RNA–Protein interactions for RNA: ENST00000623364.3

CDKL5-204, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 3

Gene CDKL5, Length 483 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-204ENST00000623364 WIZO95785 1651 aa13.15□□□□□ -0.3
CDKL5-204ENST00000623364 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.3
CDKL5-204ENST00000623364 SOGA1O94964 1423 aa13.13□□□□□ -0.31
CDKL5-204ENST00000623364 FOXD1Q16676 465 aa13.1□□□□□ -0.31
CDKL5-204ENST00000623364 PCF11O94913 1555 aaKnown RBP13.08□□□□□ -0.32
CDKL5-204ENST00000623364 SHROOM2Q13796 1616 aa13.06□□□□□ -0.32
CDKL5-204ENST00000623364 COL17A1Q9UMD9 1497 aaPredicted RBP13.04□□□□□ -0.32
CDKL5-204ENST00000623364 PTPRMP28827 1452 aa13.01□□□□□ -0.33
CDKL5-204ENST00000623364 PPRC1Q5VV67 1664 aaKnown RBP13□□□□□ -0.33
CDKL5-204ENST00000623364 PRG4Q92954 1404 aaPredicted RBP12.99□□□□□ -0.33
CDKL5-204ENST00000623364 ADCY10Q96PN6 1610 aa12.99□□□□□ -0.33
CDKL5-204ENST00000623364 GRIN2AQ12879 1464 aa12.97□□□□□ -0.33
CDKL5-204ENST00000623364 NUP160Q12769 1436 aa12.97□□□□□ -0.33
CDKL5-204ENST00000623364 PBRM1Q86U86 1689 aa12.97□□□□□ -0.33
CDKL5-204ENST00000623364 HSPA2P54652 639 aa12.95□□□□□ -0.34
CDKL5-204ENST00000623364 TEX14Q8IWB6 1497 aa12.92□□□□□ -0.34
CDKL5-204ENST00000623364 TOP2AP11388 1531 aaKnown RBP12.92□□□□□ -0.34
CDKL5-204ENST00000623364 GLI2P10070 1586 aa12.91□□□□□ -0.34
CDKL5-204ENST00000623364 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
CDKL5-204ENST00000623364 JPH4Q96JJ6 628 aa12.89□□□□□ -0.35
CDKL5-204ENST00000623364 KIF21BO75037 1637 aa12.88□□□□□ -0.35
CDKL5-204ENST00000623364 ADAMTSL3P82987 1691 aa12.85□□□□□ -0.35
CDKL5-204ENST00000623364 PLB1Q6P1J6 1458 aa12.85□□□□□ -0.35
CDKL5-204ENST00000623364 ASXL2Q76L83 1435 aa12.82□□□□□ -0.36
CDKL5-204ENST00000623364 DMRT2Q9Y5R5 561 aa12.82□□□□□ -0.36
CDKL5-204ENST00000623364 MED1Q15648 1581 aaPredicted RBP12.81□□□□□ -0.36
CDKL5-204ENST00000623364 MAP3K4Q9Y6R4 1608 aa12.79□□□□□ -0.36
CDKL5-204ENST00000623364 CCDC88BA6NC98 1476 aa12.78□□□□□ -0.36
CDKL5-204ENST00000623364 ADAMTS12P58397 1594 aa12.77□□□□□ -0.36
CDKL5-204ENST00000623364 KIAA0586Q9BVV6 1533 aa12.77□□□□□ -0.37
CDKL5-204ENST00000623364 IQSEC2Q5JU85 1478 aa12.76□□□□□ -0.37
CDKL5-204ENST00000623364 ABCA5Q8WWZ7 1642 aa12.76□□□□□ -0.37
CDKL5-204ENST00000623364 MADDQ8WXG6 1647 aa12.73□□□□□ -0.37
CDKL5-204ENST00000623364 FHAD1B1AJZ9 1412 aa12.72□□□□□ -0.37
CDKL5-204ENST00000623364 ABCC2Q92887 1545 aa12.72□□□□□ -0.37
CDKL5-204ENST00000623364 EPRSP07814 1512 aaKnown RBP12.71□□□□□ -0.38
CDKL5-204ENST00000623364 YEATS2Q9ULM3 1422 aa12.71□□□□□ -0.38
CDKL5-204ENST00000623364 BCORL1Q5H9F3 1711 aa12.68□□□□□ -0.38
CDKL5-204ENST00000623364 ABCA10Q8WWZ4 1543 aa12.68□□□□□ -0.38
CDKL5-204ENST00000623364 ARID4BQ4LE39 1312 aaPredicted RBP12.68□□□□□ -0.38
CDKL5-204ENST00000623364 UBAP1LF5GYI3 381 aa12.68□□□□□ -0.38
CDKL5-204ENST00000623364 PLPPR3Q6T4P5 718 aa12.68□□□□□ -0.38
CDKL5-204ENST00000623364 RIMS1Q86UR5 1692 aaKnown RBP12.66□□□□□ -0.38
CDKL5-204ENST00000623364 CUX1P39880 1505 aa12.66□□□□□ -0.38
CDKL5-204ENST00000623364 PTPRGP23470 1445 aa12.63□□□□□ -0.39
CDKL5-204ENST00000623364 CUL7Q14999 1698 aa12.62□□□□□ -0.39
CDKL5-204ENST00000623364 LTBP4Q8N2S1 1624 aa12.62□□□□□ -0.39
CDKL5-204ENST00000623364 RUSC2Q8N2Y8 1516 aa12.62□□□□□ -0.39
CDKL5-204ENST00000623364 CFAP43Q8NDM7 1665 aa12.6□□□□□ -0.39
CDKL5-204ENST00000623364 TTBK1Q5TCY1 1321 aaPredicted RBP12.6□□□□□ -0.39
CDKL5-204ENST00000623364 STRCQ7RTU9 1775 aa12.59□□□□□ -0.39
CDKL5-204ENST00000623364 HSPA1LP34931 641 aa12.59□□□□□ -0.39
CDKL5-204ENST00000623364 PTPRTO14522 1441 aa12.59□□□□□ -0.39
CDKL5-204ENST00000623364 MAGI3Q5TCQ9 1506 aa12.58□□□□□ -0.4
CDKL5-204ENST00000623364 CD109Q6YHK3 1445 aa12.56□□□□□ -0.4
CDKL5-204ENST00000623364 POTEDQ86YR6 584 aa12.56□□□□□ -0.4
CDKL5-204ENST00000623364 UHRF1BP1LA0JNW5 1464 aa12.53□□□□□ -0.4
CDKL5-204ENST00000623364 ARAP3Q8WWN8 1544 aa12.53□□□□□ -0.4
CDKL5-204ENST00000623364 SCAF1Q9H7N4 1312 aaKnown RBP12.53□□□□□ -0.4
CDKL5-204ENST00000623364 PREX1Q8TCU6 1659 aa12.51□□□□□ -0.41
CDKL5-204ENST00000623364 ERICH3Q5RHP9 1530 aa12.51□□□□□ -0.41
CDKL5-204ENST00000623364 KDM5BQ9UGL1 1544 aa12.48□□□□□ -0.41
CDKL5-204ENST00000623364 TNIKQ9UKE5 1360 aa12.48□□□□□ -0.41
CDKL5-204ENST00000623364 WDR7Q9Y4E6 1490 aa12.47□□□□□ -0.41
CDKL5-204ENST00000623364 UACAQ9BZF9 1416 aa12.47□□□□□ -0.41
CDKL5-204ENST00000623364 POGZQ7Z3K3 1410 aa12.46□□□□□ -0.41
CDKL5-204ENST00000623364 PIP4K2BP78356 416 aa12.46□□□□□ -0.41
CDKL5-204ENST00000623364 RGS17Q9UGC6 210 aaPredicted RBP12.44□□□□□ -0.42
CDKL5-204ENST00000623364 ZCCHC11Q5TAX3 1644 aaKnown RBP12.44□□□□□ -0.42
CDKL5-204ENST00000623364 RAPGEF3O95398 923 aa12.43□□□□□ -0.42
CDKL5-204ENST00000623364 CARMIL2Q6F5E8 1435 aa12.43□□□□□ -0.42
CDKL5-204ENST00000623364 SRCAPQ6ZRS2 3230 aa12.42□□□□□ -0.42
CDKL5-204ENST00000623364 WRNQ14191 1432 aaPredicted RBP eCLIP12.42□□□□□ -0.42
CDKL5-204ENST00000623364 UHRF1BP1Q6BDS2 1440 aa12.42□□□□□ -0.42
CDKL5-204ENST00000623364 PHLDB1Q86UU1 1377 aa12.42□□□□□ -0.42
CDKL5-204ENST00000623364 IFFO2Q5TF58 517 aa12.41□□□□□ -0.42
CDKL5-204ENST00000623364 KCNH8Q96L42 1107 aa12.41□□□□□ -0.42
CDKL5-204ENST00000623364 TTC37Q6PGP7 1564 aa12.4□□□□□ -0.42
CDKL5-204ENST00000623364 TOM1O60784 492 aa12.4□□□□□ -0.42
CDKL5-204ENST00000623364 FANCAO15360 1455 aa12.39□□□□□ -0.43
CDKL5-204ENST00000623364 MSH5O43196 834 aa12.38□□□□□ -0.43
CDKL5-204ENST00000623364 ZNF335Q9H4Z2 1342 aaPredicted RBP12.37□□□□□ -0.43
CDKL5-204ENST00000623364 FER1L4A9Z1Z3 1794 aa12.37□□□□□ -0.43
CDKL5-204ENST00000623364 SETD1BQ9UPS6 1966 aaKnown RBP12.35□□□□□ -0.43
CDKL5-204ENST00000623364 ARHGEF40Q8TER5 1519 aa12.34□□□□□ -0.43
CDKL5-204ENST00000623364 MLECQ14165 292 aa12.34□□□□□ -0.43
CDKL5-204ENST00000623364 POTEAQ6S8J7 498 aa12.34□□□□□ -0.43
CDKL5-204ENST00000623364 CEBPAP49715 358 aaPredicted RBP12.32□□□□□ -0.44
CDKL5-204ENST00000623364 UPF1Q92900 1129 aaKnown RBP eCLIP12.32□□□□□ -0.44
CDKL5-204ENST00000623364 NCOA1Q15788 1441 aa12.3□□□□□ -0.44
CDKL5-204ENST00000623364 SETD1AO15047 1707 aaKnown RBP12.3□□□□□ -0.44
CDKL5-204ENST00000623364 AKNAQ7Z591 1439 aa12.28□□□□□ -0.44
CDKL5-204ENST00000623364 FRMPD1Q5SYB0 1578 aa12.28□□□□□ -0.44
CDKL5-204ENST00000623364 KIAA0556O60303 1618 aa12.26□□□□□ -0.45
CDKL5-204ENST00000623364 NEO1Q92859 1461 aa12.25□□□□□ -0.45
CDKL5-204ENST00000623364 PIAS4Q8N2W9 510 aaPredicted RBP12.21□□□□□ -0.45
CDKL5-204ENST00000623364 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.46
CDKL5-204ENST00000623364 PTPRKQ15262 1439 aa12.2□□□□□ -0.46
CDKL5-204ENST00000623364 SIGLEC1Q9BZZ2 1709 aa12.19□□□□□ -0.46
CDKL5-204ENST00000623364 NCKAP5LQ9HCH0 1330 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms