWQ8 432 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 FEZ2Q9UHY8 353 aaPredicted RBP18.23■□□□□ 0.51
HMGA1-202ENST00000347617 CARMIL3Q8ND23 1372 aa18.23■□□□□ 0.51
HMGA1-202ENST00000347617 POTEB2H3BUK9 544 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 URI1O94763 535 aaPredicted RBP18.22■□□□□ 0.51
HMGA1-202ENST00000347617 EVCP57679 992 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 CC2D1AQ6P1N0 951 aaPredicted RBP18.22■□□□□ 0.51
HMGA1-202ENST00000347617 CCDC85AQ96PX6 553 aaPredicted RBP18.22■□□□□ 0.51
HMGA1-202ENST00000347617 PARP3Q9Y6F1 533 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 DHX16O60231 1041 aaKnown RBP18.22■□□□□ 0.51
HMGA1-202ENST00000347617 CMA1P23946 247 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 TUBB2AQ13885 445 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 BRD3Q15059 726 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 TRAPPC3LQ5T215 181 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 GORABQ5T7V8 394 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 REXO1L1PQ8IX06 675 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 GOLGA5Q8TBA6 731 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 ARHGEF1Q92888 912 aaKnown RBP18.22■□□□□ 0.51
HMGA1-202ENST00000347617 SETDB2Q96T68 719 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 TUBB2BQ9BVA1 445 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 C4BP0C0L5 1744 aa18.22■□□□□ 0.51
HMGA1-202ENST00000347617 SPTLC2O15270 562 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 TBC1D8O95759 1140 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 FGFR2P21802 821 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 NDUFA8P51970 172 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 KCNQ4P56696 695 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 VSTM4Q8IW00 320 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 LPIN2Q92539 896 aa18.21■□□□□ 0.51
HMGA1-202ENST00000347617 CDC5LQ99459 802 aaKnown RBP18.21■□□□□ 0.51
HMGA1-202ENST00000347617 ZBTB22O15209 634 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 OAS2P29728 719 aaKnown RBP18.2■□□□□ 0.5
HMGA1-202ENST00000347617 CASQ1P31415 396 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 IGHMBP2P38935 993 aaKnown RBP18.2■□□□□ 0.5
HMGA1-202ENST00000347617 MAP3K9P80192 1104 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 MYL5Q02045 173 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 SMC1AQ14683 1233 aaKnown RBP18.2■□□□□ 0.5
HMGA1-202ENST00000347617 PUM3Q15397 648 aaKnown RBP18.2■□□□□ 0.5
HMGA1-202ENST00000347617 TTC39AQ5SRH9 613 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 TBC1D9BQ66K14 1250 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 CARD6Q9BX69 1037 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 TUBE1Q9UJT0 475 aa18.2■□□□□ 0.5
HMGA1-202ENST00000347617 ZNF202O95125 648 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 ZFYP08048 801 aaPredicted RBP18.19■□□□□ 0.5
HMGA1-202ENST00000347617 UBASH3AP57075 661 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 COL24A1Q17RW2 1714 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 TPTE2Q6XPS3 522 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 RSRC2Q7L4I2 434 aaKnown RBP18.19■□□□□ 0.5
HMGA1-202ENST00000347617 LRRN4CLQ8ND94 238 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 FTOQ9C0B1 505 aaKnown RBP eCLIP18.19■□□□□ 0.5
HMGA1-202ENST00000347617 RASSF4Q9H2L5 321 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 NEDD4P46934 1319 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms