RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SHROOM2Q13796 1616 aa33.9■■■■□ 3.02
PTCD3-220ENST00000627371 CSRNP3Q8WYN3 585 aa33.89■■■■□ 3.02
PTCD3-220ENST00000627371 KIAA0586Q9BVV6 1533 aa33.85■■■■□ 3.01
PTCD3-220ENST00000627371 FAM9AQ8IZU1 332 aaPredicted RBP33.79■■■■□ 3
PTCD3-220ENST00000627371 CTTNBP2Q8WZ74 1663 aa33.77■■■■□ 3
PTCD3-220ENST00000627371 IQGAP2Q13576 1575 aa33.74■■■□□ 2.99
PTCD3-220ENST00000627371 KIF21BO75037 1637 aa33.72■■■□□ 2.99
PTCD3-220ENST00000627371 ERCC6L2Q5T890 1561 aa33.72■■■□□ 2.99
PTCD3-220ENST00000627371 JPH4Q96JJ6 628 aa33.71■■■□□ 2.99
PTCD3-220ENST00000627371 ARAP1Q96P48 1450 aa33.7■■■□□ 2.99
PTCD3-220ENST00000627371 PRG4Q92954 1404 aaPredicted RBP33.66■■■□□ 2.98
PTCD3-220ENST00000627371 UGGT2Q9NYU1 1516 aa33.56■■■□□ 2.96
PTCD3-220ENST00000627371 CYB5RLQ6IPT4 315 aa33.54■■■□□ 2.96
PTCD3-220ENST00000627371 GOLGA3Q08378 1498 aa33.49■■■□□ 2.95
PTCD3-220ENST00000627371 CARMIL2Q6F5E8 1435 aa33.46■■■□□ 2.95
PTCD3-220ENST00000627371 DISP1Q96F81 1524 aa33.46■■■□□ 2.95
PTCD3-220ENST00000627371 KIAA0556O60303 1618 aa33.42■■■□□ 2.94
PTCD3-220ENST00000627371 TNIKQ9UKE5 1360 aa33.34■■■□□ 2.93
PTCD3-220ENST00000627371 EHMT2Q96KQ7 1210 aa33.31■■■□□ 2.92
PTCD3-220ENST00000627371 SAMD9Q5K651 1589 aa33.3■■■□□ 2.92
PTCD3-220ENST00000627371 UBTFP17480 764 aaKnown RBP33.29■■■□□ 2.92
PTCD3-220ENST00000627371 PTPRGP23470 1445 aa33.28■■■□□ 2.92
PTCD3-220ENST00000627371 ADCY10Q96PN6 1610 aa33.2■■■□□ 2.9
PTCD3-220ENST00000627371 EFCAB5A4FU69 1503 aa33.18■■■□□ 2.9
PTCD3-220ENST00000627371 TTBK1Q5TCY1 1321 aaPredicted RBP33.16■■■□□ 2.9
PTCD3-220ENST00000627371 RANGAP1P46060 587 aaPredicted RBP33.11■■■□□ 2.89
PTCD3-220ENST00000627371 UACAQ9BZF9 1416 aa33.09■■■□□ 2.89
PTCD3-220ENST00000627371 UHRF1BP1LA0JNW5 1464 aa33.08■■■□□ 2.89
PTCD3-220ENST00000627371 P3H3Q8IVL6 736 aa33.07■■■□□ 2.88
PTCD3-220ENST00000627371 ABCC2Q92887 1545 aa33.07■■■□□ 2.88
PTCD3-220ENST00000627371 ABCA8O94911 1581 aa33.04■■■□□ 2.88
PTCD3-220ENST00000627371 FHOD3Q2V2M9 1422 aa33.03■■■□□ 2.88
PTCD3-220ENST00000627371 PLB1Q6P1J6 1458 aa33.02■■■□□ 2.88
PTCD3-220ENST00000627371 ARHGAP35Q9NRY4 1499 aa33.01■■■□□ 2.88
PTCD3-220ENST00000627371 NPM1P06748 294 aaKnown RBP eCLIP32.95■■■□□ 2.87
PTCD3-220ENST00000627371 MAPKBP1O60336 1514 aa32.94■■■□□ 2.86
PTCD3-220ENST00000627371 RAPGEF6Q8TEU7 1601 aa32.92■■■□□ 2.86
PTCD3-220ENST00000627371 KDM5BQ9UGL1 1544 aa32.92■■■□□ 2.86
PTCD3-220ENST00000627371 ZCCHC11Q5TAX3 1644 aaKnown RBP32.9■■■□□ 2.86
PTCD3-220ENST00000627371 LOC105371045A0A1W2PR82 267 aa32.86■■■□□ 2.85
PTCD3-220ENST00000627371 CLIP1P30622 1438 aa32.85■■■□□ 2.85
PTCD3-220ENST00000627371 FMN1Q68DA7 1419 aa32.82■■■□□ 2.84
PTCD3-220ENST00000627371 CEP162Q5TB80 1403 aa32.78■■■□□ 2.84
PTCD3-220ENST00000627371 KIF13AQ9H1H9 1805 aa32.77■■■□□ 2.84
PTCD3-220ENST00000627371 NUP153P49790 1475 aaKnown RBP32.76■■■□□ 2.84
PTCD3-220ENST00000627371 TRHP20396 242 aaPredicted RBP32.76■■■□□ 2.83
PTCD3-220ENST00000627371 ASXL2Q76L83 1435 aa32.74■■■□□ 2.83
PTCD3-220ENST00000627371 DIP2BQ9P265 1576 aa32.72■■■□□ 2.83
PTCD3-220ENST00000627371 ABCC10Q5T3U5 1492 aa32.72■■■□□ 2.83
PTCD3-220ENST00000627371 ATP10BO94823 1461 aa32.71■■■□□ 2.83
PTCD3-220ENST00000627371 HECW1Q76N89 1606 aa32.69■■■□□ 2.82
PTCD3-220ENST00000627371 ARID3CA6NKF2 412 aa32.64■■■□□ 2.82
PTCD3-220ENST00000627371 PCF11O94913 1555 aaKnown RBP32.64■■■□□ 2.82
PTCD3-220ENST00000627371 WDR7Q9Y4E6 1490 aa32.64■■■□□ 2.82
PTCD3-220ENST00000627371 LRRIQ1Q96JM4 1722 aa32.6■■■□□ 2.81
PTCD3-220ENST00000627371 CASKIN1Q8WXD9 1431 aa32.59■■■□□ 2.81
PTCD3-220ENST00000627371 GLI2P10070 1586 aa32.58■■■□□ 2.81
PTCD3-220ENST00000627371 EPRSP07814 1512 aaKnown RBP32.57■■■□□ 2.8
PTCD3-220ENST00000627371 FAM69CQ0P6D2 419 aa32.56■■■□□ 2.8
PTCD3-220ENST00000627371 CDK13Q14004 1512 aaKnown RBP32.56■■■□□ 2.8
PTCD3-220ENST00000627371 FYCO1Q9BQS8 1478 aa32.55■■■□□ 2.8
PTCD3-220ENST00000627371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.52■■■□□ 2.8
PTCD3-220ENST00000627371 HNRNPUL2Q1KMD3 747 aaKnown RBP32.52■■■□□ 2.8
PTCD3-220ENST00000627371 ATP1B4Q9UN42 357 aaPredicted RBP32.51■■■□□ 2.79
PTCD3-220ENST00000627371 MAP3K4Q9Y6R4 1608 aa32.47■■■□□ 2.79
PTCD3-220ENST00000627371 CCDC18Q5T9S5 1454 aa32.47■■■□□ 2.79
PTCD3-220ENST00000627371 TSPOAP1O95153 1857 aa32.46■■■□□ 2.79
PTCD3-220ENST00000627371 CFAP43Q8NDM7 1665 aa32.43■■■□□ 2.78
PTCD3-220ENST00000627371 PLEKHD1A6NEE1 506 aa32.4■■■□□ 2.78
PTCD3-220ENST00000627371 KCNH8Q96L42 1107 aa32.4■■■□□ 2.78
PTCD3-220ENST00000627371 PPRC1Q5VV67 1664 aaKnown RBP32.39■■■□□ 2.78
PTCD3-220ENST00000627371 VPS8Q8N3P4 1428 aa32.38■■■□□ 2.77
PTCD3-220ENST00000627371 ABCA9Q8IUA7 1624 aa32.37■■■□□ 2.77
PTCD3-220ENST00000627371 CDK11AQ9UQ88 783 aaPredicted RBP32.33■■■□□ 2.77
PTCD3-220ENST00000627371 TROQ12816 1431 aaPredicted RBP32.29■■■□□ 2.76
PTCD3-220ENST00000627371 CD109Q6YHK3 1445 aa32.28■■■□□ 2.76
PTCD3-220ENST00000627371 KIF14Q15058 1648 aa32.26■■■□□ 2.75
PTCD3-220ENST00000627371 MAGI3Q5TCQ9 1506 aa32.26■■■□□ 2.75
PTCD3-220ENST00000627371 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.26■■■□□ 2.758e-6■□□□□ 8.1
PTCD3-220ENST00000627371 TEX14Q8IWB6 1497 aa32.24■■■□□ 2.75
PTCD3-220ENST00000627371 TTC37Q6PGP7 1564 aa32.24■■■□□ 2.75
PTCD3-220ENST00000627371 TIAM1Q13009 1591 aa32.17■■■□□ 2.74
PTCD3-220ENST00000627371 MYO5CQ9NQX4 1742 aa32.14■■■□□ 2.74
PTCD3-220ENST00000627371 KDM6BO15054 1643 aa32.13■■■□□ 2.73
PTCD3-220ENST00000627371 EHBP1L1Q8N3D4 1523 aa32.12■■■□□ 2.73
PTCD3-220ENST00000627371 MAP3K1Q13233 1512 aa32.1■■■□□ 2.73
PTCD3-220ENST00000627371 MTUS2Q5JR59 1369 aa32.09■■■□□ 2.73
PTCD3-220ENST00000627371 CFAP74Q9C0B2 1584 aa32.06■■■□□ 2.72
PTCD3-220ENST00000627371 ARAP3Q8WWN8 1544 aa32.05■■■□□ 2.72
PTCD3-220ENST00000627371 NEO1Q92859 1461 aa32.03■■■□□ 2.72
PTCD3-220ENST00000627371 PLCH2O75038 1416 aa32.03■■■□□ 2.72
PTCD3-220ENST00000627371 CDC42BPAQ5VT25 1732 aa32.02■■■□□ 2.72
PTCD3-220ENST00000627371 PREX2Q70Z35 1606 aa32.01■■■□□ 2.72
PTCD3-220ENST00000627371 CDC42BPBQ9Y5S2 1711 aa32■■■□□ 2.71
PTCD3-220ENST00000627371 FANCAO15360 1455 aa32■■■□□ 2.71
PTCD3-220ENST00000627371 LRRC9Q6ZRR7 1453 aa31.99■■■□□ 2.71
PTCD3-220ENST00000627371 PHLDB1Q86UU1 1377 aa31.99■■■□□ 2.71
PTCD3-220ENST00000627371 SUPT6HQ7KZ85 1726 aaKnown RBP31.99■■■□□ 2.71
PTCD3-220ENST00000627371 COL17A1Q9UMD9 1497 aaPredicted RBP31.97■■■□□ 2.71
PTCD3-220ENST00000627371 ARHGAP5Q13017 1502 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms