RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
LINC00339-210ENST00000635675 PRXQ9BXM0 1461 aa16.28■□□□□ 0.2
LINC00339-210ENST00000635675 KIAA0586Q9BVV6 1533 aa16.28■□□□□ 0.2
LINC00339-210ENST00000635675 SHROOM2Q13796 1616 aa16.27■□□□□ 0.2
LINC00339-210ENST00000635675 JPH4Q96JJ6 628 aa16.27■□□□□ 0.19
LINC00339-210ENST00000635675 ARAP1Q96P48 1450 aa16.23■□□□□ 0.19
LINC00339-210ENST00000635675 FAM9AQ8IZU1 332 aaPredicted RBP16.23■□□□□ 0.19
LINC00339-210ENST00000635675 CYB5RLQ6IPT4 315 aa16.22■□□□□ 0.19
LINC00339-210ENST00000635675 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
LINC00339-210ENST00000635675 PRG4Q92954 1404 aaPredicted RBP16.21■□□□□ 0.19
LINC00339-210ENST00000635675 IQGAP2Q13576 1575 aa16.17■□□□□ 0.18
LINC00339-210ENST00000635675 CTTNBP2Q8WZ74 1663 aa16.12■□□□□ 0.17
LINC00339-210ENST00000635675 KIF21BO75037 1637 aa16.11■□□□□ 0.17
LINC00339-210ENST00000635675 UGGT2Q9NYU1 1516 aa16.11■□□□□ 0.17
LINC00339-210ENST00000635675 DISP1Q96F81 1524 aa16.08■□□□□ 0.17
LINC00339-210ENST00000635675 CARMIL2Q6F5E8 1435 aa16.08■□□□□ 0.17
LINC00339-210ENST00000635675 TNIKQ9UKE5 1360 aa16.04■□□□□ 0.16
LINC00339-210ENST00000635675 PTPRGP23470 1445 aa16.03■□□□□ 0.16
LINC00339-210ENST00000635675 GOLGA3Q08378 1498 aa16.02■□□□□ 0.15
LINC00339-210ENST00000635675 KIAA0556O60303 1618 aa16.01■□□□□ 0.15
LINC00339-210ENST00000635675 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
LINC00339-210ENST00000635675 UBTFP17480 764 aaKnown RBP15.99■□□□□ 0.15
LINC00339-210ENST00000635675 TTBK1Q5TCY1 1321 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-210ENST00000635675 ADCY10Q96PN6 1610 aa15.94■□□□□ 0.14
LINC00339-210ENST00000635675 SAMD9Q5K651 1589 aa15.94■□□□□ 0.14
LINC00339-210ENST00000635675 RANGAP1P46060 587 aaPredicted RBP15.93■□□□□ 0.14
LINC00339-210ENST00000635675 P3H3Q8IVL6 736 aa15.93■□□□□ 0.14
LINC00339-210ENST00000635675 UACAQ9BZF9 1416 aa15.92■□□□□ 0.14
LINC00339-210ENST00000635675 UHRF1BP1LA0JNW5 1464 aa15.91■□□□□ 0.14
LINC00339-210ENST00000635675 NPM1P06748 294 aaKnown RBP eCLIP15.89■□□□□ 0.13
LINC00339-210ENST00000635675 EFCAB5A4FU69 1503 aa15.87■□□□□ 0.13
LINC00339-210ENST00000635675 ABCC2Q92887 1545 aa15.87■□□□□ 0.13
LINC00339-210ENST00000635675 PLB1Q6P1J6 1458 aa15.87■□□□□ 0.13
LINC00339-210ENST00000635675 ABCA8O94911 1581 aa15.86■□□□□ 0.13
LINC00339-210ENST00000635675 TRHP20396 242 aaPredicted RBP15.85■□□□□ 0.13
LINC00339-210ENST00000635675 FHOD3Q2V2M9 1422 aa15.84■□□□□ 0.13
LINC00339-210ENST00000635675 MAPKBP1O60336 1514 aa15.84■□□□□ 0.13
LINC00339-210ENST00000635675 KDM5BQ9UGL1 1544 aa15.83■□□□□ 0.12
LINC00339-210ENST00000635675 ARHGAP35Q9NRY4 1499 aa15.82■□□□□ 0.12
LINC00339-210ENST00000635675 LOC105371045A0A1W2PR82 267 aa15.78■□□□□ 0.12
LINC00339-210ENST00000635675 ZCCHC11Q5TAX3 1644 aaKnown RBP15.77■□□□□ 0.12
LINC00339-210ENST00000635675 ASXL2Q76L83 1435 aa15.76■□□□□ 0.11
LINC00339-210ENST00000635675 RAPGEF6Q8TEU7 1601 aa15.76■□□□□ 0.11
LINC00339-210ENST00000635675 ABCC10Q5T3U5 1492 aa15.75■□□□□ 0.11
LINC00339-210ENST00000635675 CLIP1P30622 1438 aa15.75■□□□□ 0.11
LINC00339-210ENST00000635675 ATP10BO94823 1461 aa15.74■□□□□ 0.11
LINC00339-210ENST00000635675 FMN1Q68DA7 1419 aa15.74■□□□□ 0.11
LINC00339-210ENST00000635675 KIF13AQ9H1H9 1805 aa15.73■□□□□ 0.11
LINC00339-210ENST00000635675 NUP153P49790 1475 aaKnown RBP15.73■□□□□ 0.11
LINC00339-210ENST00000635675 ARID3CA6NKF2 412 aa15.72■□□□□ 0.11
LINC00339-210ENST00000635675 FAM69CQ0P6D2 419 aa15.72■□□□□ 0.11
LINC00339-210ENST00000635675 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
LINC00339-210ENST00000635675 CEP162Q5TB80 1403 aa15.69■□□□□ 0.1
LINC00339-210ENST00000635675 WDR7Q9Y4E6 1490 aa15.68■□□□□ 0.1
LINC00339-210ENST00000635675 EPRSP07814 1512 aaKnown RBP15.66■□□□□ 0.1
LINC00339-210ENST00000635675 GLI2P10070 1586 aa15.66■□□□□ 0.1
LINC00339-210ENST00000635675 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
LINC00339-210ENST00000635675 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
LINC00339-210ENST00000635675 CASKIN1Q8WXD9 1431 aa15.63■□□□□ 0.09
LINC00339-210ENST00000635675 HECW1Q76N89 1606 aa15.63■□□□□ 0.09
LINC00339-210ENST00000635675 KCNH8Q96L42 1107 aa15.63■□□□□ 0.09
LINC00339-210ENST00000635675 ATP1B4Q9UN42 357 aaPredicted RBP15.63■□□□□ 0.09
LINC00339-210ENST00000635675 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
LINC00339-210ENST00000635675 PLEKHD1A6NEE1 506 aa15.6■□□□□ 0.09
LINC00339-210ENST00000635675 PCF11O94913 1555 aaKnown RBP15.6■□□□□ 0.09
LINC00339-210ENST00000635675 MAP3K4Q9Y6R4 1608 aa15.58■□□□□ 0.09
LINC00339-210ENST00000635675 LRRIQ1Q96JM4 1722 aa15.58■□□□□ 0.08
LINC00339-210ENST00000635675 FYCO1Q9BQS8 1478 aa15.58■□□□□ 0.08
LINC00339-210ENST00000635675 TSPOAP1O95153 1857 aa15.58■□□□□ 0.08
LINC00339-210ENST00000635675 CDK11AQ9UQ88 783 aaPredicted RBP15.55■□□□□ 0.08
LINC00339-210ENST00000635675 PPRC1Q5VV67 1664 aaKnown RBP15.55■□□□□ 0.08
LINC00339-210ENST00000635675 CCDC18Q5T9S5 1454 aa15.55■□□□□ 0.08
LINC00339-210ENST00000635675 CFAP43Q8NDM7 1665 aa15.54■□□□□ 0.08
LINC00339-210ENST00000635675 CD109Q6YHK3 1445 aa15.54■□□□□ 0.08
LINC00339-210ENST00000635675 ABCA9Q8IUA7 1624 aa15.53■□□□□ 0.08
LINC00339-210ENST00000635675 MAGI3Q5TCQ9 1506 aa15.51■□□□□ 0.07
LINC00339-210ENST00000635675 TROQ12816 1431 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-210ENST00000635675 VPS8Q8N3P4 1428 aa15.5■□□□□ 0.07
LINC00339-210ENST00000635675 TEX14Q8IWB6 1497 aa15.49■□□□□ 0.07
LINC00339-210ENST00000635675 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.07
LINC00339-210ENST00000635675 TTC37Q6PGP7 1564 aa15.45■□□□□ 0.06
LINC00339-210ENST00000635675 KIF14Q15058 1648 aa15.44■□□□□ 0.06
LINC00339-210ENST00000635675 KDM6BO15054 1643 aa15.44■□□□□ 0.06
LINC00339-210ENST00000635675 COL17A1Q9UMD9 1497 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-210ENST00000635675 PLCH2O75038 1416 aa15.41■□□□□ 0.06
LINC00339-210ENST00000635675 PHLDB1Q86UU1 1377 aa15.41■□□□□ 0.06
LINC00339-210ENST00000635675 NEO1Q92859 1461 aa15.4■□□□□ 0.06
LINC00339-210ENST00000635675 MTUS2Q5JR59 1369 aa15.4■□□□□ 0.06
LINC00339-210ENST00000635675 ARAP3Q8WWN8 1544 aa15.39■□□□□ 0.05
LINC00339-210ENST00000635675 TIAM1Q13009 1591 aa15.38■□□□□ 0.05
LINC00339-210ENST00000635675 MAP3K1Q13233 1512 aa15.37■□□□□ 0.05
LINC00339-210ENST00000635675 MYO5CQ9NQX4 1742 aa15.37■□□□□ 0.05
LINC00339-210ENST00000635675 FANCAO15360 1455 aa15.37■□□□□ 0.05
LINC00339-210ENST00000635675 AKNAQ7Z591 1439 aa15.35■□□□□ 0.05
LINC00339-210ENST00000635675 EFCAB2Q5VUJ9 269 aa15.35■□□□□ 0.05
LINC00339-210ENST00000635675 EHBP1L1Q8N3D4 1523 aa15.35■□□□□ 0.05
LINC00339-210ENST00000635675 CFAP74Q9C0B2 1584 aa15.34■□□□□ 0.05
LINC00339-210ENST00000635675 LRRC9Q6ZRR7 1453 aa15.33■□□□□ 0.04
LINC00339-210ENST00000635675 KANK4Q5T7N3 995 aaPredicted RBP15.33■□□□□ 0.04
LINC00339-210ENST00000635675 CDC42BPBQ9Y5S2 1711 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms