RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W PTC4P38089 393 aa8.14□□□□□ -1.11
SEC4YFL005W RCR1P38212 213 aa8.14□□□□□ -1.11
SEC4YFL005W DCW1P36091 449 aa8.12□□□□□ -1.11
SEC4YFL005W PRE3P38624 215 aa8.11□□□□□ -1.11
SEC4YFL005W YEL023CP39992 682 aa8.09□□□□□ -1.11
SEC4YFL005W XDJ1P39102 459 aa7.98□□□□□ -1.13
SEC4YFL005W GRE2Q12068 342 aaKnown RBP7.98□□□□□ -1.13
SEC4YFL005W VRP1P37370 817 aa7.96□□□□□ -1.14
SEC4YFL005W PML39Q03760 334 aa7.95□□□□□ -1.14
SEC4YFL005W ELP4Q02884 456 aaKnown RBP7.93□□□□□ -1.14
SEC4YFL005W GUT1P32190 709 aa7.9□□□□□ -1.14
SEC4YFL005W ATH1P48016 1211 aa7.89□□□□□ -1.15
SEC4YFL005W MIF2P35201 549 aa7.88□□□□□ -1.15
SEC4YFL005W YDR344CQ05510 147 aa7.88□□□□□ -1.15
SEC4YFL005W MAK11P20484 414 aaKnown RBP7.86□□□□□ -1.15
SEC4YFL005W ARH1P48360 493 aa7.86□□□□□ -1.15
SEC4YFL005W PTC3P34221 468 aaKnown RBP7.85□□□□□ -1.15
SEC4YFL005W EDS1P38073 919 aa7.81□□□□□ -1.16
SEC4YFL005W NST1P53935 1240 aa7.81□□□□□ -1.16
SEC4YFL005W DPS1P04802 557 aaKnown RBP7.8□□□□□ -1.16
SEC4YFL005W MID1P41821 548 aa7.8□□□□□ -1.16
SEC4YFL005W RAM2P29703 316 aa7.79□□□□□ -1.16
SEC4YFL005W SPT23P35210 1082 aa7.79□□□□□ -1.16
SEC4YFL005W MPH3P0CE00 602 aa7.76□□□□□ -1.17
SEC4YFL005W AI4P03878 556 aa7.75□□□□□ -1.17
SEC4YFL005W SOL3P38858 249 aa7.75□□□□□ -1.17
SEC4YFL005W PEX29Q03370 554 aa7.75□□□□□ -1.17
SEC4YFL005W COQ8P27697 501 aa7.74□□□□□ -1.17
SEC4YFL005W HAP5Q02516 242 aa7.72□□□□□ -1.17
SEC4YFL005W BNI4P53858 892 aa7.68□□□□□ -1.18
SEC4YFL005W YML082WQ04533 649 aaKnown RBP7.68□□□□□ -1.18
SEC4YFL005W NOP53Q12080 455 aaKnown RBP7.67□□□□□ -1.18
SEC4YFL005W PTC2P39966 464 aaKnown RBP7.65□□□□□ -1.18
SEC4YFL005W ILV3P39522 585 aaKnown RBP7.63□□□□□ -1.19
SEC4YFL005W YGR273CP53329 174 aa7.62□□□□□ -1.19
SEC4YFL005W MPC54Q08550 464 aa7.62□□□□□ -1.19
SEC4YFL005W NMA111P53920 997 aa7.59□□□□□ -1.19
SEC4YFL005W SRC1Q03707 834 aa7.58□□□□□ -1.2
SEC4YFL005W DPL1Q05567 589 aa7.55□□□□□ -1.2
SEC4YFL005W SLI15P38283 698 aa7.53□□□□□ -1.2
SEC4YFL005W RQC2Q12532 1038 aaKnown RBP7.53□□□□□ -1.2
SEC4YFL005W RGA2Q06407 1009 aa7.49□□□□□ -1.21
SEC4YFL005W ISU2Q12056 156 aa7.47□□□□□ -1.21
SEC4YFL005W RAS1P01119 309 aa7.46□□□□□ -1.22
SEC4YFL005W RGA1P39083 1007 aa7.45□□□□□ -1.22
SEC4YFL005W KEX1P09620 729 aa7.43□□□□□ -1.22
SEC4YFL005W YPR015CQ12531 247 aa7.43□□□□□ -1.22
SEC4YFL005W RAM1P22007 431 aa7.42□□□□□ -1.22
SEC4YFL005W GYP1Q08484 637 aa7.4□□□□□ -1.22
SEC4YFL005W AMS1P22855 1083 aa7.37□□□□□ -1.23
SEC4YFL005W SAS4Q04003 481 aa7.36□□□□□ -1.23
SEC4YFL005W CDC73Q06697 393 aa7.36□□□□□ -1.23
SEC4YFL005W TRK1P12685 1235 aa7.35□□□□□ -1.23
SEC4YFL005W UBP14P38237 781 aaKnown RBP7.33□□□□□ -1.24
SEC4YFL005W PDR1P12383 1068 aa7.31□□□□□ -1.24
SEC4YFL005W YLR326WQ06170 240 aaKnown RBP7.31□□□□□ -1.24
SEC4YFL005W RPP1BP10622 106 aaKnown RBP7.3□□□□□ -1.24
SEC4YFL005W SET1P38827 1080 aaKnown RBP7.29□□□□□ -1.24
SEC4YFL005W PCS60P38137 543 aaKnown RBP RIP-Chip data7.27□□□□□ -1.25not detected
SEC4YFL005W VHR2P40041 505 aa7.27□□□□□ -1.25
SEC4YFL005W YEL077CQ3E7X8 1277 aa7.27□□□□□ -1.25
SEC4YFL005W SDH2P21801 266 aa7.26□□□□□ -1.25
SEC4YFL005W MRF1P30775 413 aaPredicted RBP7.26□□□□□ -1.25
SEC4YFL005W RAD54P32863 898 aa7.26□□□□□ -1.25
SEC4YFL005W DMA1P38823 416 aa7.23□□□□□ -1.25
SEC4YFL005W BUD20Q08004 166 aaPredicted RBP7.19□□□□□ -1.26
SEC4YFL005W PRT1P06103 763 aaKnown RBP7.18□□□□□ -1.26
SEC4YFL005W PEX21P50091 288 aa7.16□□□□□ -1.26
SEC4YFL005W YRR1Q12172 810 aa7.16□□□□□ -1.26
SEC4YFL005W ERG12P07277 443 aa7.14□□□□□ -1.27
SEC4YFL005W KIC1P38692 1080 aa7.14□□□□□ -1.27
SEC4YFL005W YPL062WQ02781 134 aa7.13□□□□□ -1.27
SEC4YFL005W YDR090CQ03193 310 aa7.13□□□□□ -1.27
SEC4YFL005W CSC1Q06538 782 aa7.12□□□□□ -1.27
SEC4YFL005W TFB4Q12004 338 aa7.12□□□□□ -1.27
SEC4YFL005W IFH1P39520 1085 aa7.11□□□□□ -1.27
SEC4YFL005W GAP1P19145 602 aaPredicted RBP7.1□□□□□ -1.27
SEC4YFL005W STR2P47164 639 aa7.1□□□□□ -1.27
SEC4YFL005W ISM1P48526 1002 aa7.1□□□□□ -1.27
SEC4YFL005W GCR2Q01722 534 aa7.09□□□□□ -1.27
SEC4YFL005W TUM1Q08686 304 aaKnown RBP7.08□□□□□ -1.28
SEC4YFL005W NUD1P32336 851 aa7.07□□□□□ -1.28
SEC4YFL005W NPL4P33755 580 aa7.07□□□□□ -1.28
SEC4YFL005W BRE2P43132 505 aa7.07□□□□□ -1.28
SEC4YFL005W CST6P40535 587 aa7.03□□□□□ -1.28
SEC4YFL005W REF2P42073 533 aaPredicted RBP7.03□□□□□ -1.28
SEC4YFL005W GCD11P32481 527 aaKnown RBP7.02□□□□□ -1.29
SEC4YFL005W SPT16P32558 1035 aaKnown RBP7.02□□□□□ -1.29
SEC4YFL005W AIR1P40507 360 aaKnown RBP7.02□□□□□ -1.29
SEC4YFL005W GAR1P28007 205 aaKnown RBP7.01□□□□□ -1.29
SEC4YFL005W GBP2P25555 427 aaKnown RBP RIP-Chip data7□□□□□ -1.29not detected
SEC4YFL005W LAM6Q08001 693 aa7□□□□□ -1.29
SEC4YFL005W ORC6P38826 435 aa6.99□□□□□ -1.29
SEC4YFL005W CLA4P48562 842 aa6.99□□□□□ -1.29
SEC4YFL005W SEC2P17065 759 aa6.98□□□□□ -1.29
SEC4YFL005W TY1A-DR4O74302 440 aa6.97□□□□□ -1.29
SEC4YFL005W CDC4P07834 779 aa6.97□□□□□ -1.29
SEC4YFL005W TY1A-HP0C2I4 478 aaKnown RBP6.97□□□□□ -1.29
SEC4YFL005W TY1A-AP0CX57 440 aa6.97□□□□□ -1.29
SEC4YFL005W TY1A-PR1P0CX58 440 aa6.97□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 95.7 ms