RNA–Protein interactions for RNA: ENST00000641513.1

PHGDH-219, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-219ENST00000641513 SNAPC4Q5SXM2 1469 aa13.85□□□□□ -0.19
PHGDH-219ENST00000641513 PPARGC1BQ86YN6 1023 aaKnown RBP13.83□□□□□ -0.2
PHGDH-219ENST00000641513 VPS8Q8N3P4 1428 aa13.81□□□□□ -0.2
PHGDH-219ENST00000641513 ARAP1Q96P48 1450 aa13.81□□□□□ -0.2
PHGDH-219ENST00000641513 HRCP23327 699 aa13.81□□□□□ -0.2
PHGDH-219ENST00000641513 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
PHGDH-219ENST00000641513 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
PHGDH-219ENST00000641513 EFCAB5A4FU69 1503 aa13.77□□□□□ -0.21
PHGDH-219ENST00000641513 APLP2Q06481 763 aa13.77□□□□□ -0.21
PHGDH-219ENST00000641513 PCGF6Q9BYE7 350 aa13.77□□□□□ -0.21
PHGDH-219ENST00000641513 IQGAP2Q13576 1575 aa13.76□□□□□ -0.21
PHGDH-219ENST00000641513 TTBK1Q5TCY1 1321 aaPredicted RBP13.76□□□□□ -0.21
PHGDH-219ENST00000641513 FBLN2P98095 1184 aa13.76□□□□□ -0.21
PHGDH-219ENST00000641513 GRIN2AQ12879 1464 aa13.75□□□□□ -0.21
PHGDH-219ENST00000641513 TRIM26Q12899 539 aaPredicted RBP13.75□□□□□ -0.21
PHGDH-219ENST00000641513 P3H3Q8IVL6 736 aa13.75□□□□□ -0.21
PHGDH-219ENST00000641513 CHD1O14646 1710 aa13.75□□□□□ -0.21
PHGDH-219ENST00000641513 SYNJ2O15056 1496 aa13.74□□□□□ -0.21
PHGDH-219ENST00000641513 CHMP7Q8WUX9 453 aaPredicted RBP13.74□□□□□ -0.21
PHGDH-219ENST00000641513 SAMD9Q5K651 1589 aa13.71□□□□□ -0.21
PHGDH-219ENST00000641513 FHOD3Q2V2M9 1422 aa13.7□□□□□ -0.22
PHGDH-219ENST00000641513 CEP170Q5SW79 1584 aa13.69□□□□□ -0.22
PHGDH-219ENST00000641513 PCF11O94913 1555 aaKnown RBP13.67□□□□□ -0.22
PHGDH-219ENST00000641513 KIAA0586Q9BVV6 1533 aa13.66□□□□□ -0.22
PHGDH-219ENST00000641513 ATP1B4Q9UN42 357 aaPredicted RBP13.66□□□□□ -0.22
PHGDH-219ENST00000641513 UGGT2Q9NYU1 1516 aa13.64□□□□□ -0.23
PHGDH-219ENST00000641513 CFAP43Q8NDM7 1665 aa13.63□□□□□ -0.23
PHGDH-219ENST00000641513 FMN1Q68DA7 1419 aa13.62□□□□□ -0.23
PHGDH-219ENST00000641513 KIAA0556O60303 1618 aa13.61□□□□□ -0.23
PHGDH-219ENST00000641513 NUP160Q12769 1436 aa13.61□□□□□ -0.23
PHGDH-219ENST00000641513 TIAM1Q13009 1591 aa13.6□□□□□ -0.23
PHGDH-219ENST00000641513 LRRIQ1Q96JM4 1722 aa13.6□□□□□ -0.23
PHGDH-219ENST00000641513 FYCO1Q9BQS8 1478 aa13.6□□□□□ -0.23
PHGDH-219ENST00000641513 CASKIN1Q8WXD9 1431 aa13.58□□□□□ -0.24
PHGDH-219ENST00000641513 MAP3K1Q13233 1512 aa13.55□□□□□ -0.24
PHGDH-219ENST00000641513 DISP1Q96F81 1524 aa13.55□□□□□ -0.24
PHGDH-219ENST00000641513 HECW1Q76N89 1606 aa13.55□□□□□ -0.24
PHGDH-219ENST00000641513 KANK4Q5T7N3 995 aaPredicted RBP13.54□□□□□ -0.24
PHGDH-219ENST00000641513 CARMIL2Q6F5E8 1435 aa13.54□□□□□ -0.24
PHGDH-219ENST00000641513 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
PHGDH-219ENST00000641513 RAPGEF6Q8TEU7 1601 aa13.51□□□□□ -0.25
PHGDH-219ENST00000641513 ZEB1P37275 1124 aaPredicted RBP13.51□□□□□ -0.25
PHGDH-219ENST00000641513 LRRC9Q6ZRR7 1453 aa13.5□□□□□ -0.25
PHGDH-219ENST00000641513 SHROOM2Q13796 1616 aa13.48□□□□□ -0.25
PHGDH-219ENST00000641513 CCDC18Q5T9S5 1454 aa13.48□□□□□ -0.25
PHGDH-219ENST00000641513 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
PHGDH-219ENST00000641513 CLASP1Q7Z460 1538 aa13.45□□□□□ -0.26
PHGDH-219ENST00000641513 SUPT6HQ7KZ85 1726 aaKnown RBP13.45□□□□□ -0.26
PHGDH-219ENST00000641513 ARID3CA6NKF2 412 aa13.45□□□□□ -0.26
PHGDH-219ENST00000641513 MTUS2Q5JR59 1369 aa13.45□□□□□ -0.26
PHGDH-219ENST00000641513 EPRSP07814 1512 aaKnown RBP13.44□□□□□ -0.26
PHGDH-219ENST00000641513 CDK13Q14004 1512 aaKnown RBP13.44□□□□□ -0.26
PHGDH-219ENST00000641513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.42□□□□□ -0.26
PHGDH-219ENST00000641513 HNRNPUL2Q1KMD3 747 aaKnown RBP13.42□□□□□ -0.26
PHGDH-219ENST00000641513 EHBP1L1Q8N3D4 1523 aa13.42□□□□□ -0.26
PHGDH-219ENST00000641513 PLB1Q6P1J6 1458 aa13.41□□□□□ -0.26
PHGDH-219ENST00000641513 ERCC6L2Q5T890 1561 aa13.4□□□□□ -0.26
PHGDH-219ENST00000641513 NUP153P49790 1475 aaKnown RBP13.39□□□□□ -0.27
PHGDH-219ENST00000641513 ABCA8O94911 1581 aa13.38□□□□□ -0.27
PHGDH-219ENST00000641513 MAGI3Q5TCQ9 1506 aa13.38□□□□□ -0.27
PHGDH-219ENST00000641513 PTPRGP23470 1445 aa13.38□□□□□ -0.27
PHGDH-219ENST00000641513 RRBP1Q9P2E9 1410 aaKnown RBP13.37□□□□□ -0.27
PHGDH-219ENST00000641513 CCNB3Q8WWL7 1395 aa13.36□□□□□ -0.27
PHGDH-219ENST00000641513 PHLDB1Q86UU1 1377 aa13.35□□□□□ -0.27
PHGDH-219ENST00000641513 NCOA2Q15596 1464 aa13.35□□□□□ -0.27
PHGDH-219ENST00000641513 ITGAEP38570 1179 aa13.33□□□□□ -0.28
PHGDH-219ENST00000641513 FAM50AQ14320 339 aaKnown RBP13.33□□□□□ -0.28
PHGDH-219ENST00000641513 CDK11AQ9UQ88 783 aaPredicted RBP13.33□□□□□ -0.28
PHGDH-219ENST00000641513 OSCARQ8IYS5 282 aa13.32□□□□□ -0.28
PHGDH-219ENST00000641513 UACAQ9BZF9 1416 aa13.3□□□□□ -0.28
PHGDH-219ENST00000641513 ADCY10Q96PN6 1610 aa13.29□□□□□ -0.28
PHGDH-219ENST00000641513 PTPN23Q9H3S7 1636 aa13.29□□□□□ -0.28
PHGDH-219ENST00000641513 MYOM3Q5VTT5 1437 aa13.29□□□□□ -0.28
PHGDH-219ENST00000641513 ITSN2Q9NZM3 1697 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 FGD6Q6ZV73 1430 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 ATP10BO94823 1461 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 ARHGEF11O15085 1522 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 ABCC2Q92887 1545 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 KIF14Q15058 1648 aa13.28□□□□□ -0.28
PHGDH-219ENST00000641513 FOXD1Q16676 465 aa13.27□□□□□ -0.29
PHGDH-219ENST00000641513 CCER1Q8TC90 406 aaPredicted RBP13.27□□□□□ -0.29
PHGDH-219ENST00000641513 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.29
PHGDH-219ENST00000641513 ZCCHC11Q5TAX3 1644 aaKnown RBP13.25□□□□□ -0.29
PHGDH-219ENST00000641513 PLEKHD1A6NEE1 506 aa13.25□□□□□ -0.29
PHGDH-219ENST00000641513 CDC42BPAQ5VT25 1732 aa13.24□□□□□ -0.29
PHGDH-219ENST00000641513 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.2□□□□□ -0.3
PHGDH-219ENST00000641513 POTEDQ86YR6 584 aa13.2□□□□□ -0.3
PHGDH-219ENST00000641513 UHRF1BP1LA0JNW5 1464 aa13.2□□□□□ -0.3
PHGDH-219ENST00000641513 MIA2Q96PC5 1412 aa13.18□□□□□ -0.3
PHGDH-219ENST00000641513 MYO5CQ9NQX4 1742 aa13.18□□□□□ -0.3
PHGDH-219ENST00000641513 TCOF1Q13428 1488 aaKnown RBP13.17□□□□□ -0.3
PHGDH-219ENST00000641513 CDC42BPBQ9Y5S2 1711 aa13.16□□□□□ -0.3
PHGDH-219ENST00000641513 KDM5BQ9UGL1 1544 aa13.15□□□□□ -0.3
PHGDH-219ENST00000641513 GPATCH8Q9UKJ3 1502 aaKnown RBP13.14□□□□□ -0.31
PHGDH-219ENST00000641513 PREX2Q70Z35 1606 aa13.14□□□□□ -0.31
PHGDH-219ENST00000641513 CFDP1Q9UEE9 299 aaPredicted RBP13.14□□□□□ -0.31
PHGDH-219ENST00000641513 ZNF777Q9ULD5 760 aaPredicted RBP13.14□□□□□ -0.31
PHGDH-219ENST00000641513 ABCC10Q5T3U5 1492 aa13.14□□□□□ -0.31
PHGDH-219ENST00000641513 SETD5Q9C0A6 1442 aa13.13□□□□□ -0.31
PHGDH-219ENST00000641513 DNMT1P26358 1616 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms