RNA–Protein interactions for RNA: ENST00000633364.1

LIMS4-205, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 957 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-205ENST00000633364 SHROOM2Q13796 1616 aa26.43■■□□□ 1.82
LIMS4-205ENST00000633364 PRG4Q92954 1404 aaPredicted RBP26.4■■□□□ 1.82
LIMS4-205ENST00000633364 RUSC2Q8N2Y8 1516 aa26.37■■□□□ 1.81
LIMS4-205ENST00000633364 KIAA0586Q9BVV6 1533 aa26.34■■□□□ 1.81
LIMS4-205ENST00000633364 RAPGEF2Q9Y4G8 1499 aa26.22■■□□□ 1.79
LIMS4-205ENST00000633364 NPM1P06748 294 aaKnown RBP eCLIP26.16■■□□□ 1.78
LIMS4-205ENST00000633364 CARMIL2Q6F5E8 1435 aa26.14■■□□□ 1.78
LIMS4-205ENST00000633364 IQGAP2Q13576 1575 aa26.14■■□□□ 1.78
LIMS4-205ENST00000633364 TTBK1Q5TCY1 1321 aaPredicted RBP26.14■■□□□ 1.77
LIMS4-205ENST00000633364 PTPRGP23470 1445 aa26.07■■□□□ 1.76
LIMS4-205ENST00000633364 TNIKQ9UKE5 1360 aa26.04■■□□□ 1.76
LIMS4-205ENST00000633364 CSRNP3Q8WYN3 585 aa25.99■■□□□ 1.75
LIMS4-205ENST00000633364 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
LIMS4-205ENST00000633364 ADCY10Q96PN6 1610 aa25.98■■□□□ 1.75
LIMS4-205ENST00000633364 UGGT2Q9NYU1 1516 aa25.95■■□□□ 1.74
LIMS4-205ENST00000633364 DISP1Q96F81 1524 aa25.94■■□□□ 1.74
LIMS4-205ENST00000633364 CTTNBP2Q8WZ74 1663 aa25.94■■□□□ 1.74
LIMS4-205ENST00000633364 EEA1Q15075 1411 aa25.92■■□□□ 1.74
LIMS4-205ENST00000633364 FAM9AQ8IZU1 332 aaPredicted RBP25.91■■□□□ 1.74
LIMS4-205ENST00000633364 FAM69CQ0P6D2 419 aa25.89■■□□□ 1.74
LIMS4-205ENST00000633364 MAPKBP1O60336 1514 aa25.88■■□□□ 1.73
LIMS4-205ENST00000633364 KIAA0556O60303 1618 aa25.87■■□□□ 1.73
LIMS4-205ENST00000633364 GOLGA3Q08378 1498 aa25.86■■□□□ 1.73
LIMS4-205ENST00000633364 UACAQ9BZF9 1416 aa25.86■■□□□ 1.73
LIMS4-205ENST00000633364 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
LIMS4-205ENST00000633364 ABCC10Q5T3U5 1492 aa25.83■■□□□ 1.73
LIMS4-205ENST00000633364 KIF13AQ9H1H9 1805 aa25.83■■□□□ 1.73
LIMS4-205ENST00000633364 ABCC2Q92887 1545 aa25.83■■□□□ 1.72
LIMS4-205ENST00000633364 UHRF1BP1LA0JNW5 1464 aa25.8■■□□□ 1.72
LIMS4-205ENST00000633364 DIP2BQ9P265 1576 aa25.74■■□□□ 1.71
LIMS4-205ENST00000633364 P3H3Q8IVL6 736 aa25.73■■□□□ 1.71
LIMS4-205ENST00000633364 PLB1Q6P1J6 1458 aa25.72■■□□□ 1.71
LIMS4-205ENST00000633364 ASXL2Q76L83 1435 aa25.71■■□□□ 1.71
LIMS4-205ENST00000633364 RANGAP1P46060 587 aaPredicted RBP25.71■■□□□ 1.71
LIMS4-205ENST00000633364 KDM5BQ9UGL1 1544 aa25.68■■□□□ 1.7
LIMS4-205ENST00000633364 EHMT2Q96KQ7 1210 aa25.65■■□□□ 1.7
LIMS4-205ENST00000633364 ZCCHC11Q5TAX3 1644 aaKnown RBP25.63■■□□□ 1.69
LIMS4-205ENST00000633364 KIF21BO75037 1637 aa25.63■■□□□ 1.69
LIMS4-205ENST00000633364 TSPOAP1O95153 1857 aa25.62■■□□□ 1.69
LIMS4-205ENST00000633364 UBTFP17480 764 aaKnown RBP25.6■■□□□ 1.69
LIMS4-205ENST00000633364 ABCA8O94911 1581 aa25.59■■□□□ 1.69
LIMS4-205ENST00000633364 SAMD9Q5K651 1589 aa25.56■■□□□ 1.68
LIMS4-205ENST00000633364 ARID3CA6NKF2 412 aa25.55■■□□□ 1.68
LIMS4-205ENST00000633364 GLI2P10070 1586 aa25.55■■□□□ 1.68
LIMS4-205ENST00000633364 EPRSP07814 1512 aaKnown RBP25.53■■□□□ 1.68
LIMS4-205ENST00000633364 WDR7Q9Y4E6 1490 aa25.52■■□□□ 1.68
LIMS4-205ENST00000633364 KCNH8Q96L42 1107 aa25.51■■□□□ 1.67
LIMS4-205ENST00000633364 KDM6BO15054 1643 aa25.49■■□□□ 1.67
LIMS4-205ENST00000633364 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.49■■□□□ 1.67
LIMS4-205ENST00000633364 HNRNPUL2Q1KMD3 747 aaKnown RBP25.49■■□□□ 1.67
LIMS4-205ENST00000633364 FHOD3Q2V2M9 1422 aa25.48■■□□□ 1.67
LIMS4-205ENST00000633364 EFCAB5A4FU69 1503 aa25.44■■□□□ 1.66
LIMS4-205ENST00000633364 RAPGEF6Q8TEU7 1601 aa25.44■■□□□ 1.66
LIMS4-205ENST00000633364 AEBP2Q6ZN18 517 aaPredicted RBP25.43■■□□□ 1.66
LIMS4-205ENST00000633364 ATP10BO94823 1461 aa25.42■■□□□ 1.66
LIMS4-205ENST00000633364 MAP3K4Q9Y6R4 1608 aa25.41■■□□□ 1.66
LIMS4-205ENST00000633364 TEX14Q8IWB6 1497 aa25.41■■□□□ 1.66
LIMS4-205ENST00000633364 PPRC1Q5VV67 1664 aaKnown RBP25.38■■□□□ 1.65
LIMS4-205ENST00000633364 CD109Q6YHK3 1445 aa25.37■■□□□ 1.65
LIMS4-205ENST00000633364 CFAP43Q8NDM7 1665 aa25.32■■□□□ 1.64
LIMS4-205ENST00000633364 NUP153P49790 1475 aaKnown RBP25.32■■□□□ 1.64
LIMS4-205ENST00000633364 ATP1B4Q9UN42 357 aaPredicted RBP25.31■■□□□ 1.64
LIMS4-205ENST00000633364 PLEKHD1A6NEE1 506 aa25.29■■□□□ 1.64
LIMS4-205ENST00000633364 MAGI3Q5TCQ9 1506 aa25.27■■□□□ 1.64
LIMS4-205ENST00000633364 FMN1Q68DA7 1419 aa25.26■■□□□ 1.63
LIMS4-205ENST00000633364 ARHGAP35Q9NRY4 1499 aa25.25■■□□□ 1.63
LIMS4-205ENST00000633364 COL17A1Q9UMD9 1497 aaPredicted RBP25.21■■□□□ 1.63
LIMS4-205ENST00000633364 ABCA9Q8IUA7 1624 aa25.18■■□□□ 1.62
LIMS4-205ENST00000633364 HECW1Q76N89 1606 aa25.15■■□□□ 1.62
LIMS4-205ENST00000633364 CDK13Q14004 1512 aaKnown RBP25.14■■□□□ 1.62
LIMS4-205ENST00000633364 CDK11AQ9UQ88 783 aaPredicted RBP25.14■■□□□ 1.62
LIMS4-205ENST00000633364 PHLDB1Q86UU1 1377 aa25.1■■□□□ 1.61
LIMS4-205ENST00000633364 CLIP1P30622 1438 aa25.06■■□□□ 1.6
LIMS4-205ENST00000633364 ARAP3Q8WWN8 1544 aa25.06■■□□□ 1.6
LIMS4-205ENST00000633364 NEO1Q92859 1461 aa25.05■■□□□ 1.6
LIMS4-205ENST00000633364 KDM4FA0A1W2PPD8 638 aa25.04■■□□□ 1.6
LIMS4-205ENST00000633364 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.02■■□□□ 1.6
LIMS4-205ENST00000633364 RAPGEF3O95398 923 aa25■■□□□ 1.59
LIMS4-205ENST00000633364 CASKIN1Q8WXD9 1431 aa24.99■■□□□ 1.59
LIMS4-205ENST00000633364 TTC37Q6PGP7 1564 aa24.97■■□□□ 1.59
LIMS4-205ENST00000633364 FANCAO15360 1455 aa24.97■■□□□ 1.59
LIMS4-205ENST00000633364 CFAP74Q9C0B2 1584 aa24.96■■□□□ 1.59
LIMS4-205ENST00000633364 PCF11O94913 1555 aaKnown RBP24.95■■□□□ 1.58
LIMS4-205ENST00000633364 ADGRL1O94910 1474 aa24.95■■□□□ 1.58
LIMS4-205ENST00000633364 CCDC18Q5T9S5 1454 aa24.95■■□□□ 1.58
LIMS4-205ENST00000633364 AKNAQ7Z591 1439 aa24.95■■□□□ 1.58
LIMS4-205ENST00000633364 TROQ12816 1431 aaPredicted RBP24.94■■□□□ 1.58
LIMS4-205ENST00000633364 KIF14Q15058 1648 aa24.92■■□□□ 1.58
LIMS4-205ENST00000633364 DENND4BO75064 1496 aaPredicted RBP24.91■■□□□ 1.58
LIMS4-205ENST00000633364 PLCH2O75038 1416 aa24.91■■□□□ 1.58
LIMS4-205ENST00000633364 FYCO1Q9BQS8 1478 aa24.9■■□□□ 1.58
LIMS4-205ENST00000633364 LRRIQ1Q96JM4 1722 aa24.9■■□□□ 1.58
LIMS4-205ENST00000633364 EFCAB2Q5VUJ9 269 aa24.89■■□□□ 1.58
LIMS4-205ENST00000633364 MYO5CQ9NQX4 1742 aa24.86■■□□□ 1.57
LIMS4-205ENST00000633364 CEP162Q5TB80 1403 aa24.85■■□□□ 1.57
LIMS4-205ENST00000633364 LOC105371045A0A1W2PR82 267 aa24.82■■□□□ 1.56
LIMS4-205ENST00000633364 FRMPD1Q5SYB0 1578 aa24.82■■□□□ 1.56
LIMS4-205ENST00000633364 ARID4BQ4LE39 1312 aaPredicted RBP24.82■■□□□ 1.56
LIMS4-205ENST00000633364 SCAPERQ9BY12 1400 aa24.81■■□□□ 1.56
LIMS4-205ENST00000633364 ARHGAP5Q13017 1502 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms