RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 NUP160Q12769 1436 aa28.91■■■□□ 2.22
CLN3-263ENST00000637871 GOLGA3Q08378 1498 aa28.9■■■□□ 2.22
CLN3-263ENST00000637871 KIF21BO75037 1637 aa28.89■■■□□ 2.22
CLN3-263ENST00000637871 CLASP1Q7Z460 1538 aa28.88■■■□□ 2.21
CLN3-263ENST00000637871 CTTNBP2Q8WZ74 1663 aa28.77■■■□□ 2.2
CLN3-263ENST00000637871 CEP162Q5TB80 1403 aa28.75■■■□□ 2.19
CLN3-263ENST00000637871 HRCP23327 699 aa28.74■■■□□ 2.19
CLN3-263ENST00000637871 KIAA0586Q9BVV6 1533 aa28.73■■■□□ 2.19
CLN3-263ENST00000637871 UBTFP17480 764 aaKnown RBP28.72■■■□□ 2.19
CLN3-263ENST00000637871 IQGAP2Q13576 1575 aa28.7■■■□□ 2.19
CLN3-263ENST00000637871 SHROOM2Q13796 1616 aa28.67■■■□□ 2.18
CLN3-263ENST00000637871 DNAJC5Q9H3Z4 198 aa28.65■■■□□ 2.18
CLN3-263ENST00000637871 ERCC6L2Q5T890 1561 aa28.63■■■□□ 2.17
CLN3-263ENST00000637871 JPH4Q96JJ6 628 aa28.6■■■□□ 2.17
CLN3-263ENST00000637871 ARHGEF11O15085 1522 aa28.59■■■□□ 2.17
CLN3-263ENST00000637871 RIMBP3CA6NJZ7 1639 aa28.57■■■□□ 2.16
CLN3-263ENST00000637871 RIMBP3BA6NNM3 1639 aa28.57■■■□□ 2.16
CLN3-263ENST00000637871 RIMBP3Q9UFD9 1639 aa28.57■■■□□ 2.16
CLN3-263ENST00000637871 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
CLN3-263ENST00000637871 PRG4Q92954 1404 aaPredicted RBP28.56■■■□□ 2.16
CLN3-263ENST00000637871 UGGT2Q9NYU1 1516 aa28.52■■■□□ 2.16
CLN3-263ENST00000637871 DISP1Q96F81 1524 aa28.48■■■□□ 2.15
CLN3-263ENST00000637871 KIAA0556O60303 1618 aa28.44■■■□□ 2.14
CLN3-263ENST00000637871 CLIP1P30622 1438 aa28.43■■■□□ 2.14
CLN3-263ENST00000637871 ARAP1Q96P48 1450 aa28.41■■■□□ 2.14
CLN3-263ENST00000637871 SAMD9Q5K651 1589 aa28.4■■■□□ 2.14
CLN3-263ENST00000637871 TTBK1Q5TCY1 1321 aaPredicted RBP28.39■■■□□ 2.14
CLN3-263ENST00000637871 P3H3Q8IVL6 736 aa28.39■■■□□ 2.13
CLN3-263ENST00000637871 CARMIL2Q6F5E8 1435 aa28.38■■■□□ 2.13
CLN3-263ENST00000637871 ZEB1P37275 1124 aaPredicted RBP28.33■■■□□ 2.13
CLN3-263ENST00000637871 FHOD3Q2V2M9 1422 aa28.31■■■□□ 2.12
CLN3-263ENST00000637871 ARHGAP35Q9NRY4 1499 aa28.3■■■□□ 2.12
CLN3-263ENST00000637871 EFCAB5A4FU69 1503 aa28.3■■■□□ 2.12
CLN3-263ENST00000637871 CYB5RLQ6IPT4 315 aa28.29■■■□□ 2.12
CLN3-263ENST00000637871 VPS8Q8N3P4 1428 aa28.28■■■□□ 2.12
CLN3-263ENST00000637871 PTPRGP23470 1445 aa28.24■■■□□ 2.11
CLN3-263ENST00000637871 PLB1Q6P1J6 1458 aa28.14■■■□□ 2.1
CLN3-263ENST00000637871 APLP2Q06481 763 aa28.13■■■□□ 2.09
CLN3-263ENST00000637871 ADCY10Q96PN6 1610 aa28.12■■■□□ 2.09
CLN3-263ENST00000637871 PPARGC1BQ86YN6 1023 aaKnown RBP28.11■■■□□ 2.09
CLN3-263ENST00000637871 ABCA8O94911 1581 aa28.08■■■□□ 2.09
CLN3-263ENST00000637871 UACAQ9BZF9 1416 aa28.07■■■□□ 2.08
CLN3-263ENST00000637871 ABCC2Q92887 1545 aa28.04■■■□□ 2.08
CLN3-263ENST00000637871 RAPGEF6Q8TEU7 1601 aa28.04■■■□□ 2.08
CLN3-263ENST00000637871 FMN1Q68DA7 1419 aa28■■■□□ 2.07
CLN3-263ENST00000637871 ARID3CA6NKF2 412 aa28■■■□□ 2.07
CLN3-263ENST00000637871 PCF11O94913 1555 aaKnown RBP28■■■□□ 2.07
CLN3-263ENST00000637871 UHRF1BP1LA0JNW5 1464 aa27.98■■■□□ 2.07
CLN3-263ENST00000637871 NUP153P49790 1475 aaKnown RBP27.94■■■□□ 2.06
CLN3-263ENST00000637871 ATP1B4Q9UN42 357 aaPredicted RBP27.92■■■□□ 2.06
CLN3-263ENST00000637871 ZCCHC11Q5TAX3 1644 aaKnown RBP27.92■■■□□ 2.06
CLN3-263ENST00000637871 LRRIQ1Q96JM4 1722 aa27.9■■■□□ 2.06
CLN3-263ENST00000637871 HECW1Q76N89 1606 aa27.9■■■□□ 2.06
CLN3-263ENST00000637871 KDM5BQ9UGL1 1544 aa27.88■■■□□ 2.05
CLN3-263ENST00000637871 CASKIN1Q8WXD9 1431 aa27.87■■■□□ 2.05
CLN3-263ENST00000637871 CDK13Q14004 1512 aaKnown RBP27.87■■■□□ 2.05
CLN3-263ENST00000637871 FYCO1Q9BQS8 1478 aa27.85■■■□□ 2.05
CLN3-263ENST00000637871 ATP10BO94823 1461 aa27.84■■■□□ 2.05
CLN3-263ENST00000637871 NPM1P06748 294 aaKnown RBP eCLIP27.82■■■□□ 2.04
CLN3-263ENST00000637871 EPRSP07814 1512 aaKnown RBP27.81■■■□□ 2.04
CLN3-263ENST00000637871 MAP3K1Q13233 1512 aa27.8■■■□□ 2.04
CLN3-263ENST00000637871 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.78■■■□□ 2.04
CLN3-263ENST00000637871 HNRNPUL2Q1KMD3 747 aaKnown RBP27.78■■■□□ 2.04
CLN3-263ENST00000637871 MAPKBP1O60336 1514 aa27.75■■■□□ 2.03
CLN3-263ENST00000637871 ASXL2Q76L83 1435 aa27.75■■■□□ 2.03
CLN3-263ENST00000637871 CCER1Q8TC90 406 aaPredicted RBP27.7■■■□□ 2.02
CLN3-263ENST00000637871 CCDC18Q5T9S5 1454 aa27.69■■■□□ 2.02
CLN3-263ENST00000637871 WDR7Q9Y4E6 1490 aa27.67■■■□□ 2.02
CLN3-263ENST00000637871 CFAP43Q8NDM7 1665 aa27.65■■■□□ 2.02
CLN3-263ENST00000637871 MAGI3Q5TCQ9 1506 aa27.64■■■□□ 2.02
CLN3-263ENST00000637871 TIAM1Q13009 1591 aa27.62■■■□□ 2.01
CLN3-263ENST00000637871 DIP2BQ9P265 1576 aa27.61■■■□□ 2.01
CLN3-263ENST00000637871 KIF13AQ9H1H9 1805 aa27.6■■■□□ 2.01
CLN3-263ENST00000637871 KCNH8Q96L42 1107 aa27.59■■■□□ 2.01
CLN3-263ENST00000637871 ABCC10Q5T3U5 1492 aa27.58■■■□□ 2.01
CLN3-263ENST00000637871 PLEKHD1A6NEE1 506 aa27.56■■■□□ 2
CLN3-263ENST00000637871 TRHP20396 242 aaPredicted RBP27.56■■■□□ 2
CLN3-263ENST00000637871 RRBP1Q9P2E9 1410 aaKnown RBP27.56■■■□□ 2
CLN3-263ENST00000637871 KANK4Q5T7N3 995 aaPredicted RBP27.55■■■□□ 2
CLN3-263ENST00000637871 KIF14Q15058 1648 aa27.54■■■□□ 2
CLN3-263ENST00000637871 TROQ12816 1431 aaPredicted RBP27.53■■■□□ 2
CLN3-263ENST00000637871 FAM69CQ0P6D2 419 aa27.52■■■□□ 2
CLN3-263ENST00000637871 CDK11AQ9UQ88 783 aaPredicted RBP27.52■■■□□ 2
CLN3-263ENST00000637871 MTUS2Q5JR59 1369 aa27.49■■□□□ 1.99
CLN3-263ENST00000637871 TTC37Q6PGP7 1564 aa27.48■■□□□ 1.99
CLN3-263ENST00000637871 EHBP1L1Q8N3D4 1523 aa27.47■■□□□ 1.99
CLN3-263ENST00000637871 LRRC9Q6ZRR7 1453 aa27.46■■□□□ 1.99
CLN3-263ENST00000637871 GLI2P10070 1586 aa27.46■■□□□ 1.99
CLN3-263ENST00000637871 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.45■■□□□ 1.99
CLN3-263ENST00000637871 TSPOAP1O95153 1857 aa27.44■■□□□ 1.98
CLN3-263ENST00000637871 ABCA9Q8IUA7 1624 aa27.43■■□□□ 1.98
CLN3-263ENST00000637871 MAP3K4Q9Y6R4 1608 aa27.43■■□□□ 1.98
CLN3-263ENST00000637871 CCNB3Q8WWL7 1395 aa27.41■■□□□ 1.98
CLN3-263ENST00000637871 PPRC1Q5VV67 1664 aaKnown RBP27.37■■□□□ 1.97
CLN3-263ENST00000637871 SUPT6HQ7KZ85 1726 aaKnown RBP27.36■■□□□ 1.97
CLN3-263ENST00000637871 CLSPNQ9HAW4 1339 aa27.35■■□□□ 1.97
CLN3-263ENST00000637871 CD109Q6YHK3 1445 aa27.34■■□□□ 1.97
CLN3-263ENST00000637871 NCOA2Q15596 1464 aa27.33■■□□□ 1.96
CLN3-263ENST00000637871 MYO5CQ9NQX4 1742 aa27.31■■□□□ 1.96
CLN3-263ENST00000637871 CDC42BPAQ5VT25 1732 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms