RNA–Protein interactions for RNA: snR58

snR58, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR58, Length 96 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR58	snR58	YEL023C	P39992	682 aa		0.65	□□□□□ -2.31
snR58	snR58	YDR444W	Q04093	687 aa		0.65	□□□□□ -2.31
snR58	snR58	YML082W	Q04533	649 aa	Known RBP	0.64	□□□□□ -2.31
snR58	snR58	TRK2	P28584	889 aa		0.63	□□□□□ -2.31
snR58	snR58	CLA4	P48562	842 aa		0.63	□□□□□ -2.31
snR58	snR58	PTC2	P39966	464 aa	Known RBP	0.62	□□□□□ -2.31
snR58	snR58	MID1	P41821	548 aa		0.62	□□□□□ -2.31
snR58	snR58	YPR015C	Q12531	247 aa		0.62	□□□□□ -2.31
snR58	snR58	VMA1	P17255	1071 aa	Known RBP	0.6	□□□□□ -2.31
snR58	snR58	SAM3	Q08986	587 aa		0.6	□□□□□ -2.31
snR58	snR58	HTA1	P04911	132 aa	Known RBP	0.59	□□□□□ -2.31
snR58	snR58	HTA2	P04912	132 aa		0.59	□□□□□ -2.31
snR58	snR58	DCW1	P36091	449 aa		0.59	□□□□□ -2.31
snR58	snR58	BNI4	P53858	892 aa		0.59	□□□□□ -2.31
snR58	snR58	LCB5	Q06147	687 aa	Known RBP	0.59	□□□□□ -2.31
snR58	snR58	PUS1	Q12211	544 aa	Known RBP	0.59	□□□□□ -2.31
snR58	snR58	ICP55	P40051	511 aa		0.58	□□□□□ -2.32
snR58	snR58	HAP5	Q02516	242 aa		0.58	□□□□□ -2.32
snR58	snR58	RIM101	P33400	625 aa		0.56	□□□□□ -2.32
snR58	snR58	CAF120	P53836	1060 aa		0.56	□□□□□ -2.32
snR58	snR58	GIS1	Q03833	894 aa		0.56	□□□□□ -2.32
snR58	snR58	GLT1	Q12680	2145 aa	Known RBP	0.55	□□□□□ -2.32
snR58	snR58	YFR006W	P43590	535 aa		0.55	□□□□□ -2.32
snR58	snR58	GYP1	Q08484	637 aa		0.55	□□□□□ -2.32
snR58	snR58	YGR035C	P53222	116 aa		0.54	□□□□□ -2.32
snR58	snR58	GYP5	Q12344	894 aa		0.54	□□□□□ -2.32
snR58	snR58	MDJ1	P35191	511 aa		0.53	□□□□□ -2.32
snR58	snR58	YEL077C	Q3E7X8	1277 aa		0.53	□□□□□ -2.32
snR58	snR58	SBP1	P10080	294 aa	Known RBP	0.52	□□□□□ -2.33
snR58	snR58	CCT8	P47079	568 aa	Known RBP	0.52	□□□□□ -2.33
snR58	snR58	ABP1	P15891	592 aa	Known RBP	0.51	□□□□□ -2.33
snR58	snR58	DBP1	P24784	617 aa	Known RBP	0.51	□□□□□ -2.33
snR58	snR58	HPF1	Q05164	967 aa		0.51	□□□□□ -2.33
snR58	snR58	RAM1	P22007	431 aa		0.5	□□□□□ -2.33
snR58	snR58	BBC1	P47068	1157 aa		0.5	□□□□□ -2.33
snR58	snR58	CST6	P40535	587 aa		0.48	□□□□□ -2.33
snR58	snR58	YPL034W	Q03083	165 aa		0.48	□□□□□ -2.33
snR58	snR58	AI2	P03876	854 aa		0.47	□□□□□ -2.33
snR58	snR58	STS1	P38637	319 aa		0.47	□□□□□ -2.33
snR58	snR58	RRD1	P40454	393 aa	Known RBP	0.47	□□□□□ -2.33
snR58	snR58	IRC24	P40580	263 aa		0.47	□□□□□ -2.33
snR58	snR58	PHM7	Q12252	991 aa		0.47	□□□□□ -2.33
snR58	snR58	ACO2	P39533	789 aa		0.46	□□□□□ -2.34
snR58	snR58	CDC4	P07834	779 aa		0.45	□□□□□ -2.34
snR58	snR58	DIP2	Q12220	943 aa	Predicted RBP	0.45	□□□□□ -2.34
snR58	snR58	YPR204W	Q08995	1032 aa		0.44	□□□□□ -2.34
snR58	snR58	YIR007W	P40566	764 aa		0.43	□□□□□ -2.34
snR58	snR58	YMR1	P47147	688 aa	Known RBP RIP-Chip data	0.43	□□□□□ -2.34	not detected
snR58	snR58	MPC54	Q08550	464 aa		0.43	□□□□□ -2.34
snR58	snR58	PTP3	P40048	928 aa		0.42	□□□□□ -2.34
snR58	snR58	NMA111	P53920	997 aa		0.42	□□□□□ -2.34
snR58	snR58	VPS29	P38759	282 aa		0.41	□□□□□ -2.34
snR58	snR58	NSG2	P53898	299 aa		0.41	□□□□□ -2.34
snR58	snR58	SAS4	Q04003	481 aa		0.41	□□□□□ -2.34
snR58	snR58	MRM1	P25270	412 aa		0.4	□□□□□ -2.35
snR58	snR58	LAM6	Q08001	693 aa		0.4	□□□□□ -2.35
snR58	snR58	NST1	P53935	1240 aa		0.39	□□□□□ -2.35
snR58	snR58	ILV3	P39522	585 aa	Known RBP	0.38	□□□□□ -2.35
snR58	snR58	PDR1	P12383	1068 aa		0.37	□□□□□ -2.35
snR58	snR58	MRF1	P30775	413 aa	Predicted RBP	0.37	□□□□□ -2.35
snR58	snR58	ASH1	P34233	588 aa		0.37	□□□□□ -2.35
snR58	snR58	YFL066C	P43538	392 aa		0.37	□□□□□ -2.35
snR58	snR58	FRK1	Q03002	865 aa	Predicted RBP	0.37	□□□□□ -2.35
snR58	snR58	MAC1	P35192	417 aa		0.36	□□□□□ -2.35
snR58	snR58	ERG12	P07277	443 aa		0.35	□□□□□ -2.35
snR58	snR58	YJR115W	P47152	169 aa		0.35	□□□□□ -2.35
snR58	snR58	THI72	Q08579	599 aa		0.35	□□□□□ -2.35
snR58	snR58	MET32	Q12041	191 aa		0.35	□□□□□ -2.35
snR58	snR58	OPT2	Q06593	877 aa		0.34	□□□□□ -2.36
snR58	snR58	RSM7	P47150	247 aa		0.33	□□□□□ -2.36
snR58	snR58	YPR053C	Q6Q5F3	151 aa		0.33	□□□□□ -2.36
snR58	snR58	AVT1	P47082	602 aa		0.32	□□□□□ -2.36
snR58	snR58	AFT1	P22149	690 aa		0.31	□□□□□ -2.36
snR58	snR58	YPT53	P36019	220 aa		0.31	□□□□□ -2.36
snR58	snR58	SOL3	P38858	249 aa		0.31	□□□□□ -2.36
snR58	snR58	SKN7	P38889	622 aa		0.31	□□□□□ -2.36
snR58	snR58	MPH3	P0CE00	602 aa		0.3	□□□□□ -2.36
snR58	snR58	YIL055C	P40523	627 aa	Known RBP	0.3	□□□□□ -2.36
snR58	snR58	BDP1	P46678	594 aa		0.3	□□□□□ -2.36
snR58	snR58	DPL1	Q05567	589 aa		0.3	□□□□□ -2.36
snR58	snR58	GRE2	Q12068	342 aa	Known RBP	0.3	□□□□□ -2.36
snR58	snR58	HST3	P53687	447 aa		0.29	□□□□□ -2.36
snR58	snR58	HED1	Q03937	162 aa		0.29	□□□□□ -2.36
snR58	snR58	DPH6	Q12429	685 aa		0.29	□□□□□ -2.36
snR58	snR58	AI4	P03878	556 aa		0.28	□□□□□ -2.36
snR58	snR58	BUD20	Q08004	166 aa	Predicted RBP	0.28	□□□□□ -2.36
snR58	snR58	ALO1	P54783	526 aa	Known RBP	0.27	□□□□□ -2.37
snR58	snR58	TY1A-BL	Q12266	440 aa		0.27	□□□□□ -2.37
snR58	snR58	PRT1	P06103	763 aa	Known RBP	0.26	□□□□□ -2.37
snR58	snR58	AMN1	P38285	549 aa	Predicted RBP	0.26	□□□□□ -2.37
snR58	snR58	SCW11	P53189	542 aa		0.26	□□□□□ -2.37
snR58	snR58	TRM1	P15565	570 aa	Known RBP	0.25	□□□□□ -2.37
snR58	snR58	GLY1	P37303	387 aa	Known RBP	0.25	□□□□□ -2.37
snR58	snR58	SLI15	P38283	698 aa		0.25	□□□□□ -2.37
snR58	snR58	JJJ3	P47138	172 aa		0.25	□□□□□ -2.37
snR58	snR58	PSD2	P53037	1138 aa	Known RBP	0.25	□□□□□ -2.37
snR58	snR58	TDA6	Q06466	467 aa		0.25	□□□□□ -2.37
snR58	snR58	MCA1	Q08601	432 aa		0.25	□□□□□ -2.37
snR58	snR58	ISU2	Q12056	156 aa		0.25	□□□□□ -2.37
snR58	snR58	CCP1	P00431	361 aa		0.24	□□□□□ -2.37

Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms