RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 MCMDC2Q4G0Z9 681 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 TTC22Q5TAA0 569 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 KRT79Q5XKE5 535 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 LEO1Q8WVC0 666 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-201ENST00000011700 TSC1Q92574 1164 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 SAMM50Q9Y512 469 aa6.77□□□□□ -1.33
VPS13D-201ENST00000011700 CCDC63Q8NA47 563 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 MLKLQ8NB16 471 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 EFHD1Q9BUP0 239 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 PLB1Q6P1J6 1458 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 AKR1B15C9JRZ8 316 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 TSPY3P0CV98 308 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 TSPY8P0CW00 308 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 FOSBP53539 338 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 STK3Q13188 491 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 A0A1B0GW55 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 ZBTB24O43167 697 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L2P0CJ85 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L3P0CJ86 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L4P0CJ87 422 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L5P0CJ88 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L6P0CJ89 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4L7P0CJ90 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 INPP5BP32019 993 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 KRT2P35908 639 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 CEP57Q86XR8 500 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 DUX4Q9UBX2 424 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 MAP1BP46821 2468 aaKnown RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 TSPY2A6NKD2 308 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 KPNA2P52292 529 aaKnown RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 SATB1Q01826 763 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 PDXDC1Q6P996 788 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 TTC25Q96NG3 672 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 UBE4BO95155 1302 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 KNL1Q8NG31 2342 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 ARHGEF37A1IGU5 675 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 RNF40O75150 1001 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 RUBCNQ92622 972 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 TSPYL2Q9H2G4 693 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 FAF1Q9UNN5 650 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-201ENST00000011700 SENP3-EIF4A1A0A087X0R7 540 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 CDC37L1Q7L3B6 337 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 GJB2P29033 226 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 CHMP4BP1P59074 171 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 PRR16Q569H4 304 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 PPP1R21Q6ZMI0 780 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD2Q9GZV1 360 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 ITSN1Q15811 1721 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 ATP6V1E1P36543 226 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 NDUFAB1O14561 156 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 SPTLC2O15270 562 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 FOXP2O15409 715 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 HIP1RO75146 1068 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 NBPF9Q3BBW0 867 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 C8orf74Q6P047 294 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 NECTIN2Q92692 538 aa6.76□□□□□ -1.33
VPS13D-201ENST00000011700 E7EVH7 732 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 ESRRGP62508 458 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 RBM10P98175 930 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 PHLPP2Q6ZVD8 1323 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 RSPH3Q86UC2 560 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TRIM11Q96F44 468 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 ZKSCAN3Q9BRR0 538 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 UBA5Q9GZZ9 404 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 UGGT2Q9NYU1 1516 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 RANBP6O60518 1105 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TAF11Q15544 211 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 DBN1Q16643 649 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 MIER3Q7Z3K6 550 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TMEM87BQ96K49 555 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 FAM96AQ9H5X1 160 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 DDX5P17844 614 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 CEP85LQ5SZL2 805 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 GKAP1Q5VSY0 366 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 ANKRD20A3Q5VUR7 823 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 BAG1Q99933 345 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 KDM5BQ9UGL1 1544 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TNNI2P48788 182 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 MYL5Q02045 173 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TMCO5AQ8N6Q1 288 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 PRPF38AQ8NAV1 312 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 DDX27Q96GQ7 796 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 NAPGQ99747 312 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 CCT6AP40227 531 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 FAM160A1Q05DH4 1040 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 FLIIQ13045 1269 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 PLCB4Q15147 1175 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 CAMK4Q16566 473 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 SMC5Q8IY18 1101 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 GPATCH11Q8N954 259 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 ZNF526Q8TF50 670 aaPredicted RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 KIFC3Q9BVG8 833 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 CNOT10Q9H9A5 744 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TROVE2P10155 538 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 POLR2BP30876 1174 aaKnown RBP6.75□□□□□ -1.33
VPS13D-201ENST00000011700 PPP2R5DQ14738 602 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 FANCAO15360 1455 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 MCF2L2Q86YR7 1114 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 TMEM57Q8N5G2 664 aa6.75□□□□□ -1.33
VPS13D-201ENST00000011700 CCDC89Q8N998 374 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms