RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 CLIP1P30622 1438 aa27.34■■□□□ 1.97
PCF11-207ENST00000624931 CTTNBP2Q8WZ74 1663 aa27.28■■□□□ 1.96
PCF11-207ENST00000624931 MAGI1Q96QZ7 1491 aaPredicted RBP27.24■■□□□ 1.95
PCF11-207ENST00000624931 GRIN2AQ12879 1464 aa27.17■■□□□ 1.94
PCF11-207ENST00000624931 SYNJ2O15056 1496 aa27.16■■□□□ 1.94
PCF11-207ENST00000624931 ARAP1Q96P48 1450 aa27.16■■□□□ 1.94
PCF11-207ENST00000624931 ARHGAP35Q9NRY4 1499 aa27.15■■□□□ 1.94
PCF11-207ENST00000624931 FBLN2P98095 1184 aa27.09■■□□□ 1.93
PCF11-207ENST00000624931 CHMP7Q8WUX9 453 aaPredicted RBP27.07■■□□□ 1.92
PCF11-207ENST00000624931 CEP170Q5SW79 1584 aa27.05■■□□□ 1.92
PCF11-207ENST00000624931 VPS8Q8N3P4 1428 aa27.05■■□□□ 1.92
PCF11-207ENST00000624931 IQGAP2Q13576 1575 aa27.04■■□□□ 1.92
PCF11-207ENST00000624931 CHD1O14646 1710 aa27.03■■□□□ 1.92
PCF11-207ENST00000624931 P3H3Q8IVL6 736 aa27■■□□□ 1.91
PCF11-207ENST00000624931 PELP1Q8IZL8 1130 aaKnown RBP26.99■■□□□ 1.91
PCF11-207ENST00000624931 EFCAB5A4FU69 1503 aa26.98■■□□□ 1.91
PCF11-207ENST00000624931 SAMD9Q5K651 1589 aa26.97■■□□□ 1.91
PCF11-207ENST00000624931 FHOD3Q2V2M9 1422 aa26.97■■□□□ 1.91
PCF11-207ENST00000624931 NUP160Q12769 1436 aa26.96■■□□□ 1.91
PCF11-207ENST00000624931 KIAA0586Q9BVV6 1533 aa26.96■■□□□ 1.91
PCF11-207ENST00000624931 UGGT2Q9NYU1 1516 aa26.88■■□□□ 1.89
PCF11-207ENST00000624931 TTBK1Q5TCY1 1321 aaPredicted RBP26.84■■□□□ 1.89
PCF11-207ENST00000624931 PCF11O94913 1555 aaKnown RBP26.83■■□□□ 1.89
PCF11-207ENST00000624931 DISP1Q96F81 1524 aa26.79■■□□□ 1.88
PCF11-207ENST00000624931 KIAA0556O60303 1618 aa26.79■■□□□ 1.88
PCF11-207ENST00000624931 JPH4Q96JJ6 628 aa26.7■■□□□ 1.87
PCF11-207ENST00000624931 FMN1Q68DA7 1419 aa26.7■■□□□ 1.87
PCF11-207ENST00000624931 APLP2Q06481 763 aa26.68■■□□□ 1.86
PCF11-207ENST00000624931 CASKIN1Q8WXD9 1431 aa26.68■■□□□ 1.86
PCF11-207ENST00000624931 FYCO1Q9BQS8 1478 aa26.67■■□□□ 1.86
PCF11-207ENST00000624931 CLASP1Q7Z460 1538 aa26.67■■□□□ 1.86
PCF11-207ENST00000624931 ATP1B4Q9UN42 357 aaPredicted RBP26.65■■□□□ 1.86
PCF11-207ENST00000624931 SHROOM2Q13796 1616 aa26.64■■□□□ 1.85
PCF11-207ENST00000624931 TIAM1Q13009 1591 aa26.63■■□□□ 1.85
PCF11-207ENST00000624931 LRRIQ1Q96JM4 1722 aa26.63■■□□□ 1.85
PCF11-207ENST00000624931 CFAP43Q8NDM7 1665 aa26.62■■□□□ 1.85
PCF11-207ENST00000624931 KANK4Q5T7N3 995 aaPredicted RBP26.62■■□□□ 1.85
PCF11-207ENST00000624931 PRG4Q92954 1404 aaPredicted RBP26.61■■□□□ 1.85
PCF11-207ENST00000624931 CARMIL2Q6F5E8 1435 aa26.59■■□□□ 1.85
PCF11-207ENST00000624931 ERCC6L2Q5T890 1561 aa26.57■■□□□ 1.84
PCF11-207ENST00000624931 CCER1Q8TC90 406 aaPredicted RBP26.55■■□□□ 1.84
PCF11-207ENST00000624931 MAP3K1Q13233 1512 aa26.54■■□□□ 1.84
PCF11-207ENST00000624931 HECW1Q76N89 1606 aa26.53■■□□□ 1.84
PCF11-207ENST00000624931 SCAF1Q9H7N4 1312 aaKnown RBP26.52■■□□□ 1.84
PCF11-207ENST00000624931 RAPGEF6Q8TEU7 1601 aa26.5■■□□□ 1.83
PCF11-207ENST00000624931 PLB1Q6P1J6 1458 aa26.48■■□□□ 1.83
PCF11-207ENST00000624931 LRRC9Q6ZRR7 1453 aa26.48■■□□□ 1.83
PCF11-207ENST00000624931 ARID3CA6NKF2 412 aa26.47■■□□□ 1.83
PCF11-207ENST00000624931 CDK13Q14004 1512 aaKnown RBP26.45■■□□□ 1.83
PCF11-207ENST00000624931 NUP153P49790 1475 aaKnown RBP26.43■■□□□ 1.82
PCF11-207ENST00000624931 EPRSP07814 1512 aaKnown RBP26.42■■□□□ 1.82
PCF11-207ENST00000624931 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.41■■□□□ 1.82
PCF11-207ENST00000624931 CCDC18Q5T9S5 1454 aa26.4■■□□□ 1.82
PCF11-207ENST00000624931 ABCA8O94911 1581 aa26.4■■□□□ 1.82
PCF11-207ENST00000624931 PTPRGP23470 1445 aa26.39■■□□□ 1.81
PCF11-207ENST00000624931 MAGI3Q5TCQ9 1506 aa26.39■■□□□ 1.81
PCF11-207ENST00000624931 OSCARQ8IYS5 282 aa26.38■■□□□ 1.81
PCF11-207ENST00000624931 ACIN1Q9UKV3 1341 aaKnown RBP26.34■■□□□ 1.81
PCF11-207ENST00000624931 MTUS2Q5JR59 1369 aa26.31■■□□□ 1.8
PCF11-207ENST00000624931 CENPBP07199 599 aaPredicted RBP26.3■■□□□ 1.8
PCF11-207ENST00000624931 EHBP1L1Q8N3D4 1523 aa26.29■■□□□ 1.8
PCF11-207ENST00000624931 PHLDB1Q86UU1 1377 aa26.27■■□□□ 1.8
PCF11-207ENST00000624931 DIEXFQ68CQ4 756 aaKnown RBP26.26■■□□□ 1.79
PCF11-207ENST00000624931 UACAQ9BZF9 1416 aa26.24■■□□□ 1.79
PCF11-207ENST00000624931 HNRNPUL2Q1KMD3 747 aaKnown RBP26.23■■□□□ 1.79
PCF11-207ENST00000624931 SUPT6HQ7KZ85 1726 aaKnown RBP26.22■■□□□ 1.79
PCF11-207ENST00000624931 ATP10BO94823 1461 aa26.21■■□□□ 1.79
PCF11-207ENST00000624931 NCOA2Q15596 1464 aa26.2■■□□□ 1.79
PCF11-207ENST00000624931 ABCC2Q92887 1545 aa26.2■■□□□ 1.78
PCF11-207ENST00000624931 RRBP1Q9P2E9 1410 aaKnown RBP26.19■■□□□ 1.78
PCF11-207ENST00000624931 ARHGEF11O15085 1522 aa26.15■■□□□ 1.78
PCF11-207ENST00000624931 CCNB3Q8WWL7 1395 aa26.13■■□□□ 1.77
PCF11-207ENST00000624931 TROQ12816 1431 aaPredicted RBP26.11■■□□□ 1.77
PCF11-207ENST00000624931 KIF14Q15058 1648 aa26.1■■□□□ 1.77
PCF11-207ENST00000624931 ADCY10Q96PN6 1610 aa26.1■■□□□ 1.77
PCF11-207ENST00000624931 NEUROD1Q13562 356 aa26.09■■□□□ 1.77
PCF11-207ENST00000624931 UHRF1BP1LA0JNW5 1464 aa26.09■■□□□ 1.77
PCF11-207ENST00000624931 ZNF316A6NFI3 1004 aaPredicted RBP26.07■■□□□ 1.76
PCF11-207ENST00000624931 CDK11AQ9UQ88 783 aaPredicted RBP26.07■■□□□ 1.76
PCF11-207ENST00000624931 ZCCHC11Q5TAX3 1644 aaKnown RBP26.07■■□□□ 1.76
PCF11-207ENST00000624931 MYOM3Q5VTT5 1437 aa26.06■■□□□ 1.76
PCF11-207ENST00000624931 FGD6Q6ZV73 1430 aa26.06■■□□□ 1.76
PCF11-207ENST00000624931 KDM5BQ9UGL1 1544 aa26■■□□□ 1.75
PCF11-207ENST00000624931 FAM50AQ14320 339 aaKnown RBP26■■□□□ 1.75
PCF11-207ENST00000624931 PLEKHD1A6NEE1 506 aa26■■□□□ 1.75
PCF11-207ENST00000624931 ITGAEP38570 1179 aa25.98■■□□□ 1.75
PCF11-207ENST00000624931 RIMBP3CA6NJZ7 1639 aa25.97■■□□□ 1.75
PCF11-207ENST00000624931 RIMBP3BA6NNM3 1639 aa25.97■■□□□ 1.75
PCF11-207ENST00000624931 PTPN23Q9H3S7 1636 aa25.97■■□□□ 1.75
PCF11-207ENST00000624931 RIMBP3Q9UFD9 1639 aa25.97■■□□□ 1.75
PCF11-207ENST00000624931 ABCC10Q5T3U5 1492 aa25.93■■□□□ 1.74
PCF11-207ENST00000624931 GTF3C3Q9Y5Q9 886 aa25.91■■□□□ 1.74
PCF11-207ENST00000624931 MYT1Q01538 1121 aa25.9■■□□□ 1.74
PCF11-207ENST00000624931 GPATCH8Q9UKJ3 1502 aaKnown RBP25.89■■□□□ 1.73
PCF11-207ENST00000624931 ITSN2Q9NZM3 1697 aa25.89■■□□□ 1.73
PCF11-207ENST00000624931 CDC42BPAQ5VT25 1732 aa25.88■■□□□ 1.73
PCF11-207ENST00000624931 TCOF1Q13428 1488 aaKnown RBP25.88■■□□□ 1.73
PCF11-207ENST00000624931 TTC37Q6PGP7 1564 aa25.87■■□□□ 1.73
PCF11-207ENST00000624931 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.87■■□□□ 1.731e-25■■□□□ 13.2
PCF11-207ENST00000624931 MIA2Q96PC5 1412 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms