RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DEAF1O75398 565 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 RSPH10BP0C881 870 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 TMED10P49755 219 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 FAM178BQ8IXR5 827 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CABLES1Q8TDN4 633 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 METTL14Q9HCE5 456 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 CEP126Q9P2H0 1117 aa8.49□□□□□ -1.05
LIMCH1-201ENST00000313860 FAM177BA6PVY3 158 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 LCA5LO95447 670 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 TCF3P15923 654 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 RASSF2P50749 326 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 RUNDC3AQ59EK9 446 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 TEX11Q8IYF3 940 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 FAM71BQ8TC56 605 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 NLRP6P59044 892 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 HSP90AA4PQ58FG1 418 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 KRT77Q7Z794 578 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 NOSTRINQ8IVI9 506 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 OGFOD1Q8N543 542 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 WDR48Q8TAF3 677 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 MGARPQ8TDB4 240 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 RAPGEF5Q92565 580 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 CCDC94Q9BW85 323 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 SYNDIG1LA6NDD5 238 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 MCF2LO15068 1137 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 SRGAP3O43295 1099 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 DKC1O60832 514 aaKnown RBP eCLIP8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 ANKRD20A4Q4UJ75 823 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 ANKRD20A8PQ5CZ79 823 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 ANKRD20A2Q5SQ80 823 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 ANKRD20A1Q5TYW2 823 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 NLRP7Q8WX94 980 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 MAML3Q96JK9 1138 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 MTA3Q9BTC8 594 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 PARVBQ9HBI1 364 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 THAP12O43422 761 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 BFSP2Q13515 415 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 E2F5Q15329 346 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 TJAP1Q5JTD0 557 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 RUFY4Q6ZNE9 571 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 USP33Q8TEY7 942 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 POMGNT1Q8WZA1 660 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 CCT7Q99832 543 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 TSGA10Q9BZW7 698 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 SAP30BPQ9UHR5 308 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 GAS8O95995 478 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 MCM7P33993 719 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 NUP62P37198 522 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 UNC45AQ9H3U1 944 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 DISC1Q9NRI5 854 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 STRIP2Q9ULQ0 834 aa8.48□□□□□ -1.05
LIMCH1-201ENST00000313860 ZNF263O14978 683 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 ITIH3Q06033 890 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 HDAC1Q13547 482 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 TRIM22Q8IYM9 498 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 N4BP2L2Q92802 583 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 ZNF496Q96IT1 587 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 SELENOOQ9BVL4 669 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 GNAT2P19087 354 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 SLC9A1P19634 815 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 LMNB1P20700 586 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CCDC142Q17RM4 750 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 COLGALT2Q8IYK4 626 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 DYDC2Q96IM9 177 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CYP46A1Q9Y6A2 500 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 PDXDC1Q6P996 788 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 UBE2Q1Q7Z7E8 422 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 DCLK2Q8N568 766 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CHMP1AQ9HD42 196 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 GOLGA8MH3BSY2 632 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 ARHGDIAP52565 204 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 LRRC59Q96AG4 307 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CCDC124Q96CT7 223 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 MRPL40Q9NQ50 206 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 MID2Q9UJV3 735 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 I3L4J1 428 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 ARL3P36405 182 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 NEK4P51957 841 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 PPFIA1Q13136 1202 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CBFBQ13951 182 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CCDC88BA6NC98 1476 aa8.47□□□□□ -1.05
LIMCH1-201ENST00000313860 CAVIN2O95810 425 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 FOXD1Q16676 465 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 CEP55Q53EZ4 464 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 PPP4R3CPQ6ZMV5 832 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 IFT20Q8IY31 132 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 GIPC2Q8TF65 315 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 SRCIN1Q9C0H9 1055 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 E7EVH7 732 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 KRT1P04264 644 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 SLC3A2P08195 630 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 ITGB3BPQ13352 177 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 USH1GQ495M9 461 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 NECAB1Q8N987 351 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 WDR60Q8WVS4 1066 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 FSD1Q9BTV5 496 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 CCDC90BQ9GZT6 254 aa8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 DHX36Q9H2U1 1008 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-201ENST00000313860 GOLGA8CPA6NN73 597 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 TTC4O95801 387 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms