RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 IGDCC4Q8TDY8 1250 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 ISCA1Q9BUE6 129 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 ATG3Q9NT62 314 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 SERTAD1Q9UHV2 236 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 TRPM3Q9HCF6 1732 aaPredicted RBP16.12■□□□□ 0.17
USH1C-201ENST00000005226 A0A0U1RQJ8 604 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 POLR2DO15514 142 aaKnown RBP16.12■□□□□ 0.17
USH1C-201ENST00000005226 ZRANB2O95218 330 aaKnown RBP eCLIP16.12■□□□□ 0.17
USH1C-201ENST00000005226 TEX35Q5T0J7 233 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 JMYQ8N9B5 988 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 ATRIPQ8WXE1 791 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 BAG1Q99933 345 aaPredicted RBP16.12■□□□□ 0.17
USH1C-201ENST00000005226 GREM2Q9H772 168 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 SAMSN1Q9NSI8 373 aaKnown RBP16.12■□□□□ 0.17
USH1C-201ENST00000005226 MAN1B1Q9UKM7 699 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 NFE2L3Q9Y4A8 694 aa16.12■□□□□ 0.17
USH1C-201ENST00000005226 SASH3O75995 380 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 TOB1P50616 345 aaPredicted RBP16.11■□□□□ 0.17
USH1C-201ENST00000005226 TRIM29Q14134 588 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 RRP12Q5JTH9 1297 aaKnown RBP16.11■□□□□ 0.17
USH1C-201ENST00000005226 ZCRB1Q8TBF4 217 aaKnown RBP16.11■□□□□ 0.17
USH1C-201ENST00000005226 CCDC34Q96HJ3 373 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 MED15Q96RN5 788 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 C19orf44Q9H6X5 657 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 PHKA1P46020 1223 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 LY9Q9HBG7 655 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 ZSWIM5Q9P217 1185 aa16.11■□□□□ 0.17
USH1C-201ENST00000005226 CUTAO60888 179 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 CASQ1P31415 396 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 MDM2Q00987 491 aaPredicted RBP16.1■□□□□ 0.17
USH1C-201ENST00000005226 CPLX3Q8WVH0 158 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 CNNM1Q9NRU3 951 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 COBLO75128 1261 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 ITGA6P23229 1130 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 CASP1P29466 404 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 NR5A1Q13285 461 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 CPLX2Q6PUV4 134 aaKnown RBP16.1■□□□□ 0.17
USH1C-201ENST00000005226 TOM1L2Q6ZVM7 507 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 TC2NQ8N9U0 490 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.1■□□□□ 0.17
USH1C-201ENST00000005226 TOMM22Q9NS69 142 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 RIPOR2Q9Y4F9 1068 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 TJP1Q07157 1748 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 GLI3P10071 1580 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 LMTK3Q96Q04 1460 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 TMEM94Q12767 1356 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 IFIT3O14879 490 aaKnown RBP16.1■□□□□ 0.17
USH1C-201ENST00000005226 CDKL5O76039 1030 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 GYS2P54840 703 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 HLFQ16534 295 aa16.1■□□□□ 0.17
USH1C-201ENST00000005226 KRI1Q8N9T8 703 aaKnown RBP16.1■□□□□ 0.17
USH1C-201ENST00000005226 ZSCAN12O43309 604 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 PDE6AP16499 860 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 PCDHB6Q9Y5E3 794 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 ARHGAP6O43182 974 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 CCP110O43303 1012 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 PRKAB2O43741 272 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 STX17P56962 302 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 ST5P78524 1137 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 SSRP1Q08945 709 aaKnown RBP16.09■□□□□ 0.17
USH1C-201ENST00000005226 TBX2Q13207 712 aaPredicted RBP16.09■□□□□ 0.17
USH1C-201ENST00000005226 TICAM2Q86XR7 235 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 DIS3L2Q8IYB7 885 aaKnown RBP16.09■□□□□ 0.17
USH1C-201ENST00000005226 NEK11Q8NG66 645 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 OXER1Q8TDS5 423 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 SLC12A7Q9Y666 1083 aa16.09■□□□□ 0.17
USH1C-201ENST00000005226 ATF3P18847 181 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 POSTNQ15063 836 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 DHX58Q96C10 678 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 MRPL44Q9H9J2 332 aaKnown RBP16.08■□□□□ 0.16
USH1C-201ENST00000005226 ARGLU1Q9NWB6 273 aaPredicted RBP16.08■□□□□ 0.16
USH1C-201ENST00000005226 C4AP0C0L4 1744 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 C4BP0C0L5 1744 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 FAM237AA0A1B0GTK4 181 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 EFCAB8A8MWE9 144 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 TEX33O43247 280 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 CSF1RP07333 972 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 KLHL10Q6JEL2 608 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 NOSTRINQ8IVI9 506 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 TTLL11Q8NHH1 800 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 ARMT1Q9H993 441 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 EPB41L4AQ9HCS5 686 aaPredicted RBP16.08■□□□□ 0.16
USH1C-201ENST00000005226 LZTFL1Q9NQ48 299 aa16.08■□□□□ 0.16
USH1C-201ENST00000005226 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.08■□□□□ 0.16
USH1C-201ENST00000005226 FAM205CA6NFA0 338 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 TBC1D8O95759 1140 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 CYP2C19P33261 490 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 MAP3K9P80192 1104 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 PPP2R3AQ06190 1150 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 AIDAQ96BJ3 306 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 STRBPQ96SI9 672 aaKnown RBP16.07■□□□□ 0.16
USH1C-201ENST00000005226 hCG_1642624A0A1W2PR95 340 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 SOWAHDA6NJG2 315 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 TFRCP02786 760 aaKnown RBP16.07■□□□□ 0.16
USH1C-201ENST00000005226 HNRNPH2P55795 449 aaKnown RBP16.07■□□□□ 0.16
USH1C-201ENST00000005226 SPECC1LQ69YQ0 1117 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 PODXL2Q9NZ53 605 aa16.07■□□□□ 0.16
USH1C-201ENST00000005226 FBXO2Q9UK22 296 aaPredicted RBP16.07■□□□□ 0.16
USH1C-201ENST00000005226 WDR19Q8NEZ3 1342 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms