RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W NTE1Q04958 1679 aa15.38■□□□□ 0.05
SHH4YLR164W PDR15Q04182 1529 aaKnown RBP15.36■□□□□ 0.05
SHH4YLR164W MET5P47169 1442 aa15.35■□□□□ 0.05
SHH4YLR164W MLP2P40457 1679 aa15.35■□□□□ 0.05
SHH4YLR164W NUP159P40477 1460 aa15.33■□□□□ 0.05
SHH4YLR164W RPO21P04050 1733 aaKnown RBP15.32■□□□□ 0.04
SHH4YLR164W YRF1-1P0CX20 1796 aa15.26■□□□□ 0.03
SHH4YLR164W YRF1-5P0CX21 1796 aa15.26■□□□□ 0.03
SHH4YLR164W YRF1-8P0CX22 1796 aa15.26■□□□□ 0.03
SHH4YLR164W TAF7Q05021 590 aa15.22■□□□□ 0.03
SHH4YLR164W IFH1P39520 1085 aa15.2■□□□□ 0.02
SHH4YLR164W GEA1P47102 1408 aaPredicted RBP15.18■□□□□ 0.02
SHH4YLR164W GEA2P39993 1459 aaKnown RBP15.16■□□□□ 0.02
SHH4YLR164W IRC20Q06554 1556 aa15.15■□□□□ 0.02
SHH4YLR164W TY3B-GQ99315 1547 aa15.14■□□□□ 0.01
SHH4YLR164W VPS15P22219 1454 aa15.12■□□□□ 0.01
SHH4YLR164W RTT106P40161 455 aa15.11■□□□□ 0.01
SHH4YLR164W SPO14P36126 1683 aa15.08■□□□□ 0
SHH4YLR164W PDR12Q02785 1511 aa15.06■□□□□ 0
SHH4YLR164W MET10P39692 1035 aa15.04■□□□□ -0
SHH4YLR164W LTE1P07866 1435 aa15.03■□□□□ -0
SHH4YLR164W GDB1Q06625 1536 aa15.01□□□□□ -0.01
SHH4YLR164W YBT1P32386 1661 aa15□□□□□ -0.01
SHH4YLR164W PDR10P51533 1564 aa14.97□□□□□ -0.01
SHH4YLR164W NUP157P40064 1391 aaKnown RBP14.97□□□□□ -0.01
SHH4YLR164W CAT8P39113 1433 aa14.92□□□□□ -0.02
SHH4YLR164W IKI3Q06706 1349 aaKnown RBP14.9□□□□□ -0.02
SHH4YLR164W NUP170P38181 1502 aa14.89□□□□□ -0.03
SHH4YLR164W BNI1P41832 1953 aa14.88□□□□□ -0.03
SHH4YLR164W ARO1P08566 1588 aaKnown RBP14.86□□□□□ -0.03
SHH4YLR164W IQG1Q12280 1495 aa14.83□□□□□ -0.03
SHH4YLR164W ITT1Q04638 464 aa14.83□□□□□ -0.04
SHH4YLR164W SSM4P40318 1319 aa14.83□□□□□ -0.04
SHH4YLR164W BUD3P25558 1636 aa14.81□□□□□ -0.04
SHH4YLR164W DRS2P39524 1355 aa14.79□□□□□ -0.04
SHH4YLR164W CKB1P43639 278 aa14.76□□□□□ -0.05
SHH4YLR164W YSP2Q06681 1438 aa14.75□□□□□ -0.05
SHH4YLR164W SRB8P25648 1427 aa14.69□□□□□ -0.06
SHH4YLR164W DOP1Q03921 1698 aa14.65□□□□□ -0.06
SHH4YLR164W MMS1Q06211 1407 aa14.63□□□□□ -0.07
SHH4YLR164W TRM3Q07527 1436 aa14.61□□□□□ -0.07
SHH4YLR164W BNR1P40450 1375 aa14.56□□□□□ -0.08
SHH4YLR164W CHC1P22137 1653 aaKnown RBP14.55□□□□□ -0.08
SHH4YLR164W SEC7P11075 2009 aaKnown RBP14.55□□□□□ -0.08
SHH4YLR164W BUD21Q08492 214 aaPredicted RBP14.49□□□□□ -0.09
SHH4YLR164W DNF2Q12675 1612 aa14.47□□□□□ -0.09
SHH4YLR164W GCN2P15442 1659 aa14.36□□□□□ -0.11
SHH4YLR164W VMR1P38735 1592 aa14.34□□□□□ -0.11
SHH4YLR164W YOR093CQ12275 1648 aa14.33□□□□□ -0.11
SHH4YLR164W NUP188P52593 1655 aaKnown RBP14.27□□□□□ -0.12
SHH4YLR164W PDR5P33302 1511 aaKnown RBP14.27□□□□□ -0.12
SHH4YLR164W PDR11P40550 1411 aa14.27□□□□□ -0.12
SHH4YLR164W ABP1P15891 592 aaKnown RBP14.25□□□□□ -0.13
SHH4YLR164W IML1P47170 1584 aa14.21□□□□□ -0.14
SHH4YLR164W TYS1P36421 394 aaKnown RBP14.19□□□□□ -0.14
SHH4YLR164W YAP3P38749 330 aa14.18□□□□□ -0.14
SHH4YLR164W IPL1P38991 367 aa14.15□□□□□ -0.14
SHH4YLR164W DNF3Q12674 1656 aa14.14□□□□□ -0.15
SHH4YLR164W URN1Q06525 465 aaKnown RBP14.08□□□□□ -0.16
SHH4YLR164W RAV1P47104 1357 aa14.07□□□□□ -0.16
SHH4YLR164W NOP7P53261 605 aaKnown RBP14.04□□□□□ -0.16
SHH4YLR164W BFR2Q06631 534 aaKnown RBP14.04□□□□□ -0.16
SHH4YLR164W PAF1P38351 445 aa14.03□□□□□ -0.16
SHH4YLR164W RTC1Q08281 1341 aa13.99□□□□□ -0.17
SHH4YLR164W NUP192P47054 1683 aa13.98□□□□□ -0.17
SHH4YLR164W HAP1P0CE41 1502 aa13.95□□□□□ -0.18
SHH4YLR164W MIF2P35201 549 aa13.94□□□□□ -0.18
SHH4YLR164W MAK10Q02197 733 aa13.94□□□□□ -0.18
SHH4YLR164W TAF5P38129 798 aa13.85□□□□□ -0.19
SHH4YLR164W RAD9P14737 1309 aa13.85□□□□□ -0.19
SHH4YLR164W BCK1Q01389 1478 aa13.81□□□□□ -0.2
SHH4YLR164W KRE5P22023 1365 aa13.81□□□□□ -0.2
SHH4YLR164W TY3B-IQ7LHG5 1498 aaKnown RBP13.8□□□□□ -0.2
SHH4YLR164W ALD4P46367 519 aaKnown RBP13.78□□□□□ -0.2
SHH4YLR164W ORC1P54784 914 aaPredicted RBP13.78□□□□□ -0.2
SHH4YLR164W CAB1Q04430 367 aa13.78□□□□□ -0.2
SHH4YLR164W USO1P25386 1790 aa13.77□□□□□ -0.21
SHH4YLR164W ESL2P36168 1195 aa13.75□□□□□ -0.21
SHH4YLR164W CFT1Q06632 1357 aaKnown RBP13.73□□□□□ -0.21
SHH4YLR164W POL5P39985 1022 aaKnown RBP13.71□□□□□ -0.21
SHH4YLR164W RIA1P53893 1110 aa13.71□□□□□ -0.21
SHH4YLR164W KIP3P53086 805 aaKnown RBP13.7□□□□□ -0.22
SHH4YLR164W TAF8Q03750 510 aa13.69□□□□□ -0.22
SHH4YLR164W YLR419WQ06698 1435 aaKnown RBP13.68□□□□□ -0.22
SHH4YLR164W MRX12P47084 519 aa13.68□□□□□ -0.22
SHH4YLR164W TY1B-NL2Q99337 1749 aaKnown RBP13.65□□□□□ -0.22
SHH4YLR164W SPE2P21182 396 aa13.63□□□□□ -0.23
SHH4YLR164W YNR029CP53729 429 aaKnown RBP13.61□□□□□ -0.23
SHH4YLR164W THI12P42883 340 aa13.6□□□□□ -0.23
SHH4YLR164W THI5P43534 340 aa13.6□□□□□ -0.23
SHH4YLR164W THI11P47183 340 aa13.6□□□□□ -0.23
SHH4YLR164W THI13Q07748 340 aa13.6□□□□□ -0.23
SHH4YLR164W YFR006WP43590 535 aa13.59□□□□□ -0.23
SHH4YLR164W YMR196WQ04336 1088 aa13.54□□□□□ -0.24
SHH4YLR164W RCM1P53972 490 aa13.53□□□□□ -0.24
SHH4YLR164W MHP1P43638 1398 aa13.53□□□□□ -0.24
SHH4YLR164W PPH3P32345 308 aa13.52□□□□□ -0.25
SHH4YLR164W NAP1P25293 417 aaKnown RBP13.49□□□□□ -0.25
SHH4YLR164W CHZ1P40019 153 aaPredicted RBP13.47□□□□□ -0.25
SHH4YLR164W YML133CQ03099 1374 aa13.46□□□□□ -0.25
Retrieved 100 of 5,963 RNA–protein pairs in 498.7 ms