RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 KIF21BO75037 1637 aa27.95■■■□□ 2.07
CLN3-256ENST00000637107 KIAA0586Q9BVV6 1533 aa27.93■■■□□ 2.06
CLN3-256ENST00000637107 JPH4Q96JJ6 628 aa27.86■■■□□ 2.05
CLN3-256ENST00000637107 CTTNBP2Q8WZ74 1663 aa27.85■■■□□ 2.05
CLN3-256ENST00000637107 SHROOM2Q13796 1616 aa27.84■■■□□ 2.05
CLN3-256ENST00000637107 IQGAP2Q13576 1575 aa27.83■■■□□ 2.05
CLN3-256ENST00000637107 ARHGEF11O15085 1522 aa27.83■■■□□ 2.05
CLN3-256ENST00000637107 GOLGA3Q08378 1498 aa27.82■■■□□ 2.04
CLN3-256ENST00000637107 RIMBP3CA6NJZ7 1639 aa27.79■■■□□ 2.04
CLN3-256ENST00000637107 RIMBP3BA6NNM3 1639 aa27.79■■■□□ 2.04
CLN3-256ENST00000637107 RIMBP3Q9UFD9 1639 aa27.79■■■□□ 2.04
CLN3-256ENST00000637107 ERCC6L2Q5T890 1561 aa27.78■■■□□ 2.04
CLN3-256ENST00000637107 UBTFP17480 764 aaKnown RBP27.77■■■□□ 2.04
CLN3-256ENST00000637107 PRG4Q92954 1404 aaPredicted RBP27.76■■■□□ 2.04
CLN3-256ENST00000637107 UGGT2Q9NYU1 1516 aa27.68■■■□□ 2.02
CLN3-256ENST00000637107 RANGAP1P46060 587 aaPredicted RBP27.66■■■□□ 2.02
CLN3-256ENST00000637107 DISP1Q96F81 1524 aa27.64■■■□□ 2.01
CLN3-256ENST00000637107 ARAP1Q96P48 1450 aa27.64■■■□□ 2.01
CLN3-256ENST00000637107 CARMIL2Q6F5E8 1435 aa27.6■■■□□ 2.01
CLN3-256ENST00000637107 CYB5RLQ6IPT4 315 aa27.59■■■□□ 2.01
CLN3-256ENST00000637107 KIAA0556O60303 1618 aa27.57■■■□□ 2
CLN3-256ENST00000637107 TNIKQ9UKE5 1360 aa27.55■■■□□ 2
CLN3-256ENST00000637107 P3H3Q8IVL6 736 aa27.53■■■□□ 2
CLN3-256ENST00000637107 TTBK1Q5TCY1 1321 aaPredicted RBP27.53■■■□□ 2
CLN3-256ENST00000637107 SAMD9Q5K651 1589 aa27.51■■□□□ 1.99
CLN3-256ENST00000637107 PTPRGP23470 1445 aa27.47■■□□□ 1.99
CLN3-256ENST00000637107 EFCAB5A4FU69 1503 aa27.42■■□□□ 1.98
CLN3-256ENST00000637107 ARHGAP35Q9NRY4 1499 aa27.41■■□□□ 1.98
CLN3-256ENST00000637107 FHOD3Q2V2M9 1422 aa27.41■■□□□ 1.98
CLN3-256ENST00000637107 CLIP1P30622 1438 aa27.35■■□□□ 1.97
CLN3-256ENST00000637107 PCGF6Q9BYE7 350 aa27.34■■□□□ 1.97
CLN3-256ENST00000637107 CEP162Q5TB80 1403 aa27.34■■□□□ 1.97
CLN3-256ENST00000637107 PLB1Q6P1J6 1458 aa27.31■■□□□ 1.96
CLN3-256ENST00000637107 ADCY10Q96PN6 1610 aa27.3■■□□□ 1.96
CLN3-256ENST00000637107 UACAQ9BZF9 1416 aa27.29■■□□□ 1.96
CLN3-256ENST00000637107 ABCA8O94911 1581 aa27.24■■□□□ 1.95
CLN3-256ENST00000637107 ABCC2Q92887 1545 aa27.23■■□□□ 1.95
CLN3-256ENST00000637107 UHRF1BP1LA0JNW5 1464 aa27.21■■□□□ 1.95
CLN3-256ENST00000637107 FMN1Q68DA7 1419 aa27.18■■□□□ 1.94
CLN3-256ENST00000637107 RAPGEF6Q8TEU7 1601 aa27.17■■□□□ 1.94
CLN3-256ENST00000637107 ARID3CA6NKF2 412 aa27.14■■□□□ 1.93
CLN3-256ENST00000637107 NPM1P06748 294 aaKnown RBP eCLIP27.14■■□□□ 1.93
CLN3-256ENST00000637107 TRIM26Q12899 539 aaPredicted RBP27.13■■□□□ 1.93
CLN3-256ENST00000637107 KDM5BQ9UGL1 1544 aa27.11■■□□□ 1.93
CLN3-256ENST00000637107 NUP153P49790 1475 aaKnown RBP27.1■■□□□ 1.93
CLN3-256ENST00000637107 ATP1B4Q9UN42 357 aaPredicted RBP27.08■■□□□ 1.93
CLN3-256ENST00000637107 ZCCHC11Q5TAX3 1644 aaKnown RBP27.08■■□□□ 1.93
CLN3-256ENST00000637107 PCF11O94913 1555 aaKnown RBP27.06■■□□□ 1.92
CLN3-256ENST00000637107 ATP10BO94823 1461 aa27.05■■□□□ 1.92
CLN3-256ENST00000637107 HRCP23327 699 aa27.04■■□□□ 1.92
CLN3-256ENST00000637107 CASKIN1Q8WXD9 1431 aa27.02■■□□□ 1.92
CLN3-256ENST00000637107 HECW1Q76N89 1606 aa27.01■■□□□ 1.91
CLN3-256ENST00000637107 MAPKBP1O60336 1514 aa27.01■■□□□ 1.91
CLN3-256ENST00000637107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.98■■□□□ 1.91
CLN3-256ENST00000637107 HNRNPUL2Q1KMD3 747 aaKnown RBP26.98■■□□□ 1.91
CLN3-256ENST00000637107 ASXL2Q76L83 1435 aa26.98■■□□□ 1.91
CLN3-256ENST00000637107 LRRIQ1Q96JM4 1722 aa26.97■■□□□ 1.91
CLN3-256ENST00000637107 FYCO1Q9BQS8 1478 aa26.97■■□□□ 1.91
CLN3-256ENST00000637107 CDK13Q14004 1512 aaKnown RBP26.97■■□□□ 1.91
CLN3-256ENST00000637107 EPRSP07814 1512 aaKnown RBP26.96■■□□□ 1.91
CLN3-256ENST00000637107 VPS8Q8N3P4 1428 aa26.96■■□□□ 1.91
CLN3-256ENST00000637107 TRHP20396 242 aaPredicted RBP26.9■■□□□ 1.9
CLN3-256ENST00000637107 WDR7Q9Y4E6 1490 aa26.88■■□□□ 1.89
CLN3-256ENST00000637107 ABCC10Q5T3U5 1492 aa26.85■■□□□ 1.89
CLN3-256ENST00000637107 CCDC18Q5T9S5 1454 aa26.85■■□□□ 1.89
CLN3-256ENST00000637107 KCNH8Q96L42 1107 aa26.84■■□□□ 1.89
CLN3-256ENST00000637107 DIP2BQ9P265 1576 aa26.83■■□□□ 1.89
CLN3-256ENST00000637107 PLEKHD1A6NEE1 506 aa26.82■■□□□ 1.88
CLN3-256ENST00000637107 KIF13AQ9H1H9 1805 aa26.82■■□□□ 1.88
CLN3-256ENST00000637107 FAM69CQ0P6D2 419 aa26.82■■□□□ 1.88
CLN3-256ENST00000637107 CDK11AQ9UQ88 783 aaPredicted RBP26.77■■□□□ 1.88
CLN3-256ENST00000637107 MAGI3Q5TCQ9 1506 aa26.76■■□□□ 1.87
CLN3-256ENST00000637107 GLI2P10070 1586 aa26.72■■□□□ 1.87
CLN3-256ENST00000637107 TROQ12816 1431 aaPredicted RBP26.71■■□□□ 1.87
CLN3-256ENST00000637107 TIAM1Q13009 1591 aa26.7■■□□□ 1.87
CLN3-256ENST00000637107 CFAP43Q8NDM7 1665 aa26.7■■□□□ 1.86
CLN3-256ENST00000637107 PPARGC1BQ86YN6 1023 aaKnown RBP26.67■■□□□ 1.86
CLN3-256ENST00000637107 KIF14Q15058 1648 aa26.66■■□□□ 1.86
CLN3-256ENST00000637107 MTUS2Q5JR59 1369 aa26.65■■□□□ 1.86
CLN3-256ENST00000637107 TSPOAP1O95153 1857 aa26.65■■□□□ 1.86
CLN3-256ENST00000637107 MAP3K4Q9Y6R4 1608 aa26.64■■□□□ 1.86
CLN3-256ENST00000637107 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.64■■□□□ 1.86
CLN3-256ENST00000637107 APLP2Q06481 763 aa26.64■■□□□ 1.86
CLN3-256ENST00000637107 ABCA9Q8IUA7 1624 aa26.64■■□□□ 1.85
CLN3-256ENST00000637107 MAP3K1Q13233 1512 aa26.64■■□□□ 1.85
CLN3-256ENST00000637107 KANK4Q5T7N3 995 aaPredicted RBP26.63■■□□□ 1.85
CLN3-256ENST00000637107 TTC37Q6PGP7 1564 aa26.61■■□□□ 1.85
CLN3-256ENST00000637107 CD109Q6YHK3 1445 aa26.61■■□□□ 1.85
CLN3-256ENST00000637107 LRRC9Q6ZRR7 1453 aa26.59■■□□□ 1.85
CLN3-256ENST00000637107 EHBP1L1Q8N3D4 1523 aa26.59■■□□□ 1.85
CLN3-256ENST00000637107 PPRC1Q5VV67 1664 aaKnown RBP26.57■■□□□ 1.84
CLN3-256ENST00000637107 SUPT6HQ7KZ85 1726 aaKnown RBP26.48■■□□□ 1.83
CLN3-256ENST00000637107 MYO5CQ9NQX4 1742 aa26.48■■□□□ 1.83
CLN3-256ENST00000637107 NCOA2Q15596 1464 aa26.47■■□□□ 1.83
CLN3-256ENST00000637107 PLCH2O75038 1416 aa26.47■■□□□ 1.83
CLN3-256ENST00000637107 TEX14Q8IWB6 1497 aa26.45■■□□□ 1.82
CLN3-256ENST00000637107 CDC42BPAQ5VT25 1732 aa26.44■■□□□ 1.82
CLN3-256ENST00000637107 CCNB3Q8WWL7 1395 aa26.42■■□□□ 1.82
CLN3-256ENST00000637107 CDC42BPBQ9Y5S2 1711 aa26.42■■□□□ 1.82
CLN3-256ENST00000637107 GPATCH8Q9UKJ3 1502 aaKnown RBP26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms