RNA–Protein interactions for RNA: YLR003C

CMS1, Transcript of Putative subunit of the 90S preribosome processome complex, yeastyeast

Gene CMS1, Length 876 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CMS1YLR003C CHL1P22516 861 aaPredicted RBP10.09□□□□□ -0.79
CMS1YLR003C DCW1P36091 449 aa10.06□□□□□ -0.8
CMS1YLR003C PTC4P38089 393 aa10.06□□□□□ -0.8
CMS1YLR003C PRE3P38624 215 aa10.04□□□□□ -0.8
CMS1YLR003C YEL023CP39992 682 aa10.04□□□□□ -0.8
CMS1YLR003C GRE2Q12068 342 aaKnown RBP9.9□□□□□ -0.82
CMS1YLR003C PML39Q03760 334 aa9.85□□□□□ -0.83
CMS1YLR003C VRP1P37370 817 aa9.84□□□□□ -0.83
CMS1YLR003C XDJ1P39102 459 aa9.84□□□□□ -0.83
CMS1YLR003C ELP4Q02884 456 aaKnown RBP9.82□□□□□ -0.84
CMS1YLR003C YDR344CQ05510 147 aa9.8□□□□□ -0.84
CMS1YLR003C MIF2P35201 549 aa9.79□□□□□ -0.84
CMS1YLR003C ATH1P48016 1211 aa9.79□□□□□ -0.84
CMS1YLR003C GUT1P32190 709 aa9.77□□□□□ -0.85
CMS1YLR003C MAK11P20484 414 aaKnown RBP9.76□□□□□ -0.85
CMS1YLR003C PTC3P34221 468 aaKnown RBP9.74□□□□□ -0.85
CMS1YLR003C EDS1P38073 919 aa9.72□□□□□ -0.85
CMS1YLR003C ARH1P48360 493 aa9.72□□□□□ -0.85
CMS1YLR003C RAM2P29703 316 aa9.69□□□□□ -0.86
CMS1YLR003C MID1P41821 548 aa9.68□□□□□ -0.86
CMS1YLR003C NST1P53935 1240 aa9.68□□□□□ -0.86
CMS1YLR003C DPS1P04802 557 aaKnown RBP9.66□□□□□ -0.86
CMS1YLR003C SPT23P35210 1082 aa9.63□□□□□ -0.87
CMS1YLR003C PEX29Q03370 554 aa9.63□□□□□ -0.87
CMS1YLR003C COQ8P27697 501 aa9.62□□□□□ -0.87
CMS1YLR003C SOL3P38858 249 aa9.61□□□□□ -0.87
CMS1YLR003C AI4P03878 556 aa9.6□□□□□ -0.87
CMS1YLR003C MPH3P0CE00 602 aa9.6□□□□□ -0.87
CMS1YLR003C HAP5Q02516 242 aa9.56□□□□□ -0.88
CMS1YLR003C BNI4P53858 892 aa9.51□□□□□ -0.89
CMS1YLR003C ILV3P39522 585 aaKnown RBP9.5□□□□□ -0.89
CMS1YLR003C NOP53Q12080 455 aaKnown RBP9.48□□□□□ -0.89
CMS1YLR003C YML082WQ04533 649 aaKnown RBP9.47□□□□□ -0.89
CMS1YLR003C PTC2P39966 464 aaKnown RBP9.46□□□□□ -0.9
CMS1YLR003C YGR273CP53329 174 aa9.45□□□□□ -0.9
CMS1YLR003C MPC54Q08550 464 aa9.45□□□□□ -0.9
CMS1YLR003C SRC1Q03707 834 aa9.4□□□□□ -0.9
CMS1YLR003C NMA111P53920 997 aa9.38□□□□□ -0.91
CMS1YLR003C SLI15P38283 698 aa9.35□□□□□ -0.91
CMS1YLR003C DPL1Q05567 589 aa9.34□□□□□ -0.91
CMS1YLR003C ISU2Q12056 156 aa9.24□□□□□ -0.93
CMS1YLR003C YPR015CQ12531 247 aa9.24□□□□□ -0.93
CMS1YLR003C RAS1P01119 309 aa9.23□□□□□ -0.93
CMS1YLR003C RGA2Q06407 1009 aa9.23□□□□□ -0.93
CMS1YLR003C KEX1P09620 729 aa9.21□□□□□ -0.94
CMS1YLR003C RAM1P22007 431 aa9.2□□□□□ -0.94
CMS1YLR003C RGA1P39083 1007 aa9.18□□□□□ -0.94
CMS1YLR003C GYP1Q08484 637 aa9.17□□□□□ -0.94
CMS1YLR003C CDC73Q06697 393 aa9.15□□□□□ -0.94
CMS1YLR003C AMS1P22855 1083 aa9.12□□□□□ -0.95
CMS1YLR003C TRK1P12685 1235 aa9.09□□□□□ -0.95
CMS1YLR003C SAS4Q04003 481 aa9.09□□□□□ -0.95
CMS1YLR003C YLR326WQ06170 240 aaKnown RBP9.08□□□□□ -0.96
CMS1YLR003C PDR1P12383 1068 aa9.07□□□□□ -0.96
CMS1YLR003C UBP14P38237 781 aaKnown RBP9.07□□□□□ -0.96
CMS1YLR003C SET1P38827 1080 aaKnown RBP9.05□□□□□ -0.96
CMS1YLR003C RPP1BP10622 106 aaKnown RBP9.04□□□□□ -0.96
CMS1YLR003C VHR2P40041 505 aa9.04□□□□□ -0.96
CMS1YLR003C PCS60P38137 543 aaKnown RBP RIP-Chip data9.02□□□□□ -0.97not detected
CMS1YLR003C SDH2P21801 266 aa9.01□□□□□ -0.97
CMS1YLR003C RAD54P32863 898 aa9.01□□□□□ -0.97
CMS1YLR003C YEL077CQ3E7X8 1277 aa9□□□□□ -0.97
CMS1YLR003C MRF1P30775 413 aaPredicted RBP8.96□□□□□ -0.98
CMS1YLR003C BUD20Q08004 166 aaPredicted RBP8.9□□□□□ -0.98
CMS1YLR003C PRT1P06103 763 aaKnown RBP8.89□□□□□ -0.99
CMS1YLR003C PEX21P50091 288 aa8.88□□□□□ -0.99
CMS1YLR003C KIC1P38692 1080 aa8.87□□□□□ -0.99
CMS1YLR003C YRR1Q12172 810 aa8.87□□□□□ -0.99
CMS1YLR003C YDR090CQ03193 310 aa8.86□□□□□ -0.99
CMS1YLR003C STR2P47164 639 aa8.83□□□□□ -1
CMS1YLR003C ERG12P07277 443 aa8.82□□□□□ -1
CMS1YLR003C IFH1P39520 1085 aa8.82□□□□□ -1
CMS1YLR003C TFB4Q12004 338 aa8.82□□□□□ -1
CMS1YLR003C GAP1P19145 602 aaPredicted RBP8.81□□□□□ -1
CMS1YLR003C CSC1Q06538 782 aa8.81□□□□□ -1
CMS1YLR003C ISM1P48526 1002 aa8.8□□□□□ -1
CMS1YLR003C YPL062WQ02781 134 aa8.79□□□□□ -1
CMS1YLR003C NUD1P32336 851 aa8.78□□□□□ -1
CMS1YLR003C TUM1Q08686 304 aaKnown RBP8.77□□□□□ -1.01
CMS1YLR003C NPL4P33755 580 aa8.75□□□□□ -1.01
CMS1YLR003C BRE2P43132 505 aa8.75□□□□□ -1.01
CMS1YLR003C GCR2Q01722 534 aa8.75□□□□□ -1.01
CMS1YLR003C CST6P40535 587 aa8.73□□□□□ -1.01
CMS1YLR003C AIR1P40507 360 aaKnown RBP8.72□□□□□ -1.01
CMS1YLR003C REF2P42073 533 aaPredicted RBP8.72□□□□□ -1.01
CMS1YLR003C GCD11P32481 527 aaKnown RBP8.7□□□□□ -1.02
CMS1YLR003C SPT16P32558 1035 aaKnown RBP8.7□□□□□ -1.02
CMS1YLR003C CLA4P48562 842 aa8.69□□□□□ -1.02
CMS1YLR003C ORC6P38826 435 aa8.68□□□□□ -1.02
CMS1YLR003C LAM6Q08001 693 aa8.68□□□□□ -1.02
CMS1YLR003C TY1A-DR4O74302 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-HP0C2I4 478 aaKnown RBP8.66□□□□□ -1.02
CMS1YLR003C TY1A-AP0CX57 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-PR1P0CX58 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-ORP0CX59 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-PR2P0CX60 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-DR5P0CX65 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-ER2P0CX66 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-GR3P0CX67 440 aa8.66□□□□□ -1.02
CMS1YLR003C TY1A-LR1P0CX68 440 aa8.66□□□□□ -1.02
Retrieved 100 of 5,963 RNA–protein pairs in 11 ms