RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 KIAA0586Q9BVV6 1533 aa24.81■■□□□ 1.56
PNKP-221ENST00000627317 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
PNKP-221ENST00000627317 PRG4Q92954 1404 aaPredicted RBP24.79■■□□□ 1.56
PNKP-221ENST00000627317 JPH4Q96JJ6 628 aa24.77■■□□□ 1.56
PNKP-221ENST00000627317 RAPGEF2Q9Y4G8 1499 aa24.69■■□□□ 1.54
PNKP-221ENST00000627317 IQGAP2Q13576 1575 aa24.63■■□□□ 1.53
PNKP-221ENST00000627317 PRXQ9BXM0 1461 aa24.62■■□□□ 1.53
PNKP-221ENST00000627317 UGGT2Q9NYU1 1516 aa24.53■■□□□ 1.52
PNKP-221ENST00000627317 DISP1Q96F81 1524 aa24.52■■□□□ 1.52
PNKP-221ENST00000627317 TRHP20396 242 aaPredicted RBP24.51■■□□□ 1.51
PNKP-221ENST00000627317 EEA1Q15075 1411 aa24.51■■□□□ 1.51
PNKP-221ENST00000627317 ADCY10Q96PN6 1610 aa24.5■■□□□ 1.51
PNKP-221ENST00000627317 CARMIL2Q6F5E8 1435 aa24.48■■□□□ 1.51
PNKP-221ENST00000627317 TNIKQ9UKE5 1360 aa24.46■■□□□ 1.51
PNKP-221ENST00000627317 PTPRGP23470 1445 aa24.44■■□□□ 1.5
PNKP-221ENST00000627317 CTTNBP2Q8WZ74 1663 aa24.44■■□□□ 1.5
PNKP-221ENST00000627317 KIAA0556O60303 1618 aa24.42■■□□□ 1.5
PNKP-221ENST00000627317 FAM9AQ8IZU1 332 aaPredicted RBP24.41■■□□□ 1.5
PNKP-221ENST00000627317 MAPKBP1O60336 1514 aa24.4■■□□□ 1.5
PNKP-221ENST00000627317 CSRNP3Q8WYN3 585 aa24.4■■□□□ 1.5
PNKP-221ENST00000627317 UHRF1BP1LA0JNW5 1464 aa24.35■■□□□ 1.49
PNKP-221ENST00000627317 ABCC2Q92887 1545 aa24.32■■□□□ 1.48
PNKP-221ENST00000627317 UACAQ9BZF9 1416 aa24.3■■□□□ 1.48
PNKP-221ENST00000627317 ABCC10Q5T3U5 1492 aa24.3■■□□□ 1.48
PNKP-221ENST00000627317 KIF13AQ9H1H9 1805 aa24.29■■□□□ 1.48
PNKP-221ENST00000627317 GOLGA3Q08378 1498 aa24.29■■□□□ 1.48
PNKP-221ENST00000627317 DIP2BQ9P265 1576 aa24.26■■□□□ 1.47
PNKP-221ENST00000627317 NPM1P06748 294 aaKnown RBP eCLIP24.25■■□□□ 1.47
PNKP-221ENST00000627317 TTBK1Q5TCY1 1321 aaPredicted RBP24.25■■□□□ 1.47
PNKP-221ENST00000627317 KIF21BO75037 1637 aa24.24■■□□□ 1.47
PNKP-221ENST00000627317 KDM5BQ9UGL1 1544 aa24.23■■□□□ 1.47
PNKP-221ENST00000627317 SAMD9Q5K651 1589 aa24.2■■□□□ 1.47
PNKP-221ENST00000627317 PLB1Q6P1J6 1458 aa24.19■■□□□ 1.46
PNKP-221ENST00000627317 ABCA8O94911 1581 aa24.19■■□□□ 1.46
PNKP-221ENST00000627317 ASXL2Q76L83 1435 aa24.17■■□□□ 1.46
PNKP-221ENST00000627317 FAM69CQ0P6D2 419 aa24.15■■□□□ 1.46
PNKP-221ENST00000627317 ZCCHC11Q5TAX3 1644 aaKnown RBP24.13■■□□□ 1.45
PNKP-221ENST00000627317 GLI2P10070 1586 aa24.09■■□□□ 1.45
PNKP-221ENST00000627317 EHMT2Q96KQ7 1210 aa24.08■■□□□ 1.45
PNKP-221ENST00000627317 EPRSP07814 1512 aaKnown RBP24.05■■□□□ 1.44
PNKP-221ENST00000627317 WDR7Q9Y4E6 1490 aa24.02■■□□□ 1.44
PNKP-221ENST00000627317 P3H3Q8IVL6 736 aa24.02■■□□□ 1.44
PNKP-221ENST00000627317 EFCAB5A4FU69 1503 aa24.01■■□□□ 1.43
PNKP-221ENST00000627317 UBTFP17480 764 aaKnown RBP24.01■■□□□ 1.43
PNKP-221ENST00000627317 FHOD3Q2V2M9 1422 aa23.99■■□□□ 1.43
PNKP-221ENST00000627317 PPRC1Q5VV67 1664 aaKnown RBP23.98■■□□□ 1.43
PNKP-221ENST00000627317 MAP3K4Q9Y6R4 1608 aa23.96■■□□□ 1.43
PNKP-221ENST00000627317 RAPGEF6Q8TEU7 1601 aa23.95■■□□□ 1.43
PNKP-221ENST00000627317 ATP10BO94823 1461 aa23.95■■□□□ 1.42
PNKP-221ENST00000627317 NUP153P49790 1475 aaKnown RBP23.93■■□□□ 1.42
PNKP-221ENST00000627317 TSPOAP1O95153 1857 aa23.9■■□□□ 1.42
PNKP-221ENST00000627317 RANGAP1P46060 587 aaPredicted RBP23.89■■□□□ 1.41
PNKP-221ENST00000627317 ARHGAP35Q9NRY4 1499 aa23.87■■□□□ 1.41
PNKP-221ENST00000627317 KDM6BO15054 1643 aa23.87■■□□□ 1.41
PNKP-221ENST00000627317 ARID3CA6NKF2 412 aa23.82■■□□□ 1.4
PNKP-221ENST00000627317 TEX14Q8IWB6 1497 aa23.81■■□□□ 1.4
PNKP-221ENST00000627317 MAGI3Q5TCQ9 1506 aa23.8■■□□□ 1.4
PNKP-221ENST00000627317 CFAP43Q8NDM7 1665 aa23.8■■□□□ 1.4
PNKP-221ENST00000627317 COL17A1Q9UMD9 1497 aaPredicted RBP23.79■■□□□ 1.4
PNKP-221ENST00000627317 LOC105371045A0A1W2PR82 267 aa23.78■■□□□ 1.4
PNKP-221ENST00000627317 CD109Q6YHK3 1445 aa23.77■■□□□ 1.4
PNKP-221ENST00000627317 ABCA9Q8IUA7 1624 aa23.76■■□□□ 1.39
PNKP-221ENST00000627317 FMN1Q68DA7 1419 aa23.76■■□□□ 1.39
PNKP-221ENST00000627317 KCNH8Q96L42 1107 aa23.75■■□□□ 1.39
PNKP-221ENST00000627317 CDK13Q14004 1512 aaKnown RBP23.7■■□□□ 1.38
PNKP-221ENST00000627317 CLIP1P30622 1438 aa23.68■■□□□ 1.38
PNKP-221ENST00000627317 HECW1Q76N89 1606 aa23.68■■□□□ 1.38
PNKP-221ENST00000627317 CEP162Q5TB80 1403 aa23.66■■□□□ 1.38
PNKP-221ENST00000627317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.63■■□□□ 1.37
PNKP-221ENST00000627317 HNRNPUL2Q1KMD3 747 aaKnown RBP23.63■■□□□ 1.37
PNKP-221ENST00000627317 ARAP3Q8WWN8 1544 aa23.61■■□□□ 1.37
PNKP-221ENST00000627317 PLEKHD1A6NEE1 506 aa23.6■■□□□ 1.37
PNKP-221ENST00000627317 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.59■■□□□ 1.37
PNKP-221ENST00000627317 PCF11O94913 1555 aaKnown RBP23.59■■□□□ 1.37
PNKP-221ENST00000627317 CASKIN1Q8WXD9 1431 aa23.59■■□□□ 1.37
PNKP-221ENST00000627317 LRRIQ1Q96JM4 1722 aa23.58■■□□□ 1.37
PNKP-221ENST00000627317 TTC37Q6PGP7 1564 aa23.57■■□□□ 1.36
PNKP-221ENST00000627317 NEO1Q92859 1461 aa23.57■■□□□ 1.36
PNKP-221ENST00000627317 PHLDB1Q86UU1 1377 aa23.55■■□□□ 1.36
PNKP-221ENST00000627317 FYCO1Q9BQS8 1478 aa23.52■■□□□ 1.36
PNKP-221ENST00000627317 TROQ12816 1431 aaPredicted RBP23.5■■□□□ 1.35
PNKP-221ENST00000627317 CCDC18Q5T9S5 1454 aa23.49■■□□□ 1.35
PNKP-221ENST00000627317 FRMPD1Q5SYB0 1578 aa23.48■■□□□ 1.35
PNKP-221ENST00000627317 KIF14Q15058 1648 aa23.48■■□□□ 1.35
PNKP-221ENST00000627317 ATP1B4Q9UN42 357 aaPredicted RBP23.47■■□□□ 1.35
PNKP-221ENST00000627317 FANCAO15360 1455 aa23.47■■□□□ 1.35
PNKP-221ENST00000627317 KDM4FA0A1W2PPD8 638 aa23.46■■□□□ 1.35
PNKP-221ENST00000627317 CFAP74Q9C0B2 1584 aa23.44■■□□□ 1.34
PNKP-221ENST00000627317 PLCH2O75038 1416 aa23.44■■□□□ 1.34
PNKP-221ENST00000627317 CDK11AQ9UQ88 783 aaPredicted RBP23.43■■□□□ 1.34
PNKP-221ENST00000627317 AKNAQ7Z591 1439 aa23.42■■□□□ 1.34
PNKP-221ENST00000627317 AEBP2Q6ZN18 517 aaPredicted RBP23.4■■□□□ 1.34
PNKP-221ENST00000627317 ADGRL1O94910 1474 aa23.39■■□□□ 1.34
PNKP-221ENST00000627317 RAPGEF3O95398 923 aa23.39■■□□□ 1.33
PNKP-221ENST00000627317 RICTORQ6R327 1708 aa23.37■■□□□ 1.33
PNKP-221ENST00000627317 DENND4BO75064 1496 aaPredicted RBP23.36■■□□□ 1.33
PNKP-221ENST00000627317 MYO5CQ9NQX4 1742 aa23.36■■□□□ 1.33
PNKP-221ENST00000627317 VPS8Q8N3P4 1428 aa23.35■■□□□ 1.33
PNKP-221ENST00000627317 ZMYM4Q5VZL5 1548 aa23.34■■□□□ 1.33
PNKP-221ENST00000627317 ARHGEF40Q8TER5 1519 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms