RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ARID3CA6NKF2 412 aa15.12■□□□□ 0.01
CLN3-244ENST00000636147 CHIC2Q9UKJ5 165 aa15.1■□□□□ 0.01
CLN3-244ENST00000636147 SALL2Q9Y467 1007 aaPredicted RBP15.1■□□□□ 0.01
CLN3-244ENST00000636147 ZBTB47Q9UFB7 747 aaPredicted RBP15.1■□□□□ 0.01
CLN3-244ENST00000636147 RTN4Q9NQC3 1192 aaKnown RBP15.09■□□□□ 0.01
CLN3-244ENST00000636147 MYT1LQ9UL68 1186 aa15.08■□□□□ 0
CLN3-244ENST00000636147 RAB3GAP2Q9H2M9 1393 aa15.08■□□□□ 0
CLN3-244ENST00000636147 RAPGEF2Q9Y4G8 1499 aa15.06■□□□□ 0
CLN3-244ENST00000636147 PPP4R2Q9NY27 417 aa15.06■□□□□ 0
CLN3-244ENST00000636147 CCER2I3L3R5 266 aa15.05■□□□□ -0
CLN3-244ENST00000636147 EIF5BO60841 1220 aaKnown RBP15.05■□□□□ -0
CLN3-244ENST00000636147 NOP58Q9Y2X3 529 aaKnown RBP15.02□□□□□ -0.01
CLN3-244ENST00000636147 NACADO15069 1562 aa15.01□□□□□ -0.01
CLN3-244ENST00000636147 RRP7BPQ9NSQ0 103 aa15□□□□□ -0.01
CLN3-244ENST00000636147 EIF4G2P78344 907 aaKnown RBP eCLIP14.99□□□□□ -0.011e-9■■■■□ 22.4
CLN3-244ENST00000636147 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
CLN3-244ENST00000636147 SETD5Q9C0A6 1442 aa14.96□□□□□ -0.01
CLN3-244ENST00000636147 LAS1LQ9Y4W2 734 aaKnown RBP14.95□□□□□ -0.02
CLN3-244ENST00000636147 MSH5O43196 834 aa14.94□□□□□ -0.02
CLN3-244ENST00000636147 TOP2AP11388 1531 aaKnown RBP14.93□□□□□ -0.02
CLN3-244ENST00000636147 TMC1Q8TDI8 760 aa14.92□□□□□ -0.02
CLN3-244ENST00000636147 MTUS2Q5JR59 1369 aa14.89□□□□□ -0.03
CLN3-244ENST00000636147 HSPA5P11021 654 aaKnown RBP14.89□□□□□ -0.03
CLN3-244ENST00000636147 FANCIQ9NVI1 1328 aa14.88□□□□□ -0.03
CLN3-244ENST00000636147 KIF27Q86VH2 1401 aa14.87□□□□□ -0.03
CLN3-244ENST00000636147 TIMELESSQ9UNS1 1208 aa14.87□□□□□ -0.03
CLN3-244ENST00000636147 BAZ1BQ9UIG0 1483 aaKnown RBP14.86□□□□□ -0.03
CLN3-244ENST00000636147 NEFMP07197 916 aa14.85□□□□□ -0.03
CLN3-244ENST00000636147 KIF21BO75037 1637 aa14.83□□□□□ -0.03
CLN3-244ENST00000636147 SMARCA2P51531 1590 aa14.83□□□□□ -0.03
CLN3-244ENST00000636147 FOXD1Q16676 465 aa14.82□□□□□ -0.04
CLN3-244ENST00000636147 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.82□□□□□ -0.04
CLN3-244ENST00000636147 ZNF777Q9ULD5 760 aaPredicted RBP14.8□□□□□ -0.04
CLN3-244ENST00000636147 ARXQ96QS3 562 aa14.79□□□□□ -0.04
CLN3-244ENST00000636147 KDM2AQ9Y2K7 1162 aa14.78□□□□□ -0.04
CLN3-244ENST00000636147 SLC4A1APQ9BWU0 796 aaKnown RBP14.77□□□□□ -0.05
CLN3-244ENST00000636147 PAK3O75914 559 aaPredicted RBP14.76□□□□□ -0.05
CLN3-244ENST00000636147 ERICH6BQ5W0A0 696 aa14.76□□□□□ -0.05
CLN3-244ENST00000636147 IPO9Q96P70 1041 aaKnown RBP14.74□□□□□ -0.05
CLN3-244ENST00000636147 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
CLN3-244ENST00000636147 ANO8Q9HCE9 1232 aaPredicted RBP14.72□□□□□ -0.05
CLN3-244ENST00000636147 CCDC184Q52MB2 194 aa14.72□□□□□ -0.05
CLN3-244ENST00000636147 ARAP1Q96P48 1450 aa14.72□□□□□ -0.05
CLN3-244ENST00000636147 CARMIL1Q5VZK9 1371 aa14.71□□□□□ -0.05
CLN3-244ENST00000636147 WDR97A6NE52 1622 aa14.7□□□□□ -0.06
CLN3-244ENST00000636147 L3MBTL2Q969R5 705 aa14.69□□□□□ -0.06
CLN3-244ENST00000636147 PRKRIP1Q9H875 184 aaPredicted RBP14.69□□□□□ -0.06
CLN3-244ENST00000636147 CUX2O14529 1486 aa14.69□□□□□ -0.06
CLN3-244ENST00000636147 PHLDB1Q86UU1 1377 aa14.68□□□□□ -0.06
CLN3-244ENST00000636147 RRBP1Q9P2E9 1410 aaKnown RBP14.68□□□□□ -0.06
CLN3-244ENST00000636147 SYNJ1O43426 1573 aa14.67□□□□□ -0.06
CLN3-244ENST00000636147 PPM1GO15355 546 aaPredicted RBP14.66□□□□□ -0.06
CLN3-244ENST00000636147 ARHGAP35Q9NRY4 1499 aa14.66□□□□□ -0.06
CLN3-244ENST00000636147 FHAD1B1AJZ9 1412 aa14.66□□□□□ -0.06
CLN3-244ENST00000636147 WASHC2AQ641Q2 1341 aa14.65□□□□□ -0.06
CLN3-244ENST00000636147 CANXP27824 592 aaKnown RBP14.64□□□□□ -0.07
CLN3-244ENST00000636147 IL27Q8NEV9 243 aa14.64□□□□□ -0.07
CLN3-244ENST00000636147 NUDCQ9Y266 331 aa14.64□□□□□ -0.07
CLN3-244ENST00000636147 RGS3P49796 1198 aa14.62□□□□□ -0.07
CLN3-244ENST00000636147 ZBED9Q6R2W3 1325 aa14.61□□□□□ -0.07
CLN3-244ENST00000636147 MPHOSPH9Q99550 1183 aa14.61□□□□□ -0.07
CLN3-244ENST00000636147 FHOD3Q2V2M9 1422 aa14.61□□□□□ -0.07
CLN3-244ENST00000636147 SLC4A3P48751 1232 aa14.6□□□□□ -0.07
CLN3-244ENST00000636147 DDRGK1Q96HY6 314 aa14.6□□□□□ -0.07
CLN3-244ENST00000636147 CARD11Q9BXL7 1154 aa14.59□□□□□ -0.07
CLN3-244ENST00000636147 EXOC6Q8TAG9 804 aa14.57□□□□□ -0.08
CLN3-244ENST00000636147 RGL3Q3MIN7 710 aa14.56□□□□□ -0.08
CLN3-244ENST00000636147 RCAN3Q9UKA8 241 aa14.56□□□□□ -0.08
CLN3-244ENST00000636147 PDE4AP27815 886 aa14.55□□□□□ -0.08
CLN3-244ENST00000636147 FBLN2P98095 1184 aa14.55□□□□□ -0.08
CLN3-244ENST00000636147 ATAD2BQ9ULI0 1458 aa14.54□□□□□ -0.08
CLN3-244ENST00000636147 TCERG1O14776 1098 aaKnown RBP14.54□□□□□ -0.08
CLN3-244ENST00000636147 CC2D1BQ5T0F9 858 aaKnown RBP14.54□□□□□ -0.08
CLN3-244ENST00000636147 CCDC18Q5T9S5 1454 aa14.53□□□□□ -0.08
CLN3-244ENST00000636147 PLIN1O60240 522 aa14.53□□□□□ -0.08
CLN3-244ENST00000636147 AKNAQ7Z591 1439 aa14.52□□□□□ -0.08
CLN3-244ENST00000636147 FMN1Q68DA7 1419 aa14.52□□□□□ -0.08
CLN3-244ENST00000636147 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLN3-244ENST00000636147 WDR43Q15061 677 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLN3-244ENST00000636147 LRRC9Q6ZRR7 1453 aa14.5□□□□□ -0.09
CLN3-244ENST00000636147 PRXQ9BXM0 1461 aa14.5□□□□□ -0.09
CLN3-244ENST00000636147 IGF1RP08069 1367 aa14.48□□□□□ -0.09
CLN3-244ENST00000636147 EIF4G1Q04637 1599 aaKnown RBP14.48□□□□□ -0.09
CLN3-244ENST00000636147 C11orf95C9JLR9 678 aaPredicted RBP14.48□□□□□ -0.09
CLN3-244ENST00000636147 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
CLN3-244ENST00000636147 KIF7Q2M1P5 1343 aa14.48□□□□□ -0.09
CLN3-244ENST00000636147 CCDC7Q96M83 1385 aa14.48□□□□□ -0.09
CLN3-244ENST00000636147 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.48□□□□□ -0.09
CLN3-244ENST00000636147 UPF2Q9HAU5 1272 aaKnown RBP14.46□□□□□ -0.09
CLN3-244ENST00000636147 BRPF3Q9ULD4 1205 aa14.46□□□□□ -0.09
CLN3-244ENST00000636147 DCAF11Q8TEB1 546 aa14.45□□□□□ -0.1
CLN3-244ENST00000636147 MAPKBP1O60336 1514 aa14.45□□□□□ -0.1
CLN3-244ENST00000636147 CNTLNQ9NXG0 1405 aa14.45□□□□□ -0.1
CLN3-244ENST00000636147 RRP1P56182 461 aaKnown RBP14.45□□□□□ -0.1
CLN3-244ENST00000636147 PKD2Q13563 968 aa14.44□□□□□ -0.1
CLN3-244ENST00000636147 CFDP1Q9UEE9 299 aaPredicted RBP14.43□□□□□ -0.1
CLN3-244ENST00000636147 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
CLN3-244ENST00000636147 GSE1Q14687 1217 aa14.43□□□□□ -0.1
CLN3-244ENST00000636147 SLKQ9H2G2 1235 aaPredicted RBP14.42□□□□□ -0.1
CLN3-244ENST00000636147 SKAP1Q86WV1 359 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms