RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	NTE1	Q04958	1679 aa		24.15	■■□□□ 1.46
CCC1	YLR220W	RPO21	P04050	1733 aa	Known RBP	24.1	■■□□□ 1.45
CCC1	YLR220W	SAS10	Q12136	610 aa	Predicted RBP	24.07	■■□□□ 1.44
CCC1	YLR220W	YRF1-1	P0CX20	1796 aa		24.03	■■□□□ 1.44
CCC1	YLR220W	YRF1-5	P0CX21	1796 aa		24.03	■■□□□ 1.44
CCC1	YLR220W	YRF1-8	P0CX22	1796 aa		24.03	■■□□□ 1.44
CCC1	YLR220W	TAF7	Q05021	590 aa		24.01	■■□□□ 1.43
CCC1	YLR220W	LTE1	P07866	1435 aa		23.97	■■□□□ 1.43
CCC1	YLR220W	MLP2	P40457	1679 aa		23.96	■■□□□ 1.43
CCC1	YLR220W	ULS1	Q08562	1619 aa		23.95	■■□□□ 1.43
CCC1	YLR220W	PDR15	Q04182	1529 aa	Known RBP	23.92	■■□□□ 1.42
CCC1	YLR220W	VPS15	P22219	1454 aa		23.85	■■□□□ 1.41
CCC1	YLR220W	GEA2	P39993	1459 aa	Known RBP	23.85	■■□□□ 1.41
CCC1	YLR220W	RTT106	P40161	455 aa		23.79	■■□□□ 1.4
CCC1	YLR220W	MET10	P39692	1035 aa		23.78	■■□□□ 1.4
CCC1	YLR220W	PDR12	Q02785	1511 aa		23.74	■■□□□ 1.39
CCC1	YLR220W	IRC20	Q06554	1556 aa		23.72	■■□□□ 1.39
CCC1	YLR220W	GEA1	P47102	1408 aa	Predicted RBP	23.67	■■□□□ 1.38
CCC1	YLR220W	SPO14	P36126	1683 aa		23.64	■■□□□ 1.38
CCC1	YLR220W	IFH1	P39520	1085 aa		23.62	■■□□□ 1.37
CCC1	YLR220W	BNI1	P41832	1953 aa		23.61	■■□□□ 1.37
CCC1	YLR220W	GDB1	Q06625	1536 aa		23.57	■■□□□ 1.36
CCC1	YLR220W	ITT1	Q04638	464 aa		23.52	■■□□□ 1.36
CCC1	YLR220W	TY3B-G	Q99315	1547 aa		23.51	■■□□□ 1.35
CCC1	YLR220W	DRS2	P39524	1355 aa		23.49	■■□□□ 1.35
CCC1	YLR220W	NUP157	P40064	1391 aa	Known RBP	23.48	■■□□□ 1.35
CCC1	YLR220W	CAT8	P39113	1433 aa		23.48	■■□□□ 1.35
CCC1	YLR220W	PDR10	P51533	1564 aa		23.46	■■□□□ 1.35
CCC1	YLR220W	NUP170	P38181	1502 aa		23.43	■■□□□ 1.34
CCC1	YLR220W	IQG1	Q12280	1495 aa		23.38	■■□□□ 1.33
CCC1	YLR220W	YBT1	P32386	1661 aa		23.38	■■□□□ 1.33
CCC1	YLR220W	BUD3	P25558	1636 aa		23.3	■■□□□ 1.32
CCC1	YLR220W	MMS1	Q06211	1407 aa		23.21	■■□□□ 1.31
CCC1	YLR220W	ARO1	P08566	1588 aa	Known RBP	23.2	■■□□□ 1.3
CCC1	YLR220W	TRM3	Q07527	1436 aa		23.18	■■□□□ 1.3
CCC1	YLR220W	IKI3	Q06706	1349 aa	Known RBP	23.17	■■□□□ 1.3
CCC1	YLR220W	DOP1	Q03921	1698 aa		23.13	■■□□□ 1.29
CCC1	YLR220W	YSP2	Q06681	1438 aa		23.12	■■□□□ 1.29
CCC1	YLR220W	CKB1	P43639	278 aa		23.06	■■□□□ 1.28
CCC1	YLR220W	SEC7	P11075	2009 aa	Known RBP	23.05	■■□□□ 1.28
CCC1	YLR220W	SRB8	P25648	1427 aa		23.02	■■□□□ 1.28
CCC1	YLR220W	DNF2	Q12675	1612 aa		22.92	■■□□□ 1.26
CCC1	YLR220W	CHC1	P22137	1653 aa	Known RBP	22.91	■■□□□ 1.26
CCC1	YLR220W	BNR1	P40450	1375 aa		22.89	■■□□□ 1.26
CCC1	YLR220W	SSM4	P40318	1319 aa		22.86	■■□□□ 1.25
CCC1	YLR220W	ABP1	P15891	592 aa	Known RBP	22.75	■■□□□ 1.23
CCC1	YLR220W	BUD21	Q08492	214 aa	Predicted RBP	22.72	■■□□□ 1.23
CCC1	YLR220W	YOR093C	Q12275	1648 aa		22.6	■■□□□ 1.21
CCC1	YLR220W	MIF2	P35201	549 aa		22.52	■■□□□ 1.2
CCC1	YLR220W	YAP3	P38749	330 aa		22.48	■■□□□ 1.19
CCC1	YLR220W	URN1	Q06525	465 aa	Known RBP	22.45	■■□□□ 1.18
CCC1	YLR220W	GCN2	P15442	1659 aa		22.42	■■□□□ 1.18
CCC1	YLR220W	NUP188	P52593	1655 aa	Known RBP	22.39	■■□□□ 1.18
CCC1	YLR220W	VMR1	P38735	1592 aa		22.34	■■□□□ 1.17
CCC1	YLR220W	DNF3	Q12674	1656 aa		22.33	■■□□□ 1.17
CCC1	YLR220W	IPL1	P38991	367 aa		22.31	■■□□□ 1.16
CCC1	YLR220W	PDR5	P33302	1511 aa	Known RBP	22.31	■■□□□ 1.16
CCC1	YLR220W	HAP1	P0CE41	1502 aa		22.25	■■□□□ 1.15
CCC1	YLR220W	IML1	P47170	1584 aa		22.21	■■□□□ 1.15
CCC1	YLR220W	TYS1	P36421	394 aa	Known RBP	22.18	■■□□□ 1.14
CCC1	YLR220W	PDR11	P40550	1411 aa		22.16	■■□□□ 1.14
CCC1	YLR220W	MAK10	Q02197	733 aa		22.1	■■□□□ 1.13
CCC1	YLR220W	RAV1	P47104	1357 aa		22.02	■■□□□ 1.12
CCC1	YLR220W	PAF1	P38351	445 aa		22.01	■■□□□ 1.11
CCC1	YLR220W	BFR2	Q06631	534 aa	Known RBP	21.94	■■□□□ 1.1
CCC1	YLR220W	RTC1	Q08281	1341 aa		21.9	■■□□□ 1.1
CCC1	YLR220W	NOP7	P53261	605 aa	Known RBP	21.89	■■□□□ 1.09
CCC1	YLR220W	YFR006W	P43590	535 aa		21.83	■■□□□ 1.09
CCC1	YLR220W	TY1B-NL2	Q99337	1749 aa	Known RBP	21.74	■■□□□ 1.07
CCC1	YLR220W	NUP192	P47054	1683 aa		21.73	■■□□□ 1.07
CCC1	YLR220W	USO1	P25386	1790 aa		21.71	■■□□□ 1.07
CCC1	YLR220W	BCK1	Q01389	1478 aa		21.69	■■□□□ 1.06
CCC1	YLR220W	ALD4	P46367	519 aa	Known RBP	21.64	■■□□□ 1.05
CCC1	YLR220W	YMR196W	Q04336	1088 aa		21.64	■■□□□ 1.05
CCC1	YLR220W	CFT1	Q06632	1357 aa	Known RBP	21.62	■■□□□ 1.05
CCC1	YLR220W	RAD9	P14737	1309 aa		21.58	■■□□□ 1.05
CCC1	YLR220W	KRE5	P22023	1365 aa		21.58	■■□□□ 1.04
CCC1	YLR220W	ESL2	P36168	1195 aa		21.57	■■□□□ 1.04
CCC1	YLR220W	MRX12	P47084	519 aa		21.55	■■□□□ 1.04
CCC1	YLR220W	CAB1	Q04430	367 aa		21.52	■■□□□ 1.04
CCC1	YLR220W	RIA1	P53893	1110 aa		21.5	■■□□□ 1.03
CCC1	YLR220W	TAF5	P38129	798 aa		21.48	■■□□□ 1.03
CCC1	YLR220W	THI12	P42883	340 aa		21.47	■■□□□ 1.03
CCC1	YLR220W	THI5	P43534	340 aa		21.47	■■□□□ 1.03
CCC1	YLR220W	THI11	P47183	340 aa		21.47	■■□□□ 1.03
CCC1	YLR220W	THI13	Q07748	340 aa		21.47	■■□□□ 1.03
CCC1	YLR220W	TY3B-I	Q7LHG5	1498 aa	Known RBP	21.45	■■□□□ 1.03
CCC1	YLR220W	YNR029C	P53729	429 aa	Known RBP	21.42	■■□□□ 1.02
CCC1	YLR220W	TAF8	Q03750	510 aa		21.36	■■□□□ 1.01
CCC1	YLR220W	NAP1	P25293	417 aa	Known RBP	21.33	■■□□□ 1.01
CCC1	YLR220W	KIP3	P53086	805 aa	Known RBP	21.28	■■□□□ 1
CCC1	YLR220W	SPE2	P21182	396 aa		21.25	■□□□□ 0.99
CCC1	YLR220W	YLR419W	Q06698	1435 aa	Known RBP	21.21	■□□□□ 0.99
CCC1	YLR220W	POL5	P39985	1022 aa	Known RBP	21.16	■□□□□ 0.98
CCC1	YLR220W	ORC1	P54784	914 aa	Predicted RBP	21.14	■□□□□ 0.97
CCC1	YLR220W	CPS1	P27614	576 aa		21.12	■□□□□ 0.97
CCC1	YLR220W	SCT1	P32784	759 aa		21.11	■□□□□ 0.97
CCC1	YLR220W	RCM1	P53972	490 aa		21.1	■□□□□ 0.97
CCC1	YLR220W	PPH3	P32345	308 aa		21.06	■□□□□ 0.96
CCC1	YLR220W	PSK1	P31374	1356 aa		21.06	■□□□□ 0.96

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms