RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeastyeast

Gene SHH3, Length 591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH3YMR118C STS1P38637 319 aa5.81□□□□□ -1.48
SHH3YMR118C PTC4P38089 393 aa5.8□□□□□ -1.48
SHH3YMR118C DPS1P04802 557 aaKnown RBP5.79□□□□□ -1.48
SHH3YMR118C HTA1P04911 132 aaKnown RBP5.77□□□□□ -1.49
SHH3YMR118C HTA2P04912 132 aa5.77□□□□□ -1.49
SHH3YMR118C GYP5Q12344 894 aa5.77□□□□□ -1.49
SHH3YMR118C RCR1P38212 213 aa5.76□□□□□ -1.49
SHH3YMR118C RGA1P39083 1007 aa5.75□□□□□ -1.49
SHH3YMR118C YEL023CP39992 682 aa5.74□□□□□ -1.49
SHH3YMR118C DCW1P36091 449 aa5.73□□□□□ -1.49
SHH3YMR118C ELP4Q02884 456 aaKnown RBP5.71□□□□□ -1.5
SHH3YMR118C YDR344CQ05510 147 aa5.67□□□□□ -1.5
SHH3YMR118C PML39Q03760 334 aa5.65□□□□□ -1.5
SHH3YMR118C SRC1Q03707 834 aa5.63□□□□□ -1.51
SHH3YMR118C ARH1P48360 493 aa5.61□□□□□ -1.51
SHH3YMR118C GRE2Q12068 342 aaKnown RBP5.58□□□□□ -1.52
SHH3YMR118C SGS1P35187 1447 aa5.57□□□□□ -1.52
SHH3YMR118C MIF2P35201 549 aa5.57□□□□□ -1.52
SHH3YMR118C SPT23P35210 1082 aa5.57□□□□□ -1.52
SHH3YMR118C ATH1P48016 1211 aa5.54□□□□□ -1.52
SHH3YMR118C SPA2P23201 1466 aaKnown RBP5.53□□□□□ -1.52
SHH3YMR118C MAK11P20484 414 aaKnown RBP5.53□□□□□ -1.52
SHH3YMR118C RAM2P29703 316 aa5.51□□□□□ -1.53
SHH3YMR118C GUT1P32190 709 aa5.51□□□□□ -1.53
SHH3YMR118C PTC3P34221 468 aaKnown RBP5.51□□□□□ -1.53
SHH3YMR118C MID1P41821 548 aa5.51□□□□□ -1.53
SHH3YMR118C EDS1P38073 919 aa5.5□□□□□ -1.53
SHH3YMR118C PEX29Q03370 554 aa5.47□□□□□ -1.53
SHH3YMR118C YML082WQ04533 649 aaKnown RBP5.47□□□□□ -1.53
SHH3YMR118C COQ8P27697 501 aa5.46□□□□□ -1.54
SHH3YMR118C HAP5Q02516 242 aa5.46□□□□□ -1.54
SHH3YMR118C SSN2P38931 1420 aa5.46□□□□□ -1.54
SHH3YMR118C BNI4P53858 892 aa5.45□□□□□ -1.54
SHH3YMR118C PTC2P39966 464 aaKnown RBP5.43□□□□□ -1.54
SHH3YMR118C RAS1P01119 309 aa5.42□□□□□ -1.54
SHH3YMR118C NST1P53935 1240 aa5.42□□□□□ -1.54
SHH3YMR118C SOL3P38858 249 aa5.41□□□□□ -1.54
SHH3YMR118C INO80P53115 1489 aa5.4□□□□□ -1.54
SHH3YMR118C MPH3P0CE00 602 aa5.4□□□□□ -1.54
SHH3YMR118C AI4P03878 556 aa5.39□□□□□ -1.55
SHH3YMR118C TRK1P12685 1235 aa5.37□□□□□ -1.55
SHH3YMR118C ILV3P39522 585 aaKnown RBP5.35□□□□□ -1.55
SHH3YMR118C YGR273CP53329 174 aa5.34□□□□□ -1.55
SHH3YMR118C NOP53Q12080 455 aaKnown RBP5.34□□□□□ -1.55
SHH3YMR118C YPL062WQ02781 134 aa5.33□□□□□ -1.56
SHH3YMR118C MPC54Q08550 464 aa5.33□□□□□ -1.56
SHH3YMR118C NMA111P53920 997 aa5.31□□□□□ -1.56
SHH3YMR118C AMS1P22855 1083 aa5.29□□□□□ -1.56
SHH3YMR118C SLI15P38283 698 aa5.28□□□□□ -1.56
SHH3YMR118C DPL1Q05567 589 aa5.26□□□□□ -1.57
SHH3YMR118C GYP1Q08484 637 aa5.25□□□□□ -1.57
SHH3YMR118C YPR015CQ12531 247 aa5.25□□□□□ -1.57
SHH3YMR118C TCB3Q03640 1545 aaKnown RBP5.23□□□□□ -1.57
SHH3YMR118C KEX1P09620 729 aa5.22□□□□□ -1.57
SHH3YMR118C RAM1P22007 431 aa5.21□□□□□ -1.58
SHH3YMR118C SKI3P17883 1432 aaKnown RBP5.21□□□□□ -1.58
SHH3YMR118C ISU2Q12056 156 aa5.2□□□□□ -1.58
SHH3YMR118C SET1P38827 1080 aaKnown RBP5.19□□□□□ -1.58
SHH3YMR118C SAS4Q04003 481 aa5.19□□□□□ -1.58
SHH3YMR118C CDC73Q06697 393 aa5.18□□□□□ -1.58
SHH3YMR118C YLR326WQ06170 240 aaKnown RBP5.16□□□□□ -1.58
SHH3YMR118C YEL077CQ3E7X8 1277 aa5.16□□□□□ -1.58
SHH3YMR118C SDH2P21801 266 aa5.15□□□□□ -1.59
SHH3YMR118C GBP2P25555 427 aaKnown RBP RIP-Chip data5.15□□□□□ -1.59not detected
SHH3YMR118C UBP14P38237 781 aaKnown RBP5.15□□□□□ -1.59
SHH3YMR118C VHR2P40041 505 aa5.15□□□□□ -1.59
SHH3YMR118C GAR1P28007 205 aaKnown RBP5.14□□□□□ -1.59
SHH3YMR118C PDR1P12383 1068 aa5.13□□□□□ -1.59
SHH3YMR118C RAD54P32863 898 aa5.12□□□□□ -1.59
SHH3YMR118C PCS60P38137 543 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
SHH3YMR118C GCR2Q01722 534 aa5.12□□□□□ -1.59
SHH3YMR118C RPP1BP10622 106 aaKnown RBP5.11□□□□□ -1.59
SHH3YMR118C MRF1P30775 413 aaPredicted RBP5.11□□□□□ -1.59
SHH3YMR118C BRE2P43132 505 aa5.1□□□□□ -1.59
SHH3YMR118C HSL1P34244 1518 aa5.08□□□□□ -1.6
SHH3YMR118C SPT6P23615 1451 aaKnown RBP5.07□□□□□ -1.6
SHH3YMR118C TY1B-DR4Q07793 1604 aa5.06□□□□□ -1.6
SHH3YMR118C KIC1P38692 1080 aa5.06□□□□□ -1.6
SHH3YMR118C PEX21P50091 288 aa5.05□□□□□ -1.6
SHH3YMR118C YRR1Q12172 810 aa5.04□□□□□ -1.6
SHH3YMR118C CHD1P32657 1468 aa5.04□□□□□ -1.6
SHH3YMR118C MMS22Q06164 1454 aa5.04□□□□□ -1.6
SHH3YMR118C IFH1P39520 1085 aa5.03□□□□□ -1.6
SHH3YMR118C YDR090CQ03193 310 aa5.03□□□□□ -1.6
SHH3YMR118C BUD20Q08004 166 aaPredicted RBP5.02□□□□□ -1.61
SHH3YMR118C XRN1P22147 1528 aaKnown RBP5.02□□□□□ -1.61
SHH3YMR118C ERG12P07277 443 aa5.01□□□□□ -1.61
SHH3YMR118C PRT1P06103 763 aaKnown RBP5□□□□□ -1.61
SHH3YMR118C AIR1P40507 360 aaKnown RBP5□□□□□ -1.61
SHH3YMR118C TUM1Q08686 304 aaKnown RBP5□□□□□ -1.61
SHH3YMR118C HIR3P47171 1648 aa4.99□□□□□ -1.61
SHH3YMR118C REF2P42073 533 aaPredicted RBP4.99□□□□□ -1.61
SHH3YMR118C CSC1Q06538 782 aa4.99□□□□□ -1.61
SHH3YMR118C MET22P32179 357 aa4.98□□□□□ -1.61
SHH3YMR118C STR2P47164 639 aa4.98□□□□□ -1.61
SHH3YMR118C TFB4Q12004 338 aa4.98□□□□□ -1.61
SHH3YMR118C GAP1P19145 602 aaPredicted RBP4.97□□□□□ -1.61
SHH3YMR118C NUD1P32336 851 aa4.97□□□□□ -1.61
SHH3YMR118C ISM1P48526 1002 aa4.97□□□□□ -1.61
SHH3YMR118C NPL4P33755 580 aa4.96□□□□□ -1.62
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms