RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C SNT2P53127 1403 aa16.04■□□□□ 0.16
SHM2YLR058C NUP159P40477 1460 aa16.04■□□□□ 0.16
SHM2YLR058C RPO21P04050 1733 aaKnown RBP16.02■□□□□ 0.16
SHM2YLR058C MLP2P40457 1679 aa16.02■□□□□ 0.15
SHM2YLR058C TAF7Q05021 590 aa15.99■□□□□ 0.15
SHM2YLR058C PDR15Q04182 1529 aaKnown RBP15.99■□□□□ 0.15
SHM2YLR058C ULS1Q08562 1619 aa15.99■□□□□ 0.15
SHM2YLR058C YRF1-1P0CX20 1796 aa15.95■□□□□ 0.14
SHM2YLR058C YRF1-5P0CX21 1796 aa15.95■□□□□ 0.14
SHM2YLR058C YRF1-8P0CX22 1796 aa15.95■□□□□ 0.14
SHM2YLR058C RTT106P40161 455 aa15.86■□□□□ 0.13
SHM2YLR058C GEA2P39993 1459 aaKnown RBP15.86■□□□□ 0.13
SHM2YLR058C VPS15P22219 1454 aa15.85■□□□□ 0.13
SHM2YLR058C IFH1P39520 1085 aa15.84■□□□□ 0.13
SHM2YLR058C LTE1P07866 1435 aa15.84■□□□□ 0.13
SHM2YLR058C GEA1P47102 1408 aaPredicted RBP15.8■□□□□ 0.12
SHM2YLR058C MET10P39692 1035 aa15.79■□□□□ 0.12
SHM2YLR058C IRC20Q06554 1556 aa15.78■□□□□ 0.12
SHM2YLR058C PDR12Q02785 1511 aa15.75■□□□□ 0.11
SHM2YLR058C SPO14P36126 1683 aa15.74■□□□□ 0.11
SHM2YLR058C TY3B-GQ99315 1547 aa15.69■□□□□ 0.1
SHM2YLR058C GDB1Q06625 1536 aa15.66■□□□□ 0.1
SHM2YLR058C NUP157P40064 1391 aaKnown RBP15.64■□□□□ 0.09
SHM2YLR058C CAT8P39113 1433 aa15.62■□□□□ 0.09
SHM2YLR058C YBT1P32386 1661 aa15.61■□□□□ 0.09
SHM2YLR058C PDR10P51533 1564 aa15.61■□□□□ 0.09
SHM2YLR058C BNI1P41832 1953 aa15.59■□□□□ 0.09
SHM2YLR058C DRS2P39524 1355 aa15.56■□□□□ 0.08
SHM2YLR058C NUP170P38181 1502 aa15.56■□□□□ 0.08
SHM2YLR058C ITT1Q04638 464 aa15.56■□□□□ 0.08
SHM2YLR058C IQG1Q12280 1495 aa15.53■□□□□ 0.08
SHM2YLR058C IKI3Q06706 1349 aaKnown RBP15.5■□□□□ 0.07
SHM2YLR058C ARO1P08566 1588 aaKnown RBP15.48■□□□□ 0.07
SHM2YLR058C BUD3P25558 1636 aa15.44■□□□□ 0.06
SHM2YLR058C CKB1P43639 278 aa15.42■□□□□ 0.06
SHM2YLR058C MMS1Q06211 1407 aa15.38■□□□□ 0.05
SHM2YLR058C YSP2Q06681 1438 aa15.37■□□□□ 0.05
SHM2YLR058C TRM3Q07527 1436 aa15.37■□□□□ 0.05
SHM2YLR058C DOP1Q03921 1698 aa15.36■□□□□ 0.05
SHM2YLR058C SRB8P25648 1427 aa15.35■□□□□ 0.05
SHM2YLR058C SSM4P40318 1319 aa15.33■□□□□ 0.05
SHM2YLR058C SEC7P11075 2009 aaKnown RBP15.3■□□□□ 0.04
SHM2YLR058C CHC1P22137 1653 aaKnown RBP15.24■□□□□ 0.03
SHM2YLR058C BNR1P40450 1375 aa15.24■□□□□ 0.03
SHM2YLR058C DNF2Q12675 1612 aa15.18■□□□□ 0.02
SHM2YLR058C BUD21Q08492 214 aaPredicted RBP15.17■□□□□ 0.02
SHM2YLR058C ABP1P15891 592 aaKnown RBP15.06■□□□□ 0
SHM2YLR058C YOR093CQ12275 1648 aa15□□□□□ -0.01
SHM2YLR058C GCN2P15442 1659 aa14.98□□□□□ -0.01
SHM2YLR058C NUP188P52593 1655 aaKnown RBP14.92□□□□□ -0.02
SHM2YLR058C VMR1P38735 1592 aa14.91□□□□□ -0.02
SHM2YLR058C YAP3P38749 330 aa14.91□□□□□ -0.02
SHM2YLR058C URN1Q06525 465 aaKnown RBP14.88□□□□□ -0.03
SHM2YLR058C PDR5P33302 1511 aaKnown RBP14.87□□□□□ -0.03
SHM2YLR058C DNF3Q12674 1656 aa14.82□□□□□ -0.04
SHM2YLR058C IML1P47170 1584 aa14.82□□□□□ -0.04
SHM2YLR058C IPL1P38991 367 aa14.82□□□□□ -0.04
SHM2YLR058C MIF2P35201 549 aa14.8□□□□□ -0.04
SHM2YLR058C PDR11P40550 1411 aa14.79□□□□□ -0.04
SHM2YLR058C TYS1P36421 394 aaKnown RBP14.78□□□□□ -0.04
SHM2YLR058C PAF1P38351 445 aa14.73□□□□□ -0.05
SHM2YLR058C NOP7P53261 605 aaKnown RBP14.69□□□□□ -0.06
SHM2YLR058C RAV1P47104 1357 aa14.69□□□□□ -0.06
SHM2YLR058C HAP1P0CE41 1502 aa14.68□□□□□ -0.06
SHM2YLR058C BFR2Q06631 534 aaKnown RBP14.66□□□□□ -0.06
SHM2YLR058C MAK10Q02197 733 aa14.65□□□□□ -0.06
SHM2YLR058C RTC1Q08281 1341 aa14.61□□□□□ -0.07
SHM2YLR058C NUP192P47054 1683 aa14.51□□□□□ -0.09
SHM2YLR058C USO1P25386 1790 aa14.45□□□□□ -0.1
SHM2YLR058C BCK1Q01389 1478 aa14.44□□□□□ -0.1
SHM2YLR058C RAD9P14737 1309 aa14.42□□□□□ -0.1
SHM2YLR058C TAF5P38129 798 aa14.41□□□□□ -0.1
SHM2YLR058C ALD4P46367 519 aaKnown RBP14.41□□□□□ -0.1
SHM2YLR058C KRE5P22023 1365 aa14.4□□□□□ -0.1
SHM2YLR058C ESL2P36168 1195 aa14.4□□□□□ -0.1
SHM2YLR058C TY1B-NL2Q99337 1749 aaKnown RBP14.39□□□□□ -0.11
SHM2YLR058C YFR006WP43590 535 aa14.38□□□□□ -0.11
SHM2YLR058C CAB1Q04430 367 aa14.38□□□□□ -0.11
SHM2YLR058C MRX12P47084 519 aa14.37□□□□□ -0.11
SHM2YLR058C CFT1Q06632 1357 aaKnown RBP14.36□□□□□ -0.11
SHM2YLR058C RIA1P53893 1110 aa14.35□□□□□ -0.11
SHM2YLR058C TY3B-IQ7LHG5 1498 aaKnown RBP14.33□□□□□ -0.12
SHM2YLR058C YMR196WQ04336 1088 aa14.31□□□□□ -0.12
SHM2YLR058C TAF8Q03750 510 aa14.29□□□□□ -0.12
SHM2YLR058C KIP3P53086 805 aaKnown RBP14.27□□□□□ -0.12
SHM2YLR058C ORC1P54784 914 aaPredicted RBP14.27□□□□□ -0.12
SHM2YLR058C POL5P39985 1022 aaKnown RBP14.26□□□□□ -0.13
SHM2YLR058C THI12P42883 340 aa14.26□□□□□ -0.13
SHM2YLR058C THI5P43534 340 aa14.26□□□□□ -0.13
SHM2YLR058C THI11P47183 340 aa14.26□□□□□ -0.13
SHM2YLR058C THI13Q07748 340 aa14.26□□□□□ -0.13
SHM2YLR058C YNR029CP53729 429 aaKnown RBP14.24□□□□□ -0.13
SHM2YLR058C NAP1P25293 417 aaKnown RBP14.24□□□□□ -0.13
SHM2YLR058C YLR419WQ06698 1435 aaKnown RBP14.22□□□□□ -0.13
SHM2YLR058C SPE2P21182 396 aa14.21□□□□□ -0.13
SHM2YLR058C RCM1P53972 490 aa14.11□□□□□ -0.15
SHM2YLR058C CHZ1P40019 153 aaPredicted RBP14.07□□□□□ -0.16
SHM2YLR058C CPS1P27614 576 aa14.07□□□□□ -0.16
SHM2YLR058C PPH3P32345 308 aa14.07□□□□□ -0.16
SHM2YLR058C MHP1P43638 1398 aa14.06□□□□□ -0.16
Retrieved 100 of 5,963 RNA–protein pairs in 44.7 ms