RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 BRDTQ58F21 947 aaPredicted RBP15.58■□□□□ 0.09
LDLR-201ENST00000252444 HAUS3Q68CZ6 603 aa15.58■□□□□ 0.09
LDLR-201ENST00000252444 PODNQ7Z5L7 613 aa15.58■□□□□ 0.09
LDLR-201ENST00000252444 ZHX3Q9H4I2 956 aa15.58■□□□□ 0.09
LDLR-201ENST00000252444 USP42Q9H9J4 1324 aaKnown RBP15.58■□□□□ 0.08
LDLR-201ENST00000252444 TAF5LO75529 589 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 EIF5P55010 431 aaKnown RBP15.58■□□□□ 0.08
LDLR-201ENST00000252444 SUSD4Q5VX71 490 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 PDILTQ8N807 584 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 TOP1P11387 765 aaKnown RBP15.58■□□□□ 0.08
LDLR-201ENST00000252444 TTLL5Q6EMB2 1281 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 IFNL3Q8IZI9 196 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 EXOC1Q9NV70 894 aa15.58■□□□□ 0.08
LDLR-201ENST00000252444 BICDL2A1A5D9 508 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 STYK1Q6J9G0 422 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 CSADQ9Y600 493 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 ADD2P35612 726 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 MCF2L2Q86YR7 1114 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 TANGO6Q9C0B7 1094 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 KAT6BQ8WYB5 2073 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 COL14A1Q05707 1796 aaKnown RBP15.57■□□□□ 0.08
LDLR-201ENST00000252444 GOLGA6L9A6NEM1 432 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 KIF4AO95239 1232 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 SYKP43405 635 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 ZNF34Q8IZ26 560 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 GJA3Q9Y6H8 435 aa15.57■□□□□ 0.08
LDLR-201ENST00000252444 GTF2IP78347 998 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 RAB3GAP1Q15042 981 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 ASPRV1Q53RT3 343 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 GPATCH4Q5T3I0 446 aaKnown RBP15.56■□□□□ 0.08
LDLR-201ENST00000252444 AATFQ9NY61 560 aaKnown RBP eCLIP15.56■□□□□ 0.08
LDLR-201ENST00000252444 FERMT2Q96AC1 680 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 ZMYM6O95789 1325 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 SPTLC2O15270 562 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 TUBB4AP04350 444 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 DCPSQ96C86 337 aaKnown RBP15.56■□□□□ 0.08
LDLR-201ENST00000252444 GRPEL1Q9HAV7 217 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 USP17L3A6NCW0 530 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 USP17L4A6NCW7 530 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 CETN2P41208 172 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 USP17L1Q7RTZ2 530 aa15.56■□□□□ 0.08
LDLR-201ENST00000252444 ADCY9O60503 1353 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 ADCY7P51828 1080 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 DEF6Q9H4E7 631 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 ZSWIM6Q9HCJ5 1215 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 E7EWF7 191 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 STAT6P42226 847 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 BTDP43251 543 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 ZSCAN10Q96SZ4 725 aaPredicted RBP15.55■□□□□ 0.08
LDLR-201ENST00000252444 ZSCAN12O43309 604 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 FOXP4Q8IVH2 680 aaPredicted RBP15.55■□□□□ 0.08
LDLR-201ENST00000252444 MAP4K1Q92918 833 aa15.55■□□□□ 0.08
LDLR-201ENST00000252444 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.55■□□□□ 0.08
LDLR-201ENST00000252444 LRRC24Q50LG9 513 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 FOSP01100 380 aaPredicted RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 APOBRQ0VD83 1088 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 KRI1Q8N9T8 703 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 MNS1Q8NEH6 495 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 ELP1O95163 1332 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 CHD2O14647 1828 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 MATR3P43243 847 aaKnown RBP eCLIP15.54■□□□□ 0.08
LDLR-201ENST00000252444 NAP1L1P55209 391 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 PDCL3Q9H2J4 239 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 DBNLQ9UJU6 430 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 PFKFB2O60825 505 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 NCBP1Q09161 790 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 OTUD7BQ6GQQ9 843 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 DTHD1Q6ZMT9 781 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 FERMT3Q86UX7 667 aa15.54■□□□□ 0.08
LDLR-201ENST00000252444 MRPL11Q9Y3B7 192 aaKnown RBP15.54■□□□□ 0.08
LDLR-201ENST00000252444 ABCD1P33897 745 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 KLHDC4Q8TBB5 520 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 BCS1LQ9Y276 419 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 CUTAO60888 179 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 ALX1Q15699 326 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 IQUBQ8NA54 791 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 VPS33BQ9H267 617 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 VAT1LQ9HCJ6 419 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 IGKV5-2P06315 115 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 IQCDQ96DY2 449 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 B4E1Z4 1266 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 MMP10P09238 476 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 MTERF4Q7Z6M4 381 aaKnown RBP15.53■□□□□ 0.08
LDLR-201ENST00000252444 ARHGEF1Q92888 912 aaKnown RBP15.53■□□□□ 0.08
LDLR-201ENST00000252444 MAGEF1Q9HAY2 307 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 GINM1Q9NU53 330 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 MEGF6O75095 1541 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 LAD1O00515 517 aa15.53■□□□□ 0.08
LDLR-201ENST00000252444 HSPD1P10809 573 aaKnown RBP15.53■□□□□ 0.08
LDLR-201ENST00000252444 NONOQ15233 471 aaKnown RBP eCLIP15.53■□□□□ 0.084e-8■□□□□ 10.1
LDLR-201ENST00000252444 KDM3AQ9Y4C1 1321 aa15.52■□□□□ 0.08
LDLR-201ENST00000252444 SLC1A4P43007 532 aa15.52■□□□□ 0.08
LDLR-201ENST00000252444 CIAPIN1Q6FI81 312 aa15.52■□□□□ 0.08
LDLR-201ENST00000252444 MARCH10Q8NA82 808 aaPredicted RBP15.52■□□□□ 0.08
LDLR-201ENST00000252444 PIBF1Q8WXW3 757 aa15.52■□□□□ 0.08
LDLR-201ENST00000252444 TTC14Q96N46 770 aa15.52■□□□□ 0.08
LDLR-201ENST00000252444 PARP4Q9UKK3 1724 aaKnown RBP15.52■□□□□ 0.08
LDLR-201ENST00000252444 FNBP4Q8N3X1 1017 aaPredicted RBP15.52■□□□□ 0.08
LDLR-201ENST00000252444 SCLT1Q96NL6 688 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms