RNA–Protein interactions for RNA: ENST00000638409.1

SCARB2-209, Transcript of scavenger receptor class B member 2, humanhuman

Gene SCARB2, Length 2,753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-209ENST00000638409 CHIC1Q5VXU3 224 aa19.82■□□□□ 0.76
SCARB2-209ENST00000638409 AEBP2Q6ZN18 517 aaPredicted RBP19.1■□□□□ 0.65
SCARB2-209ENST00000638409 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
SCARB2-209ENST00000638409 EHMT2Q96KQ7 1210 aa17.42■□□□□ 0.38
SCARB2-209ENST00000638409 NISCHQ9Y2I1 1504 aa17.09■□□□□ 0.33
SCARB2-209ENST00000638409 SLC24A1O60721 1099 aa17.06■□□□□ 0.32
SCARB2-209ENST00000638409 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
SCARB2-209ENST00000638409 KCNA4P22459 653 aa16.56■□□□□ 0.24
SCARB2-209ENST00000638409 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
SCARB2-209ENST00000638409 RTN4Q9NQC3 1192 aaKnown RBP16.19■□□□□ 0.18
SCARB2-209ENST00000638409 ADRA2BP18089 450 aa15.99■□□□□ 0.15
SCARB2-209ENST00000638409 SLC4A1APQ9BWU0 796 aaKnown RBP15.86■□□□□ 0.13
SCARB2-209ENST00000638409 AMER1Q5JTC6 1135 aaPredicted RBP15.78■□□□□ 0.12
SCARB2-209ENST00000638409 SENP3Q9H4L4 574 aaPredicted RBP15.59■□□□□ 0.09
SCARB2-209ENST00000638409 ZBTB22O15209 634 aa15.36■□□□□ 0.05
SCARB2-209ENST00000638409 PPP6R1Q9UPN7 881 aa15.35■□□□□ 0.05
SCARB2-209ENST00000638409 NCBP3Q53F19 620 aaKnown RBP15.23■□□□□ 0.03
SCARB2-209ENST00000638409 CCDC180Q9P1Z9 1646 aa15.17■□□□□ 0.02
SCARB2-209ENST00000638409 PRKCSHP14314 528 aaPredicted RBP15.12■□□□□ 0.01
SCARB2-209ENST00000638409 PPP4R3CPQ6ZMV5 832 aa15.01□□□□□ -0.01
SCARB2-209ENST00000638409 NPM3O75607 178 aaKnown RBP14.92□□□□□ -0.02
SCARB2-209ENST00000638409 FKBP8Q14318 412 aa14.7□□□□□ -0.06
SCARB2-209ENST00000638409 DAXXQ9UER7 740 aaPredicted RBP14.68□□□□□ -0.06
SCARB2-209ENST00000638409 TAOK2Q9UL54 1235 aa14.68□□□□□ -0.06
SCARB2-209ENST00000638409 PLCB2Q00722 1185 aa14.61□□□□□ -0.07
SCARB2-209ENST00000638409 ABCC9O60706 1549 aa14.6□□□□□ -0.07
SCARB2-209ENST00000638409 FOXD4L1Q9NU39 408 aa14.56□□□□□ -0.08
SCARB2-209ENST00000638409 FOXD1Q16676 465 aa14.55□□□□□ -0.08
SCARB2-209ENST00000638409 BCANQ96GW7 911 aa14.55□□□□□ -0.08
SCARB2-209ENST00000638409 TIMELESSQ9UNS1 1208 aa14.49□□□□□ -0.09
SCARB2-209ENST00000638409 HAP1P54257 671 aaPredicted RBP14.48□□□□□ -0.09
SCARB2-209ENST00000638409 TPRNQ4KMQ1 711 aa14.48□□□□□ -0.09
SCARB2-209ENST00000638409 TULP1O00294 542 aaPredicted RBP14.33□□□□□ -0.12
SCARB2-209ENST00000638409 ZCCHC6Q5VYS8 1495 aaKnown RBP14.27□□□□□ -0.13
SCARB2-209ENST00000638409 ARXQ96QS3 562 aa14.22□□□□□ -0.13
SCARB2-209ENST00000638409 MYO15BQ96JP2 1530 aa14.22□□□□□ -0.13
SCARB2-209ENST00000638409 NACADO15069 1562 aa14.22□□□□□ -0.13
SCARB2-209ENST00000638409 DCAF1Q9Y4B6 1507 aa14.2□□□□□ -0.14
SCARB2-209ENST00000638409 RB1CC1Q8TDY2 1594 aa14.18□□□□□ -0.14
SCARB2-209ENST00000638409 CNKSR2Q8WXI2 1034 aa14.11□□□□□ -0.15
SCARB2-209ENST00000638409 DCAF8L2P0C7V8 631 aa14.08□□□□□ -0.16
SCARB2-209ENST00000638409 VSIG10Q8N0Z9 540 aa14.07□□□□□ -0.16
SCARB2-209ENST00000638409 KDM2AQ9Y2K7 1162 aa14.06□□□□□ -0.16
SCARB2-209ENST00000638409 PIAS4Q8N2W9 510 aaPredicted RBP14.05□□□□□ -0.16
SCARB2-209ENST00000638409 FBLN2P98095 1184 aa14□□□□□ -0.17
SCARB2-209ENST00000638409 GTF3C3Q9Y5Q9 886 aa13.97□□□□□ -0.17
SCARB2-209ENST00000638409 HOMEZQ8IX15 550 aa13.87□□□□□ -0.19
SCARB2-209ENST00000638409 UNC13AQ9UPW8 1703 aa13.86□□□□□ -0.19
SCARB2-209ENST00000638409 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
SCARB2-209ENST00000638409 SLC4A2P04920 1241 aa13.77□□□□□ -0.21
SCARB2-209ENST00000638409 SCRIBQ14160 1630 aa13.76□□□□□ -0.21
SCARB2-209ENST00000638409 BICRAQ9NZM4 1560 aa13.75□□□□□ -0.21
SCARB2-209ENST00000638409 ATXN8OSP0DMR3 200 aa13.69□□□□□ -0.22
SCARB2-209ENST00000638409 SHROOM4Q9ULL8 1493 aa13.67□□□□□ -0.22
SCARB2-209ENST00000638409 TMEM132AQ24JP5 1023 aa13.67□□□□□ -0.22
SCARB2-209ENST00000638409 PABPN1Q86U42 306 aaKnown RBP eCLIP13.65□□□□□ -0.22
SCARB2-209ENST00000638409 PAXIP1Q6ZW49 1069 aaPredicted RBP13.63□□□□□ -0.23
SCARB2-209ENST00000638409 CFAP44Q96MT7 982 aa13.62□□□□□ -0.23
SCARB2-209ENST00000638409 PKD2Q13563 968 aa13.6□□□□□ -0.23
SCARB2-209ENST00000638409 PODXL2Q9NZ53 605 aa13.58□□□□□ -0.24
SCARB2-209ENST00000638409 MAPK8IP2Q13387 824 aaPredicted RBP13.58□□□□□ -0.24
SCARB2-209ENST00000638409 SCAF1Q9H7N4 1312 aaKnown RBP13.57□□□□□ -0.24
SCARB2-209ENST00000638409 C14orf37Q86TY3 774 aa13.57□□□□□ -0.24
SCARB2-209ENST00000638409 MYCNP04198 464 aaPredicted RBP13.54□□□□□ -0.24
SCARB2-209ENST00000638409 NPM1P06748 294 aaKnown RBP eCLIP13.54□□□□□ -0.24
SCARB2-209ENST00000638409 TSHZ2Q9NRE2 1034 aa13.54□□□□□ -0.24
SCARB2-209ENST00000638409 RANGAP1P46060 587 aaPredicted RBP13.51□□□□□ -0.25
SCARB2-209ENST00000638409 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.49□□□□□ -0.25
SCARB2-209ENST00000638409 ERICH6Q7L0X2 663 aa13.49□□□□□ -0.25
SCARB2-209ENST00000638409 IFNLR1Q8IU57 520 aaPredicted RBP13.49□□□□□ -0.25
SCARB2-209ENST00000638409 RNF216Q9NWF9 866 aaPredicted RBP13.46□□□□□ -0.25
SCARB2-209ENST00000638409 ATF5Q9Y2D1 282 aaPredicted RBP13.45□□□□□ -0.26
SCARB2-209ENST00000638409 BBXQ8WY36 941 aaPredicted RBP13.44□□□□□ -0.26
SCARB2-209ENST00000638409 VASPP50552 380 aaPredicted RBP13.43□□□□□ -0.26
SCARB2-209ENST00000638409 NBR1Q14596 966 aa13.42□□□□□ -0.26
SCARB2-209ENST00000638409 FBXO3Q9UK99 471 aa13.42□□□□□ -0.26
SCARB2-209ENST00000638409 SUPT5HO00267 1087 aaKnown RBP13.4□□□□□ -0.26
SCARB2-209ENST00000638409 EIF4G1Q04637 1599 aaKnown RBP13.36□□□□□ -0.27
SCARB2-209ENST00000638409 KLHL34Q8N239 644 aa13.35□□□□□ -0.27
SCARB2-209ENST00000638409 CC2D2AQ9P2K1 1620 aa13.26□□□□□ -0.29
SCARB2-209ENST00000638409 SPRYD3Q8NCJ5 442 aa13.26□□□□□ -0.29
SCARB2-209ENST00000638409 CECR2Q9BXF3 1484 aa13.25□□□□□ -0.29
SCARB2-209ENST00000638409 BAZ1AQ9NRL2 1556 aaPredicted RBP13.23□□□□□ -0.29
SCARB2-209ENST00000638409 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
SCARB2-209ENST00000638409 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
SCARB2-209ENST00000638409 TRIM26Q12899 539 aaPredicted RBP13.17□□□□□ -0.3
SCARB2-209ENST00000638409 NPM2Q86SE8 214 aaKnown RBP13.15□□□□□ -0.3
SCARB2-209ENST00000638409 ECM2O94769 699 aaPredicted RBP13.15□□□□□ -0.31
SCARB2-209ENST00000638409 MROH2BQ7Z745 1585 aa13.14□□□□□ -0.31
SCARB2-209ENST00000638409 PEG3Q9GZU2 1588 aa13.14□□□□□ -0.31
SCARB2-209ENST00000638409 SPDYE4A6NLX3 237 aa13.14□□□□□ -0.31
SCARB2-209ENST00000638409 DNAJC5Q9H3Z4 198 aa13.12□□□□□ -0.31
SCARB2-209ENST00000638409 SMARCA2P51531 1590 aa13.12□□□□□ -0.31
SCARB2-209ENST00000638409 NCAPD3P42695 1498 aa13.11□□□□□ -0.31
SCARB2-209ENST00000638409 ATAD2BQ9ULI0 1458 aa13.11□□□□□ -0.31
SCARB2-209ENST00000638409 RGL2O15211 777 aa13.11□□□□□ -0.31
SCARB2-209ENST00000638409 HMGXB3Q12766 1538 aa13.06□□□□□ -0.32
SCARB2-209ENST00000638409 RSF1Q96T23 1441 aaPredicted RBP13.05□□□□□ -0.32
SCARB2-209ENST00000638409 HOXD11P31277 338 aaPredicted RBP13.03□□□□□ -0.32
SCARB2-209ENST00000638409 HRCP23327 699 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms