RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GRIN2AQ12879 1464 aa31.82■■■□□ 2.68
CLN3-250ENST00000636839 ARHGAP35Q9NRY4 1499 aa31.8■■■□□ 2.68
CLN3-250ENST00000636839 CTTNBP2Q8WZ74 1663 aa31.8■■■□□ 2.68
CLN3-250ENST00000636839 P3H3Q8IVL6 736 aa31.76■■■□□ 2.68
CLN3-250ENST00000636839 ARAP1Q96P48 1450 aa31.76■■■□□ 2.68
CLN3-250ENST00000636839 PPARGC1BQ86YN6 1023 aaKnown RBP31.72■■■□□ 2.67
CLN3-250ENST00000636839 VPS8Q8N3P4 1428 aa31.66■■■□□ 2.66
CLN3-250ENST00000636839 CEP170Q5SW79 1584 aa31.66■■■□□ 2.66
CLN3-250ENST00000636839 IQGAP2Q13576 1575 aa31.62■■■□□ 2.65
CLN3-250ENST00000636839 KIAA0586Q9BVV6 1533 aa31.61■■■□□ 2.65
CLN3-250ENST00000636839 FHOD3Q2V2M9 1422 aa31.6■■■□□ 2.65
CLN3-250ENST00000636839 NUP160Q12769 1436 aa31.59■■■□□ 2.65
CLN3-250ENST00000636839 CHD1O14646 1710 aa31.57■■■□□ 2.64
CLN3-250ENST00000636839 EFCAB5A4FU69 1503 aa31.53■■■□□ 2.64
CLN3-250ENST00000636839 SAMD9Q5K651 1589 aa31.51■■■□□ 2.63
CLN3-250ENST00000636839 TTBK1Q5TCY1 1321 aaPredicted RBP31.51■■■□□ 2.63
CLN3-250ENST00000636839 UGGT2Q9NYU1 1516 aa31.46■■■□□ 2.63
CLN3-250ENST00000636839 JPH4Q96JJ6 628 aa31.44■■■□□ 2.62
CLN3-250ENST00000636839 DISP1Q96F81 1524 aa31.4■■■□□ 2.62
CLN3-250ENST00000636839 ATP1B4Q9UN42 357 aaPredicted RBP31.36■■■□□ 2.61
CLN3-250ENST00000636839 APLP2Q06481 763 aa31.35■■■□□ 2.61
CLN3-250ENST00000636839 KIAA0556O60303 1618 aa31.31■■■□□ 2.6
CLN3-250ENST00000636839 PCF11O94913 1555 aaKnown RBP31.31■■■□□ 2.6
CLN3-250ENST00000636839 PCGF6Q9BYE7 350 aa31.3■■■□□ 2.6
CLN3-250ENST00000636839 FMN1Q68DA7 1419 aa31.29■■■□□ 2.6
CLN3-250ENST00000636839 KANK4Q5T7N3 995 aaPredicted RBP31.28■■■□□ 2.6
CLN3-250ENST00000636839 CASKIN1Q8WXD9 1431 aa31.24■■■□□ 2.59
CLN3-250ENST00000636839 TRIM26Q12899 539 aaPredicted RBP31.24■■■□□ 2.59
CLN3-250ENST00000636839 PRG4Q92954 1404 aaPredicted RBP31.23■■■□□ 2.59
CLN3-250ENST00000636839 CARMIL2Q6F5E8 1435 aa31.19■■■□□ 2.58
CLN3-250ENST00000636839 CLASP1Q7Z460 1538 aa31.19■■■□□ 2.58
CLN3-250ENST00000636839 FYCO1Q9BQS8 1478 aa31.19■■■□□ 2.58
CLN3-250ENST00000636839 SHROOM2Q13796 1616 aa31.14■■■□□ 2.58
CLN3-250ENST00000636839 ARID3CA6NKF2 412 aa31.13■■■□□ 2.57
CLN3-250ENST00000636839 ERCC6L2Q5T890 1561 aa31.13■■■□□ 2.57
CLN3-250ENST00000636839 TIAM1Q13009 1591 aa31.11■■■□□ 2.57
CLN3-250ENST00000636839 OSCARQ8IYS5 282 aa31.1■■■□□ 2.57
CLN3-250ENST00000636839 LRRIQ1Q96JM4 1722 aa31.07■■■□□ 2.56
CLN3-250ENST00000636839 PLB1Q6P1J6 1458 aa31.06■■■□□ 2.56
CLN3-250ENST00000636839 MAP3K1Q13233 1512 aa31.04■■■□□ 2.56
CLN3-250ENST00000636839 LRRC9Q6ZRR7 1453 aa31.01■■■□□ 2.55
CLN3-250ENST00000636839 PTPRGP23470 1445 aa31■■■□□ 2.55
CLN3-250ENST00000636839 CFAP43Q8NDM7 1665 aa31■■■□□ 2.55
CLN3-250ENST00000636839 HECW1Q76N89 1606 aa30.97■■■□□ 2.55
CLN3-250ENST00000636839 NUP153P49790 1475 aaKnown RBP30.97■■■□□ 2.55
CLN3-250ENST00000636839 RAPGEF6Q8TEU7 1601 aa30.97■■■□□ 2.55
CLN3-250ENST00000636839 CDK13Q14004 1512 aaKnown RBP30.96■■■□□ 2.55
CLN3-250ENST00000636839 EPRSP07814 1512 aaKnown RBP30.96■■■□□ 2.55
CLN3-250ENST00000636839 ABCA8O94911 1581 aa30.88■■■□□ 2.53
CLN3-250ENST00000636839 CCDC18Q5T9S5 1454 aa30.88■■■□□ 2.53
CLN3-250ENST00000636839 MAGI3Q5TCQ9 1506 aa30.87■■■□□ 2.53
CLN3-250ENST00000636839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.86■■■□□ 2.53
CLN3-250ENST00000636839 HNRNPUL2Q1KMD3 747 aaKnown RBP30.86■■■□□ 2.53
CLN3-250ENST00000636839 MTUS2Q5JR59 1369 aa30.86■■■□□ 2.53
CLN3-250ENST00000636839 PHLDB1Q86UU1 1377 aa30.8■■■□□ 2.52
CLN3-250ENST00000636839 UACAQ9BZF9 1416 aa30.79■■■□□ 2.52
CLN3-250ENST00000636839 ATP10BO94823 1461 aa30.76■■■□□ 2.51
CLN3-250ENST00000636839 EHBP1L1Q8N3D4 1523 aa30.71■■■□□ 2.51
CLN3-250ENST00000636839 NCOA2Q15596 1464 aa30.69■■■□□ 2.5
CLN3-250ENST00000636839 RRBP1Q9P2E9 1410 aaKnown RBP30.66■■■□□ 2.5
CLN3-250ENST00000636839 CDK11AQ9UQ88 783 aaPredicted RBP30.66■■■□□ 2.5
CLN3-250ENST00000636839 ABCC2Q92887 1545 aa30.66■■■□□ 2.5
CLN3-250ENST00000636839 CCNB3Q8WWL7 1395 aa30.63■■■□□ 2.49
CLN3-250ENST00000636839 SUPT6HQ7KZ85 1726 aaKnown RBP30.62■■■□□ 2.49
CLN3-250ENST00000636839 PLEKHD1A6NEE1 506 aa30.59■■■□□ 2.49
CLN3-250ENST00000636839 TROQ12816 1431 aaPredicted RBP30.59■■■□□ 2.49
CLN3-250ENST00000636839 ARHGEF11O15085 1522 aa30.58■■■□□ 2.49
CLN3-250ENST00000636839 UHRF1BP1LA0JNW5 1464 aa30.56■■■□□ 2.48
CLN3-250ENST00000636839 FAM50AQ14320 339 aaKnown RBP30.54■■■□□ 2.48
CLN3-250ENST00000636839 ITGAEP38570 1179 aa30.54■■■□□ 2.48
CLN3-250ENST00000636839 ADCY10Q96PN6 1610 aa30.54■■■□□ 2.48
CLN3-250ENST00000636839 MYOM3Q5VTT5 1437 aa30.52■■■□□ 2.48
CLN3-250ENST00000636839 KIF14Q15058 1648 aa30.52■■■□□ 2.48
CLN3-250ENST00000636839 FGD6Q6ZV73 1430 aa30.51■■■□□ 2.47
CLN3-250ENST00000636839 KDM5BQ9UGL1 1544 aa30.49■■■□□ 2.47
CLN3-250ENST00000636839 ZCCHC11Q5TAX3 1644 aaKnown RBP30.47■■■□□ 2.47
CLN3-250ENST00000636839 CYB5RLQ6IPT4 315 aa30.42■■■□□ 2.46
CLN3-250ENST00000636839 KCNH8Q96L42 1107 aa30.41■■■□□ 2.46
CLN3-250ENST00000636839 RIMBP3CA6NJZ7 1639 aa30.41■■■□□ 2.46
CLN3-250ENST00000636839 RIMBP3BA6NNM3 1639 aa30.41■■■□□ 2.46
CLN3-250ENST00000636839 RIMBP3Q9UFD9 1639 aa30.41■■■□□ 2.46
CLN3-250ENST00000636839 ABCC10Q5T3U5 1492 aa30.36■■■□□ 2.45
CLN3-250ENST00000636839 ZNF644Q9H582 1327 aaPredicted RBP30.36■■■□□ 2.45
CLN3-250ENST00000636839 GPATCH8Q9UKJ3 1502 aaKnown RBP30.36■■■□□ 2.45
CLN3-250ENST00000636839 PTPN23Q9H3S7 1636 aa30.35■■■□□ 2.45
CLN3-250ENST00000636839 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.31■■■□□ 2.44
CLN3-250ENST00000636839 MIA2Q96PC5 1412 aa30.31■■■□□ 2.44
CLN3-250ENST00000636839 CFDP1Q9UEE9 299 aaPredicted RBP30.3■■■□□ 2.44
CLN3-250ENST00000636839 ZNF777Q9ULD5 760 aaPredicted RBP30.28■■■□□ 2.44
CLN3-250ENST00000636839 TCOF1Q13428 1488 aaKnown RBP30.27■■■□□ 2.44
CLN3-250ENST00000636839 PTPRKQ15262 1439 aa30.27■■■□□ 2.44
CLN3-250ENST00000636839 NPM1P06748 294 aaKnown RBP eCLIP30.27■■■□□ 2.44
CLN3-250ENST00000636839 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.25■■■□□ 2.43
CLN3-250ENST00000636839 ASXL2Q76L83 1435 aa30.24■■■□□ 2.43
CLN3-250ENST00000636839 TTC37Q6PGP7 1564 aa30.24■■■□□ 2.43
CLN3-250ENST00000636839 CDC42BPAQ5VT25 1732 aa30.24■■■□□ 2.43
CLN3-250ENST00000636839 WDR7Q9Y4E6 1490 aa30.22■■■□□ 2.43
CLN3-250ENST00000636839 ITSN2Q9NZM3 1697 aa30.19■■■□□ 2.42
CLN3-250ENST00000636839 CHIC2Q9UKJ5 165 aa30.16■■■□□ 2.42
CLN3-250ENST00000636839 CAMSAP2Q08AD1 1489 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms