RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C HTA2P04912 132 aa8.63□□□□□ -1.03
NPL4YBR170C RCR1P38212 213 aa8.59□□□□□ -1.03
NPL4YBR170C PRE3P38624 215 aa8.59□□□□□ -1.03
NPL4YBR170C DCW1P36091 449 aa8.58□□□□□ -1.04
NPL4YBR170C PTC4P38089 393 aa8.57□□□□□ -1.04
NPL4YBR170C YEL023CP39992 682 aa8.56□□□□□ -1.04
NPL4YBR170C DMA1P38823 416 aa8.52□□□□□ -1.05
NPL4YBR170C GRE2Q12068 342 aaKnown RBP8.43□□□□□ -1.06
NPL4YBR170C XDJ1P39102 459 aa8.43□□□□□ -1.06
NPL4YBR170C VRP1P37370 817 aa8.42□□□□□ -1.06
NPL4YBR170C ELP4Q02884 456 aaKnown RBP8.41□□□□□ -1.06
NPL4YBR170C PML39Q03760 334 aa8.4□□□□□ -1.07
NPL4YBR170C TAF7Q05021 590 aa8.37□□□□□ -1.07
NPL4YBR170C ATH1P48016 1211 aa8.34□□□□□ -1.07
NPL4YBR170C MIF2P35201 549 aa8.34□□□□□ -1.07
NPL4YBR170C GUT1P32190 709 aa8.32□□□□□ -1.08
NPL4YBR170C YDR344CQ05510 147 aa8.32□□□□□ -1.08
NPL4YBR170C DPS1P04802 557 aaKnown RBP8.29□□□□□ -1.08
NPL4YBR170C ARH1P48360 493 aa8.29□□□□□ -1.08
NPL4YBR170C MAK11P20484 414 aaKnown RBP8.29□□□□□ -1.08
NPL4YBR170C PTC3P34221 468 aaKnown RBP8.27□□□□□ -1.09
NPL4YBR170C PEX29Q03370 554 aa8.25□□□□□ -1.09
NPL4YBR170C EDS1P38073 919 aa8.23□□□□□ -1.09
NPL4YBR170C MID1P41821 548 aa8.23□□□□□ -1.09
NPL4YBR170C SPT23P35210 1082 aa8.22□□□□□ -1.09
NPL4YBR170C RAM2P29703 316 aa8.18□□□□□ -1.1
NPL4YBR170C NST1P53935 1240 aa8.17□□□□□ -1.1
NPL4YBR170C AI4P03878 556 aa8.17□□□□□ -1.1
NPL4YBR170C MPH3P0CE00 602 aa8.16□□□□□ -1.1
NPL4YBR170C COQ8P27697 501 aa8.15□□□□□ -1.1
NPL4YBR170C HAP5Q02516 242 aa8.15□□□□□ -1.1
NPL4YBR170C SOL3P38858 249 aa8.12□□□□□ -1.11
NPL4YBR170C BNI4P53858 892 aa8.12□□□□□ -1.11
NPL4YBR170C LEO1P38439 464 aa8.11□□□□□ -1.11
NPL4YBR170C PTC2P39966 464 aaKnown RBP8.1□□□□□ -1.11
NPL4YBR170C YML082WQ04533 649 aaKnown RBP8.08□□□□□ -1.12
NPL4YBR170C ILV3P39522 585 aaKnown RBP8.05□□□□□ -1.12
NPL4YBR170C MPC54Q08550 464 aa8.03□□□□□ -1.12
NPL4YBR170C NOP53Q12080 455 aaKnown RBP8.03□□□□□ -1.12
NPL4YBR170C YGR273CP53329 174 aa8.02□□□□□ -1.13
NPL4YBR170C SRC1Q03707 834 aa8.02□□□□□ -1.13
NPL4YBR170C NMA111P53920 997 aa7.99□□□□□ -1.13
NPL4YBR170C DPL1Q05567 589 aa7.95□□□□□ -1.14
NPL4YBR170C SLI15P38283 698 aa7.93□□□□□ -1.14
NPL4YBR170C RGA2Q06407 1009 aa7.92□□□□□ -1.14
NPL4YBR170C RGA1P39083 1007 aa7.89□□□□□ -1.15
NPL4YBR170C SAS10Q12136 610 aaPredicted RBP7.88□□□□□ -1.15
NPL4YBR170C ISU2Q12056 156 aa7.87□□□□□ -1.15
NPL4YBR170C RAS1P01119 309 aa7.86□□□□□ -1.15
NPL4YBR170C LEU3P08638 886 aa7.85□□□□□ -1.15
NPL4YBR170C GYP1Q08484 637 aa7.84□□□□□ -1.15
NPL4YBR170C YPR015CQ12531 247 aa7.83□□□□□ -1.16
NPL4YBR170C KEX1P09620 729 aa7.82□□□□□ -1.16
NPL4YBR170C RAM1P22007 431 aa7.81□□□□□ -1.16
NPL4YBR170C AMS1P22855 1083 aa7.81□□□□□ -1.16
NPL4YBR170C TRK1P12685 1235 aa7.8□□□□□ -1.16
NPL4YBR170C SAS4Q04003 481 aa7.77□□□□□ -1.17
NPL4YBR170C CDC73Q06697 393 aa7.76□□□□□ -1.17
NPL4YBR170C RPP1BP10622 106 aaKnown RBP7.73□□□□□ -1.17
NPL4YBR170C YEL077CQ3E7X8 1277 aa7.72□□□□□ -1.17
NPL4YBR170C PDR1P12383 1068 aa7.7□□□□□ -1.18
NPL4YBR170C YLR326WQ06170 240 aaKnown RBP7.69□□□□□ -1.18
NPL4YBR170C MRF1P30775 413 aaPredicted RBP7.66□□□□□ -1.18
NPL4YBR170C RAD54P32863 898 aa7.66□□□□□ -1.18
NPL4YBR170C VHR2P40041 505 aa7.66□□□□□ -1.18
NPL4YBR170C UBP14P38237 781 aaKnown RBP7.66□□□□□ -1.18
NPL4YBR170C SDH2P21801 266 aa7.65□□□□□ -1.18
NPL4YBR170C SET1P38827 1080 aaKnown RBP7.65□□□□□ -1.18
NPL4YBR170C PCS60P38137 543 aaKnown RBP RIP-Chip data7.63□□□□□ -1.19not detected
NPL4YBR170C PEX21P50091 288 aa7.58□□□□□ -1.2
NPL4YBR170C RPN1P38764 993 aaKnown RBP7.58□□□□□ -1.2
NPL4YBR170C PRT1P06103 763 aaKnown RBP7.57□□□□□ -1.2
NPL4YBR170C ERG12P07277 443 aa7.55□□□□□ -1.2
NPL4YBR170C KIC1P38692 1080 aa7.55□□□□□ -1.2
NPL4YBR170C BUD20Q08004 166 aaPredicted RBP7.55□□□□□ -1.2
NPL4YBR170C YPL062WQ02781 134 aa7.55□□□□□ -1.2
NPL4YBR170C YRR1Q12172 810 aa7.55□□□□□ -1.2
NPL4YBR170C DMA2P53924 522 aa7.53□□□□□ -1.2
NPL4YBR170C BRE2P43132 505 aa7.51□□□□□ -1.21
NPL4YBR170C GCR2Q01722 534 aa7.51□□□□□ -1.21
NPL4YBR170C TFB4Q12004 338 aa7.5□□□□□ -1.21
NPL4YBR170C IFH1P39520 1085 aa7.49□□□□□ -1.21
NPL4YBR170C CSC1Q06538 782 aa7.49□□□□□ -1.21
NPL4YBR170C GBP2P25555 427 aaKnown RBP RIP-Chip data7.48□□□□□ -1.21not detected
NPL4YBR170C NPL4P33755 580 aa7.48□□□□□ -1.21
NPL4YBR170C STR2P47164 639 aa7.48□□□□□ -1.21
NPL4YBR170C YDR090CQ03193 310 aa7.47□□□□□ -1.21
NPL4YBR170C NUD1P32336 851 aa7.47□□□□□ -1.21
NPL4YBR170C ISM1P48526 1002 aa7.47□□□□□ -1.21
NPL4YBR170C TUM1Q08686 304 aaKnown RBP7.46□□□□□ -1.22
NPL4YBR170C GAP1P19145 602 aaPredicted RBP7.44□□□□□ -1.22
NPL4YBR170C GAR1P28007 205 aaKnown RBP7.44□□□□□ -1.22
NPL4YBR170C SPB4P25808 606 aaPredicted RBP7.44□□□□□ -1.22
NPL4YBR170C CKB1P43639 278 aa7.44□□□□□ -1.22
NPL4YBR170C YPR148CQ06523 435 aa7.44□□□□□ -1.22
NPL4YBR170C SPT16P32558 1035 aaKnown RBP7.43□□□□□ -1.22
NPL4YBR170C AIR1P40507 360 aaKnown RBP7.43□□□□□ -1.22
NPL4YBR170C CST6P40535 587 aa7.42□□□□□ -1.22
NPL4YBR170C VPS70P47161 811 aa7.41□□□□□ -1.22
NPL4YBR170C GCD11P32481 527 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms