RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W PTC4P38089 393 aa5.45□□□□□ -1.54
PRP42YDR235W DCW1P36091 449 aa5.42□□□□□ -1.54
PRP42YDR235W YEL023CP39992 682 aa5.42□□□□□ -1.54
PRP42YDR235W CST9Q06032 482 aa5.41□□□□□ -1.54
PRP42YDR235W SSP1P38871 571 aa5.39□□□□□ -1.55
PRP42YDR235W DPS1P04802 557 aaKnown RBP5.37□□□□□ -1.55
PRP42YDR235W ELP4Q02884 456 aaKnown RBP5.37□□□□□ -1.55
PRP42YDR235W TFA1P36100 482 aa5.36□□□□□ -1.55
PRP42YDR235W MGA2P40578 1113 aa5.35□□□□□ -1.55
PRP42YDR235W YDR344CQ05510 147 aa5.35□□□□□ -1.55
PRP42YDR235W RCR1P38212 213 aa5.34□□□□□ -1.55
PRP42YDR235W PML39Q03760 334 aa5.34□□□□□ -1.56
PRP42YDR235W ARH1P48360 493 aa5.27□□□□□ -1.57
PRP42YDR235W GRE2Q12068 342 aaKnown RBP5.26□□□□□ -1.57
PRP42YDR235W RGA1P39083 1007 aa5.25□□□□□ -1.57
PRP42YDR235W SRC1Q03707 834 aa5.23□□□□□ -1.57
PRP42YDR235W SPT23P35210 1082 aa5.23□□□□□ -1.57
PRP42YDR235W MID1P41821 548 aa5.22□□□□□ -1.57
PRP42YDR235W ATH1P48016 1211 aa5.19□□□□□ -1.58
PRP42YDR235W PEX29Q03370 554 aa5.19□□□□□ -1.58
PRP42YDR235W GUT1P32190 709 aa5.19□□□□□ -1.58
PRP42YDR235W MIF2P35201 549 aa5.16□□□□□ -1.58
PRP42YDR235W HAP5Q02516 242 aa5.15□□□□□ -1.58
PRP42YDR235W PTC3P34221 468 aaKnown RBP5.14□□□□□ -1.59
PRP42YDR235W NST1P53935 1240 aa5.14□□□□□ -1.59
PRP42YDR235W BNI4P53858 892 aa5.13□□□□□ -1.59
PRP42YDR235W YML082WQ04533 649 aaKnown RBP5.13□□□□□ -1.59
PRP42YDR235W PTC2P39966 464 aaKnown RBP5.12□□□□□ -1.59
PRP42YDR235W MPH3P0CE00 602 aa5.11□□□□□ -1.59
PRP42YDR235W EDS1P38073 919 aa5.11□□□□□ -1.59
PRP42YDR235W AI4P03878 556 aa5.1□□□□□ -1.59
PRP42YDR235W SOL3P38858 249 aa5.1□□□□□ -1.59
PRP42YDR235W MAK11P20484 414 aaKnown RBP5.08□□□□□ -1.6
PRP42YDR235W RAS1P01119 309 aa5.08□□□□□ -1.6
PRP42YDR235W MPC54Q08550 464 aa5.06□□□□□ -1.6
PRP42YDR235W ILV3P39522 585 aaKnown RBP5.05□□□□□ -1.6
PRP42YDR235W NMA111P53920 997 aa5.04□□□□□ -1.6
PRP42YDR235W COQ8P27697 501 aa5.01□□□□□ -1.61
PRP42YDR235W RAM2P29703 316 aa5.01□□□□□ -1.61
PRP42YDR235W TRK1P12685 1235 aa5.01□□□□□ -1.61
PRP42YDR235W YGR273CP53329 174 aa4.97□□□□□ -1.61
PRP42YDR235W DPL1Q05567 589 aa4.97□□□□□ -1.61
PRP42YDR235W AMS1P22855 1083 aa4.97□□□□□ -1.61
PRP42YDR235W YPR015CQ12531 247 aa4.97□□□□□ -1.61
PRP42YDR235W SLI15P38283 698 aa4.95□□□□□ -1.62
PRP42YDR235W GYP1Q08484 637 aa4.95□□□□□ -1.62
PRP42YDR235W RAM1P22007 431 aa4.92□□□□□ -1.62
PRP42YDR235W YPL062WQ02781 134 aa4.92□□□□□ -1.62
PRP42YDR235W ISU2Q12056 156 aa4.91□□□□□ -1.62
PRP42YDR235W NOP53Q12080 455 aaKnown RBP4.9□□□□□ -1.62
PRP42YDR235W SAS4Q04003 481 aa4.89□□□□□ -1.63
PRP42YDR235W YEL077CQ3E7X8 1277 aa4.86□□□□□ -1.63
PRP42YDR235W SDH2P21801 266 aa4.86□□□□□ -1.63
PRP42YDR235W CDC73Q06697 393 aa4.84□□□□□ -1.63
PRP42YDR235W PDR1P12383 1068 aa4.83□□□□□ -1.64
PRP42YDR235W KEX1P09620 729 aa4.83□□□□□ -1.64
PRP42YDR235W GBP2P25555 427 aaKnown RBP RIP-Chip data4.81□□□□□ -1.64not detected
PRP42YDR235W MRF1P30775 413 aaPredicted RBP4.81□□□□□ -1.64
PRP42YDR235W GAR1P28007 205 aaKnown RBP4.8□□□□□ -1.64
PRP42YDR235W BRE2P43132 505 aa4.79□□□□□ -1.64
PRP42YDR235W GCR2Q01722 534 aa4.78□□□□□ -1.64
PRP42YDR235W PRT1P06103 763 aaKnown RBP4.73□□□□□ -1.65
PRP42YDR235W ERG12P07277 443 aa4.73□□□□□ -1.65
PRP42YDR235W RPP1BP10622 106 aaKnown RBP4.73□□□□□ -1.65
PRP42YDR235W BUD20Q08004 166 aaPredicted RBP4.73□□□□□ -1.65
PRP42YDR235W AIR1P40507 360 aaKnown RBP4.72□□□□□ -1.65
PRP42YDR235W YLR326WQ06170 240 aaKnown RBP4.72□□□□□ -1.65
PRP42YDR235W UBP14P38237 781 aaKnown RBP4.71□□□□□ -1.66
PRP42YDR235W PCS60P38137 543 aaKnown RBP RIP-Chip data4.7□□□□□ -1.66not detected
PRP42YDR235W VHR2P40041 505 aa4.69□□□□□ -1.66
PRP42YDR235W CLA4P48562 842 aa4.69□□□□□ -1.66
PRP42YDR235W RAD54P32863 898 aa4.68□□□□□ -1.66
PRP42YDR235W CST6P40535 587 aa4.68□□□□□ -1.66
PRP42YDR235W YRR1Q12172 810 aa4.68□□□□□ -1.66
PRP42YDR235W PEX21P50091 288 aa4.67□□□□□ -1.66
PRP42YDR235W STR2P47164 639 aa4.66□□□□□ -1.66
PRP42YDR235W MET22P32179 357 aa4.65□□□□□ -1.66
PRP42YDR235W ISM1P48526 1002 aa4.65□□□□□ -1.66
PRP42YDR235W LAM6Q08001 693 aa4.64□□□□□ -1.67
PRP42YDR235W ENV9Q08651 330 aa4.64□□□□□ -1.67
PRP42YDR235W CDC4P07834 779 aa4.63□□□□□ -1.67
PRP42YDR235W SPT16P32558 1035 aaKnown RBP4.62□□□□□ -1.67
PRP42YDR235W NUD1P32336 851 aa4.61□□□□□ -1.67
PRP42YDR235W NPL4P33755 580 aa4.61□□□□□ -1.67
PRP42YDR235W FRK1Q03002 865 aaPredicted RBP4.61□□□□□ -1.67
PRP42YDR235W GCD11P32481 527 aaKnown RBP4.6□□□□□ -1.67
PRP42YDR235W TUM1Q08686 304 aaKnown RBP4.6□□□□□ -1.67
PRP42YDR235W TFB4Q12004 338 aa4.6□□□□□ -1.67
PRP42YDR235W SET1P38827 1080 aaKnown RBP4.59□□□□□ -1.67
PRP42YDR235W YDR444WQ04093 687 aa4.59□□□□□ -1.67
PRP42YDR235W CSC1Q06538 782 aa4.59□□□□□ -1.67
PRP42YDR235W KIC1P38692 1080 aa4.58□□□□□ -1.68
PRP42YDR235W GAP1P19145 602 aaPredicted RBP4.57□□□□□ -1.68
PRP42YDR235W BDP1P46678 594 aa4.57□□□□□ -1.68
PRP42YDR235W YDR090CQ03193 310 aa4.57□□□□□ -1.68
PRP42YDR235W TY1A-DR4O74302 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-HP0C2I4 478 aaKnown RBP4.56□□□□□ -1.68
PRP42YDR235W TY1A-AP0CX57 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-PR1P0CX58 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-ORP0CX59 440 aa4.56□□□□□ -1.68
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms