RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 CLIP1P30622 1438 aa30.34■■■□□ 2.45
CLN3-258ENST00000637184 RANGAP1P46060 587 aaPredicted RBP30.33■■■□□ 2.45
CLN3-258ENST00000637184 CHD1O14646 1710 aa30.23■■■□□ 2.43
CLN3-258ENST00000637184 CEP170Q5SW79 1584 aa30.2■■■□□ 2.42
CLN3-258ENST00000637184 IQGAP2Q13576 1575 aa30.19■■■□□ 2.42
CLN3-258ENST00000637184 KIAA0586Q9BVV6 1533 aa30.18■■■□□ 2.42
CLN3-258ENST00000637184 NUP160Q12769 1436 aa30.18■■■□□ 2.42
CLN3-258ENST00000637184 ARHGAP35Q9NRY4 1499 aa30.15■■■□□ 2.42
CLN3-258ENST00000637184 EFCAB5A4FU69 1503 aa30.1■■■□□ 2.41
CLN3-258ENST00000637184 ARAP1Q96P48 1450 aa30.07■■■□□ 2.4
CLN3-258ENST00000637184 SAMD9Q5K651 1589 aa30.03■■■□□ 2.4
CLN3-258ENST00000637184 UGGT2Q9NYU1 1516 aa30.03■■■□□ 2.4
CLN3-258ENST00000637184 VPS8Q8N3P4 1428 aa30.01■■■□□ 2.4
CLN3-258ENST00000637184 P3H3Q8IVL6 736 aa30.01■■■□□ 2.39
CLN3-258ENST00000637184 FHOD3Q2V2M9 1422 aa29.96■■■□□ 2.39
CLN3-258ENST00000637184 JPH4Q96JJ6 628 aa29.95■■■□□ 2.39
CLN3-258ENST00000637184 DISP1Q96F81 1524 aa29.89■■■□□ 2.38
CLN3-258ENST00000637184 KIAA0556O60303 1618 aa29.88■■■□□ 2.37
CLN3-258ENST00000637184 CLASP1Q7Z460 1538 aa29.87■■■□□ 2.37
CLN3-258ENST00000637184 FMN1Q68DA7 1419 aa29.84■■■□□ 2.37
CLN3-258ENST00000637184 CARMIL2Q6F5E8 1435 aa29.84■■■□□ 2.37
CLN3-258ENST00000637184 SHROOM2Q13796 1616 aa29.83■■■□□ 2.37
CLN3-258ENST00000637184 OSCARQ8IYS5 282 aa29.81■■■□□ 2.36
CLN3-258ENST00000637184 PRG4Q92954 1404 aaPredicted RBP29.78■■■□□ 2.36
CLN3-258ENST00000637184 APLP2Q06481 763 aa29.75■■■□□ 2.35
CLN3-258ENST00000637184 PCF11O94913 1555 aaKnown RBP29.73■■■□□ 2.35
CLN3-258ENST00000637184 CASKIN1Q8WXD9 1431 aa29.71■■■□□ 2.35
CLN3-258ENST00000637184 FYCO1Q9BQS8 1478 aa29.7■■■□□ 2.34
CLN3-258ENST00000637184 TTBK1Q5TCY1 1321 aaPredicted RBP29.68■■■□□ 2.34
CLN3-258ENST00000637184 ATP1B4Q9UN42 357 aaPredicted RBP29.67■■■□□ 2.34
CLN3-258ENST00000637184 PPARGC1BQ86YN6 1023 aaKnown RBP29.64■■■□□ 2.34
CLN3-258ENST00000637184 ERCC6L2Q5T890 1561 aa29.61■■■□□ 2.33
CLN3-258ENST00000637184 MAP3K1Q13233 1512 aa29.57■■■□□ 2.32
CLN3-258ENST00000637184 PTPRGP23470 1445 aa29.57■■■□□ 2.32
CLN3-258ENST00000637184 HECW1Q76N89 1606 aa29.56■■■□□ 2.32
CLN3-258ENST00000637184 TIAM1Q13009 1591 aa29.55■■■□□ 2.32
CLN3-258ENST00000637184 RAPGEF6Q8TEU7 1601 aa29.55■■■□□ 2.32
CLN3-258ENST00000637184 CFAP43Q8NDM7 1665 aa29.51■■■□□ 2.32
CLN3-258ENST00000637184 PLB1Q6P1J6 1458 aa29.51■■■□□ 2.31
CLN3-258ENST00000637184 LRRIQ1Q96JM4 1722 aa29.5■■■□□ 2.31
CLN3-258ENST00000637184 CCDC18Q5T9S5 1454 aa29.47■■■□□ 2.31
CLN3-258ENST00000637184 ABCA8O94911 1581 aa29.47■■■□□ 2.31
CLN3-258ENST00000637184 KANK4Q5T7N3 995 aaPredicted RBP29.47■■■□□ 2.31
CLN3-258ENST00000637184 EPRSP07814 1512 aaKnown RBP29.45■■■□□ 2.3
CLN3-258ENST00000637184 NUP153P49790 1475 aaKnown RBP29.44■■■□□ 2.3
CLN3-258ENST00000637184 LRRC9Q6ZRR7 1453 aa29.41■■■□□ 2.3
CLN3-258ENST00000637184 UACAQ9BZF9 1416 aa29.4■■■□□ 2.3
CLN3-258ENST00000637184 ARID3CA6NKF2 412 aa29.39■■■□□ 2.29
CLN3-258ENST00000637184 CDK13Q14004 1512 aaKnown RBP29.38■■■□□ 2.29
CLN3-258ENST00000637184 TRIM26Q12899 539 aaPredicted RBP29.36■■■□□ 2.29
CLN3-258ENST00000637184 MTUS2Q5JR59 1369 aa29.32■■■□□ 2.28
CLN3-258ENST00000637184 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.31■■■□□ 2.28
CLN3-258ENST00000637184 HNRNPUL2Q1KMD3 747 aaKnown RBP29.31■■■□□ 2.28
CLN3-258ENST00000637184 ABCC2Q92887 1545 aa29.31■■■□□ 2.28
CLN3-258ENST00000637184 ARHGEF11O15085 1522 aa29.29■■■□□ 2.28
CLN3-258ENST00000637184 CDK11AQ9UQ88 783 aaPredicted RBP29.27■■■□□ 2.28
CLN3-258ENST00000637184 EHBP1L1Q8N3D4 1523 aa29.27■■■□□ 2.28
CLN3-258ENST00000637184 UHRF1BP1LA0JNW5 1464 aa29.26■■■□□ 2.28
CLN3-258ENST00000637184 ATP10BO94823 1461 aa29.26■■■□□ 2.28
CLN3-258ENST00000637184 MAGI3Q5TCQ9 1506 aa29.25■■■□□ 2.27
CLN3-258ENST00000637184 PCGF6Q9BYE7 350 aa29.22■■■□□ 2.27
CLN3-258ENST00000637184 SUPT6HQ7KZ85 1726 aaKnown RBP29.18■■■□□ 2.26
CLN3-258ENST00000637184 RIMBP3CA6NJZ7 1639 aa29.18■■■□□ 2.26
CLN3-258ENST00000637184 RIMBP3BA6NNM3 1639 aa29.18■■■□□ 2.26
CLN3-258ENST00000637184 RIMBP3Q9UFD9 1639 aa29.18■■■□□ 2.26
CLN3-258ENST00000637184 ADCY10Q96PN6 1610 aa29.17■■■□□ 2.26
CLN3-258ENST00000637184 PLEKHD1A6NEE1 506 aa29.15■■■□□ 2.26
CLN3-258ENST00000637184 TROQ12816 1431 aaPredicted RBP29.14■■■□□ 2.26
CLN3-258ENST00000637184 KDM5BQ9UGL1 1544 aa29.14■■■□□ 2.26
CLN3-258ENST00000637184 NCOA2Q15596 1464 aa29.13■■■□□ 2.25
CLN3-258ENST00000637184 ZCCHC11Q5TAX3 1644 aaKnown RBP29.12■■■□□ 2.25
CLN3-258ENST00000637184 PHLDB1Q86UU1 1377 aa29.11■■■□□ 2.25
CLN3-258ENST00000637184 RRBP1Q9P2E9 1410 aaKnown RBP29.04■■■□□ 2.24
CLN3-258ENST00000637184 CYB5RLQ6IPT4 315 aa29.03■■■□□ 2.24
CLN3-258ENST00000637184 KIF14Q15058 1648 aa29■■■□□ 2.23
CLN3-258ENST00000637184 NPM1P06748 294 aaKnown RBP eCLIP29■■■□□ 2.23
CLN3-258ENST00000637184 CCNB3Q8WWL7 1395 aa28.99■■■□□ 2.23
CLN3-258ENST00000637184 MYOM3Q5VTT5 1437 aa28.99■■■□□ 2.23
CLN3-258ENST00000637184 FGD6Q6ZV73 1430 aa28.94■■■□□ 2.22
CLN3-258ENST00000637184 ABCC10Q5T3U5 1492 aa28.88■■■□□ 2.21
CLN3-258ENST00000637184 WDR7Q9Y4E6 1490 aa28.88■■■□□ 2.21
CLN3-258ENST00000637184 KCNH8Q96L42 1107 aa28.88■■■□□ 2.21
CLN3-258ENST00000637184 ASXL2Q76L83 1435 aa28.87■■■□□ 2.21
CLN3-258ENST00000637184 MIA2Q96PC5 1412 aa28.87■■■□□ 2.21
CLN3-258ENST00000637184 FAM50AQ14320 339 aaKnown RBP28.87■■■□□ 2.21
CLN3-258ENST00000637184 ITSN2Q9NZM3 1697 aa28.86■■■□□ 2.21
CLN3-258ENST00000637184 GPATCH8Q9UKJ3 1502 aaKnown RBP28.84■■■□□ 2.21
CLN3-258ENST00000637184 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.84■■■□□ 2.21
CLN3-258ENST00000637184 PTPN23Q9H3S7 1636 aa28.83■■■□□ 2.21
CLN3-258ENST00000637184 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.82■■■□□ 2.2
CLN3-258ENST00000637184 CDC42BPAQ5VT25 1732 aa28.81■■■□□ 2.2
CLN3-258ENST00000637184 TTC37Q6PGP7 1564 aa28.8■■■□□ 2.2
CLN3-258ENST00000637184 CFDP1Q9UEE9 299 aaPredicted RBP28.79■■■□□ 2.2
CLN3-258ENST00000637184 TCOF1Q13428 1488 aaKnown RBP28.78■■■□□ 2.2
CLN3-258ENST00000637184 MAPKBP1O60336 1514 aa28.75■■■□□ 2.19
CLN3-258ENST00000637184 ITGAEP38570 1179 aa28.75■■■□□ 2.19
CLN3-258ENST00000637184 MYO5CQ9NQX4 1742 aa28.73■■■□□ 2.19
CLN3-258ENST00000637184 PREX2Q70Z35 1606 aa28.73■■■□□ 2.19
CLN3-258ENST00000637184 CDC42BPBQ9Y5S2 1711 aa28.71■■■□□ 2.19
CLN3-258ENST00000637184 ZNF777Q9ULD5 760 aaPredicted RBP28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms