RNA–Protein interactions for RNA: ENST00000638409.1

SCARB2-209, Transcript of scavenger receptor class B member 2, humanhuman

Gene SCARB2, Length 2,753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-209ENST00000638409 PROM2Q8N271 834 aa13.03□□□□□ -0.32
SCARB2-209ENST00000638409 WIZO95785 1651 aa13.01□□□□□ -0.33
SCARB2-209ENST00000638409 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
SCARB2-209ENST00000638409 CHGAP10645 457 aaKnown RBP12.97□□□□□ -0.33
SCARB2-209ENST00000638409 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
SCARB2-209ENST00000638409 TOP2AP11388 1531 aaKnown RBP12.9□□□□□ -0.34
SCARB2-209ENST00000638409 BRPF1P55201 1214 aaPredicted RBP12.88□□□□□ -0.35
SCARB2-209ENST00000638409 APLP2Q06481 763 aa12.84□□□□□ -0.35
SCARB2-209ENST00000638409 MKRN4PQ13434 485 aaPredicted RBP12.84□□□□□ -0.35
SCARB2-209ENST00000638409 SPOCK2Q92563 424 aa12.84□□□□□ -0.35
SCARB2-209ENST00000638409 ZNF219Q9P2Y4 722 aaPredicted RBP12.76□□□□□ -0.37
SCARB2-209ENST00000638409 LAMC3Q9Y6N6 1575 aa12.74□□□□□ -0.37
SCARB2-209ENST00000638409 CCDC88BA6NC98 1476 aa12.74□□□□□ -0.37
SCARB2-209ENST00000638409 DMRT2Q9Y5R5 561 aa12.73□□□□□ -0.37
SCARB2-209ENST00000638409 ARID3AQ99856 593 aa12.72□□□□□ -0.37
SCARB2-209ENST00000638409 CADPSQ9ULU8 1353 aa12.71□□□□□ -0.37
SCARB2-209ENST00000638409 NESP48681 1621 aa12.69□□□□□ -0.38
SCARB2-209ENST00000638409 CFTRP13569 1480 aa12.68□□□□□ -0.38
SCARB2-209ENST00000638409 NEUROD2Q15784 382 aa12.66□□□□□ -0.38
SCARB2-209ENST00000638409 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
SCARB2-209ENST00000638409 LMOD2Q6P5Q4 547 aa12.65□□□□□ -0.38
SCARB2-209ENST00000638409 NKX1-1Q15270 411 aaPredicted RBP12.64□□□□□ -0.39
SCARB2-209ENST00000638409 PDS5BQ9NTI5 1447 aa12.63□□□□□ -0.39
SCARB2-209ENST00000638409 PRDM2Q13029 1718 aa12.62□□□□□ -0.39
SCARB2-209ENST00000638409 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.6□□□□□ -0.39
SCARB2-209ENST00000638409 HS6ST3Q8IZP7 471 aa12.58□□□□□ -0.4
SCARB2-209ENST00000638409 ERCC6Q03468 1493 aa12.58□□□□□ -0.4
SCARB2-209ENST00000638409 KIF21AQ7Z4S6 1674 aa12.57□□□□□ -0.4
SCARB2-209ENST00000638409 U3KPZ7 1027 aaPredicted RBP12.57□□□□□ -0.4
SCARB2-209ENST00000638409 LOC105371045A0A1W2PR82 267 aa12.57□□□□□ -0.4
SCARB2-209ENST00000638409 C1orf115Q9H7X2 142 aa12.57□□□□□ -0.4
SCARB2-209ENST00000638409 CIZ1Q9ULV3 898 aaPredicted RBP12.56□□□□□ -0.4
SCARB2-209ENST00000638409 FANCD2Q9BXW9 1451 aa12.55□□□□□ -0.4
SCARB2-209ENST00000638409 GTPBP6O43824 516 aaPredicted RBP12.54□□□□□ -0.4
SCARB2-209ENST00000638409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.54□□□□□ -0.4
SCARB2-209ENST00000638409 HNRNPUL2Q1KMD3 747 aaKnown RBP12.54□□□□□ -0.4
SCARB2-209ENST00000638409 CEP164Q9UPV0 1460 aa12.52□□□□□ -0.41
SCARB2-209ENST00000638409 THOC2Q8NI27 1593 aaKnown RBP12.52□□□□□ -0.41
SCARB2-209ENST00000638409 ZMYND15Q9H091 742 aa12.52□□□□□ -0.41
SCARB2-209ENST00000638409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.51□□□□□ -0.41
SCARB2-209ENST00000638409 MSH5O43196 834 aa12.5□□□□□ -0.41
SCARB2-209ENST00000638409 SLC24A3Q9HC58 644 aa12.5□□□□□ -0.41
SCARB2-209ENST00000638409 MRC2Q9UBG0 1479 aa12.49□□□□□ -0.41
SCARB2-209ENST00000638409 RNF25Q96BH1 459 aaPredicted RBP12.48□□□□□ -0.41
SCARB2-209ENST00000638409 RSPH6AQ9H0K4 717 aa12.47□□□□□ -0.41
SCARB2-209ENST00000638409 CUX2O14529 1486 aa12.47□□□□□ -0.41
SCARB2-209ENST00000638409 WDR62O43379 1518 aa12.47□□□□□ -0.41
SCARB2-209ENST00000638409 NECTIN2Q92692 538 aa12.46□□□□□ -0.41
SCARB2-209ENST00000638409 ARID3CA6NKF2 412 aa12.45□□□□□ -0.42
SCARB2-209ENST00000638409 PLCD3Q8N3E9 789 aa12.45□□□□□ -0.42
SCARB2-209ENST00000638409 CCDC9Q9Y3X0 531 aaKnown RBP12.45□□□□□ -0.42
SCARB2-209ENST00000638409 KCNV2Q8TDN2 545 aa12.43□□□□□ -0.42
SCARB2-209ENST00000638409 PELP1Q8IZL8 1130 aaKnown RBP12.43□□□□□ -0.42
SCARB2-209ENST00000638409 ABCC8Q09428 1581 aa12.42□□□□□ -0.42
SCARB2-209ENST00000638409 URB2Q14146 1524 aaKnown RBP12.42□□□□□ -0.42
SCARB2-209ENST00000638409 ZC3H15Q8WU90 426 aaKnown RBP12.42□□□□□ -0.42
SCARB2-209ENST00000638409 DNMBPQ6XZF7 1577 aa12.38□□□□□ -0.43
SCARB2-209ENST00000638409 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
SCARB2-209ENST00000638409 ZBTB7CA1YPR0 619 aa12.36□□□□□ -0.43
SCARB2-209ENST00000638409 P3H3Q8IVL6 736 aa12.35□□□□□ -0.43
SCARB2-209ENST00000638409 DCAF8L1A6NGE4 600 aa12.34□□□□□ -0.43
SCARB2-209ENST00000638409 CUX1P39880 1505 aa12.33□□□□□ -0.44
SCARB2-209ENST00000638409 PDIA4P13667 645 aaKnown RBP12.32□□□□□ -0.44
SCARB2-209ENST00000638409 MIER1Q8N108 512 aa12.31□□□□□ -0.44
SCARB2-209ENST00000638409 IGSF3O75054 1194 aa12.29□□□□□ -0.44
SCARB2-209ENST00000638409 BIVM-ERCC5R4GMW8 1640 aa12.29□□□□□ -0.44
SCARB2-209ENST00000638409 WRNQ14191 1432 aaPredicted RBP eCLIP12.29□□□□□ -0.44
SCARB2-209ENST00000638409 APBB1O00213 710 aa12.29□□□□□ -0.44
SCARB2-209ENST00000638409 GPBP1L1Q9HC44 474 aaPredicted RBP12.29□□□□□ -0.44
SCARB2-209ENST00000638409 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
SCARB2-209ENST00000638409 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
SCARB2-209ENST00000638409 IFT140Q96RY7 1462 aa12.27□□□□□ -0.44
SCARB2-209ENST00000638409 POLA1P09884 1462 aaPredicted RBP12.27□□□□□ -0.45
SCARB2-209ENST00000638409 IL27Q8NEV9 243 aa12.26□□□□□ -0.45
SCARB2-209ENST00000638409 FGD5Q6ZNL6 1462 aa12.25□□□□□ -0.45
SCARB2-209ENST00000638409 SYNJ1O43426 1573 aa12.25□□□□□ -0.45
SCARB2-209ENST00000638409 TARBP1Q13395 1621 aaKnown RBP12.25□□□□□ -0.45
SCARB2-209ENST00000638409 STK25O00506 426 aa12.23□□□□□ -0.45
SCARB2-209ENST00000638409 SOGA1O94964 1423 aa12.22□□□□□ -0.45
SCARB2-209ENST00000638409 CADPS2Q86UW7 1296 aa12.21□□□□□ -0.45
SCARB2-209ENST00000638409 WDR97A6NE52 1622 aa12.21□□□□□ -0.45
SCARB2-209ENST00000638409 RAD54L2Q9Y4B4 1467 aa12.19□□□□□ -0.46
SCARB2-209ENST00000638409 MKRN3Q13064 507 aaKnown RBP12.18□□□□□ -0.46
SCARB2-209ENST00000638409 ABCA10Q8WWZ4 1543 aa12.17□□□□□ -0.46
SCARB2-209ENST00000638409 ZNF608Q9ULD9 1512 aaPredicted RBP12.17□□□□□ -0.46
SCARB2-209ENST00000638409 KCTD17Q8N5Z5 321 aa12.16□□□□□ -0.46
SCARB2-209ENST00000638409 STAG3Q9UJ98 1225 aa12.16□□□□□ -0.46
SCARB2-209ENST00000638409 POLA2Q14181 598 aa12.15□□□□□ -0.46
SCARB2-209ENST00000638409 EIF4G3O43432 1585 aaKnown RBP12.15□□□□□ -0.46
SCARB2-209ENST00000638409 TTBK1Q5TCY1 1321 aaPredicted RBP12.15□□□□□ -0.47
SCARB2-209ENST00000638409 SEMA3EO15041 775 aa12.14□□□□□ -0.47
SCARB2-209ENST00000638409 EIF5BO60841 1220 aaKnown RBP12.13□□□□□ -0.47
SCARB2-209ENST00000638409 ZNF428Q96B54 188 aa12.13□□□□□ -0.47
SCARB2-209ENST00000638409 ZMYND10O75800 440 aa12.12□□□□□ -0.47
SCARB2-209ENST00000638409 WDR70Q9NW82 654 aa12.12□□□□□ -0.47
SCARB2-209ENST00000638409 ABCA5Q8WWZ7 1642 aa12.12□□□□□ -0.47
SCARB2-209ENST00000638409 AQRO60306 1485 aaKnown RBP eCLIP12.11□□□□□ -0.47
SCARB2-209ENST00000638409 RIOK3O14730 519 aaKnown RBP12.11□□□□□ -0.47
SCARB2-209ENST00000638409 RAD21O60216 631 aa12.11□□□□□ -0.47
SCARB2-209ENST00000638409 CCDC82Q8N4S0 544 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms