RNA–Protein interactions for RNA: YDR328C

SKP1, Transcript of Evolutionarily conserved kinetochore protein, yeast

Gene SKP1, Length 585 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKP1	YDR328C	STH1	P32597	1359 aa		11.22	□□□□□ -0.61
SKP1	YDR328C	SNT2	P53127	1403 aa		11.21	□□□□□ -0.61
SKP1	YDR328C	SAS10	Q12136	610 aa	Predicted RBP	11.21	□□□□□ -0.61
SKP1	YDR328C	ULS1	Q08562	1619 aa		11.2	□□□□□ -0.62
SKP1	YDR328C	PDR15	Q04182	1529 aa	Known RBP	11.17	□□□□□ -0.62
SKP1	YDR328C	YRF1-1	P0CX20	1796 aa		11.16	□□□□□ -0.62
SKP1	YDR328C	YRF1-5	P0CX21	1796 aa		11.16	□□□□□ -0.62
SKP1	YDR328C	YRF1-8	P0CX22	1796 aa		11.16	□□□□□ -0.62
SKP1	YDR328C	NUP159	P40477	1460 aa		11.16	□□□□□ -0.62
SKP1	YDR328C	TAF7	Q05021	590 aa		11.15	□□□□□ -0.62
SKP1	YDR328C	GEA2	P39993	1459 aa	Known RBP	11.07	□□□□□ -0.64
SKP1	YDR328C	IRC20	Q06554	1556 aa		11.05	□□□□□ -0.64
SKP1	YDR328C	GEA1	P47102	1408 aa	Predicted RBP	11.03	□□□□□ -0.64
SKP1	YDR328C	VPS15	P22219	1454 aa		11.01	□□□□□ -0.65
SKP1	YDR328C	PDR12	Q02785	1511 aa		11	□□□□□ -0.65
SKP1	YDR328C	RTT106	P40161	455 aa		11	□□□□□ -0.65
SKP1	YDR328C	SPO14	P36126	1683 aa		10.99	□□□□□ -0.65
SKP1	YDR328C	LTE1	P07866	1435 aa		10.99	□□□□□ -0.65
SKP1	YDR328C	TY3B-G	Q99315	1547 aa		10.99	□□□□□ -0.65
SKP1	YDR328C	IFH1	P39520	1085 aa		10.98	□□□□□ -0.65
SKP1	YDR328C	MET10	P39692	1035 aa		10.97	□□□□□ -0.65
SKP1	YDR328C	YBT1	P32386	1661 aa		10.95	□□□□□ -0.66
SKP1	YDR328C	GDB1	Q06625	1536 aa		10.94	□□□□□ -0.66
SKP1	YDR328C	CAT8	P39113	1433 aa		10.91	□□□□□ -0.66
SKP1	YDR328C	PDR10	P51533	1564 aa		10.9	□□□□□ -0.67
SKP1	YDR328C	BNI1	P41832	1953 aa		10.88	□□□□□ -0.67
SKP1	YDR328C	NUP170	P38181	1502 aa		10.87	□□□□□ -0.67
SKP1	YDR328C	NUP157	P40064	1391 aa	Known RBP	10.87	□□□□□ -0.67
SKP1	YDR328C	IKI3	Q06706	1349 aa	Known RBP	10.84	□□□□□ -0.67
SKP1	YDR328C	ARO1	P08566	1588 aa	Known RBP	10.81	□□□□□ -0.68
SKP1	YDR328C	IQG1	Q12280	1495 aa		10.81	□□□□□ -0.68
SKP1	YDR328C	BUD3	P25558	1636 aa		10.79	□□□□□ -0.68
SKP1	YDR328C	DRS2	P39524	1355 aa		10.78	□□□□□ -0.68
SKP1	YDR328C	ITT1	Q04638	464 aa		10.77	□□□□□ -0.69
SKP1	YDR328C	DOP1	Q03921	1698 aa		10.74	□□□□□ -0.69
SKP1	YDR328C	SEC7	P11075	2009 aa	Known RBP	10.74	□□□□□ -0.69
SKP1	YDR328C	YSP2	Q06681	1438 aa		10.73	□□□□□ -0.69
SKP1	YDR328C	SRB8	P25648	1427 aa		10.71	□□□□□ -0.69
SKP1	YDR328C	TRM3	Q07527	1436 aa		10.7	□□□□□ -0.7
SKP1	YDR328C	SSM4	P40318	1319 aa		10.7	□□□□□ -0.7
SKP1	YDR328C	CKB1	P43639	278 aa		10.69	□□□□□ -0.7
SKP1	YDR328C	CHC1	P22137	1653 aa	Known RBP	10.66	□□□□□ -0.7
SKP1	YDR328C	MMS1	Q06211	1407 aa		10.64	□□□□□ -0.71
SKP1	YDR328C	BNR1	P40450	1375 aa		10.6	□□□□□ -0.71
SKP1	YDR328C	DNF2	Q12675	1612 aa		10.58	□□□□□ -0.72
SKP1	YDR328C	BUD21	Q08492	214 aa	Predicted RBP	10.53	□□□□□ -0.72
SKP1	YDR328C	GCN2	P15442	1659 aa		10.53	□□□□□ -0.72
SKP1	YDR328C	YOR093C	Q12275	1648 aa		10.46	□□□□□ -0.74
SKP1	YDR328C	NUP188	P52593	1655 aa	Known RBP	10.44	□□□□□ -0.74
SKP1	YDR328C	VMR1	P38735	1592 aa		10.42	□□□□□ -0.74
SKP1	YDR328C	PDR5	P33302	1511 aa	Known RBP	10.41	□□□□□ -0.74
SKP1	YDR328C	ABP1	P15891	592 aa	Known RBP	10.36	□□□□□ -0.75
SKP1	YDR328C	YAP3	P38749	330 aa		10.35	□□□□□ -0.75
SKP1	YDR328C	DNF3	Q12674	1656 aa		10.34	□□□□□ -0.75
SKP1	YDR328C	URN1	Q06525	465 aa	Known RBP	10.34	□□□□□ -0.75
SKP1	YDR328C	IML1	P47170	1584 aa		10.34	□□□□□ -0.75
SKP1	YDR328C	PDR11	P40550	1411 aa		10.32	□□□□□ -0.76
SKP1	YDR328C	IPL1	P38991	367 aa		10.31	□□□□□ -0.76
SKP1	YDR328C	HAP1	P0CE41	1502 aa		10.3	□□□□□ -0.76
SKP1	YDR328C	TYS1	P36421	394 aa	Known RBP	10.26	□□□□□ -0.77
SKP1	YDR328C	RAV1	P47104	1357 aa		10.25	□□□□□ -0.77
SKP1	YDR328C	PAF1	P38351	445 aa		10.24	□□□□□ -0.77
SKP1	YDR328C	BFR2	Q06631	534 aa	Known RBP	10.22	□□□□□ -0.77
SKP1	YDR328C	NOP7	P53261	605 aa	Known RBP	10.21	□□□□□ -0.77
SKP1	YDR328C	RTC1	Q08281	1341 aa		10.2	□□□□□ -0.78
SKP1	YDR328C	MIF2	P35201	549 aa		10.18	□□□□□ -0.78
SKP1	YDR328C	NUP192	P47054	1683 aa		10.18	□□□□□ -0.78
SKP1	YDR328C	MAK10	Q02197	733 aa		10.15	□□□□□ -0.78
SKP1	YDR328C	USO1	P25386	1790 aa		10.11	□□□□□ -0.79
SKP1	YDR328C	BCK1	Q01389	1478 aa		10.08	□□□□□ -0.8
SKP1	YDR328C	TY1B-NL2	Q99337	1749 aa	Known RBP	10.07	□□□□□ -0.8
SKP1	YDR328C	TY3B-I	Q7LHG5	1498 aa	Known RBP	10.05	□□□□□ -0.8
SKP1	YDR328C	ESL2	P36168	1195 aa		10.04	□□□□□ -0.8
SKP1	YDR328C	ALD4	P46367	519 aa	Known RBP	10.04	□□□□□ -0.8
SKP1	YDR328C	RAD9	P14737	1309 aa		10.02	□□□□□ -0.81
SKP1	YDR328C	TAF5	P38129	798 aa		10.01	□□□□□ -0.81
SKP1	YDR328C	CFT1	Q06632	1357 aa	Known RBP	10.01	□□□□□ -0.81
SKP1	YDR328C	KRE5	P22023	1365 aa		10	□□□□□ -0.81
SKP1	YDR328C	CAB1	Q04430	367 aa		9.98	□□□□□ -0.81
SKP1	YDR328C	POL5	P39985	1022 aa	Known RBP	9.96	□□□□□ -0.82
SKP1	YDR328C	MRX12	P47084	519 aa		9.96	□□□□□ -0.82
SKP1	YDR328C	RIA1	P53893	1110 aa		9.94	□□□□□ -0.82
SKP1	YDR328C	YLR419W	Q06698	1435 aa	Known RBP	9.93	□□□□□ -0.82
SKP1	YDR328C	YMR196W	Q04336	1088 aa		9.93	□□□□□ -0.82
SKP1	YDR328C	KIP3	P53086	805 aa	Known RBP	9.92	□□□□□ -0.82
SKP1	YDR328C	TAF8	Q03750	510 aa		9.92	□□□□□ -0.82
SKP1	YDR328C	SPE2	P21182	396 aa		9.9	□□□□□ -0.82
SKP1	YDR328C	ORC1	P54784	914 aa	Predicted RBP	9.9	□□□□□ -0.82
SKP1	YDR328C	YFR006W	P43590	535 aa		9.89	□□□□□ -0.83
SKP1	YDR328C	YNR029C	P53729	429 aa	Known RBP	9.89	□□□□□ -0.83
SKP1	YDR328C	NAP1	P25293	417 aa	Known RBP	9.88	□□□□□ -0.83
SKP1	YDR328C	THI12	P42883	340 aa		9.87	□□□□□ -0.83
SKP1	YDR328C	THI5	P43534	340 aa		9.87	□□□□□ -0.83
SKP1	YDR328C	THI11	P47183	340 aa		9.87	□□□□□ -0.83
SKP1	YDR328C	THI13	Q07748	340 aa		9.87	□□□□□ -0.83
SKP1	YDR328C	MHP1	P43638	1398 aa		9.84	□□□□□ -0.83
SKP1	YDR328C	MLP1	Q02455	1875 aa	Known RBP	9.83	□□□□□ -0.84
SKP1	YDR328C	SCT1	P32784	759 aa		9.82	□□□□□ -0.84
SKP1	YDR328C	CHZ1	P40019	153 aa	Predicted RBP	9.79	□□□□□ -0.84
SKP1	YDR328C	RCM1	P53972	490 aa		9.79	□□□□□ -0.84

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms