RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 AMER1Q5JTC6 1135 aaPredicted RBP11.25□□□□□ -0.61
VPS11-209ENST00000622309 HOMEZQ8IX15 550 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 HAP1P54257 671 aaPredicted RBP11.24□□□□□ -0.61
VPS11-209ENST00000622309 KIF21AQ7Z4S6 1674 aa11.23□□□□□ -0.61
VPS11-209ENST00000622309 TAOK2Q9UL54 1235 aa11.22□□□□□ -0.61
VPS11-209ENST00000622309 DHX37Q8IY37 1157 aaKnown RBP11.22□□□□□ -0.61
VPS11-209ENST00000622309 BCL11BQ9C0K0 894 aaPredicted RBP11.21□□□□□ -0.61
VPS11-209ENST00000622309 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
VPS11-209ENST00000622309 MRC2Q9UBG0 1479 aa11.2□□□□□ -0.62
VPS11-209ENST00000622309 ITGAEP38570 1179 aa11.2□□□□□ -0.62
VPS11-209ENST00000622309 WDR62O43379 1518 aa11.17□□□□□ -0.62
VPS11-209ENST00000622309 CADPSQ9ULU8 1353 aa11.17□□□□□ -0.62
VPS11-209ENST00000622309 TPRNQ4KMQ1 711 aa11.16□□□□□ -0.62
VPS11-209ENST00000622309 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
VPS11-209ENST00000622309 CDK11AQ9UQ88 783 aaPredicted RBP11.15□□□□□ -0.62
VPS11-209ENST00000622309 NBR1Q14596 966 aa11.13□□□□□ -0.63
VPS11-209ENST00000622309 NPM2Q86SE8 214 aaKnown RBP11.13□□□□□ -0.63
VPS11-209ENST00000622309 CCDC88BA6NC98 1476 aa11.12□□□□□ -0.63
VPS11-209ENST00000622309 C14orf37Q86TY3 774 aa11.11□□□□□ -0.63
VPS11-209ENST00000622309 ABCC8Q09428 1581 aa11.1□□□□□ -0.63
VPS11-209ENST00000622309 IL27Q8NEV9 243 aa11.1□□□□□ -0.63
VPS11-209ENST00000622309 RTL5Q5HYW3 569 aaPredicted RBP11.09□□□□□ -0.63
VPS11-209ENST00000622309 CEP164Q9UPV0 1460 aa11.09□□□□□ -0.63
VPS11-209ENST00000622309 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
VPS11-209ENST00000622309 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
VPS11-209ENST00000622309 CHMP4AQ9BY43 222 aa11.04□□□□□ -0.64
VPS11-209ENST00000622309 NOP58Q9Y2X3 529 aaKnown RBP11.03□□□□□ -0.64
VPS11-209ENST00000622309 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.64
VPS11-209ENST00000622309 KCNH8Q96L42 1107 aa11.02□□□□□ -0.64
VPS11-209ENST00000622309 IRX6P78412 446 aaPredicted RBP11□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3CA6NJZ7 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3BA6NNM3 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3Q9UFD9 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 PAXIP1Q6ZW49 1069 aaPredicted RBP10.97□□□□□ -0.65
VPS11-209ENST00000622309 SOGA1O94964 1423 aa10.97□□□□□ -0.65
VPS11-209ENST00000622309 WRNQ14191 1432 aaPredicted RBP eCLIP10.97□□□□□ -0.65
VPS11-209ENST00000622309 CFTRP13569 1480 aa10.96□□□□□ -0.65
VPS11-209ENST00000622309 UBTFP17480 764 aaKnown RBP10.96□□□□□ -0.66
VPS11-209ENST00000622309 GLIPR1L2Q4G1C9 344 aa10.95□□□□□ -0.66
VPS11-209ENST00000622309 ARHGEF11O15085 1522 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 RUSC2Q8N2Y8 1516 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 TRIM52Q96A61 297 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 URB2Q14146 1524 aaKnown RBP10.93□□□□□ -0.66
VPS11-209ENST00000622309 PAK3O75914 559 aaPredicted RBP10.92□□□□□ -0.66
VPS11-209ENST00000622309 FGD1P98174 961 aa10.9□□□□□ -0.66
VPS11-209ENST00000622309 SAMD1Q6SPF0 538 aaPredicted RBP10.9□□□□□ -0.66
VPS11-209ENST00000622309 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
VPS11-209ENST00000622309 ZBTB47Q9UFB7 747 aaPredicted RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 TRHP20396 242 aaPredicted RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 ANP32AP39687 249 aaKnown RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 CYB5RLQ6IPT4 315 aa10.86□□□□□ -0.67
VPS11-209ENST00000622309 CEP162Q5TB80 1403 aa10.84□□□□□ -0.67
VPS11-209ENST00000622309 RSPH6AQ9H0K4 717 aa10.84□□□□□ -0.67
VPS11-209ENST00000622309 PPP4R2Q9NY27 417 aa10.83□□□□□ -0.67
VPS11-209ENST00000622309 C11orf95C9JLR9 678 aaPredicted RBP10.83□□□□□ -0.68
VPS11-209ENST00000622309 VSIG10Q8N0Z9 540 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 IPO9Q96P70 1041 aaKnown RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 ZNF608Q9ULD9 1512 aaPredicted RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 PRDM2Q13029 1718 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 DDX10Q13206 875 aaKnown RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 ZMYND15Q9H091 742 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 CFAP44Q96MT7 982 aa10.81□□□□□ -0.68
VPS11-209ENST00000622309 SYNJ1O43426 1573 aa10.81□□□□□ -0.68
VPS11-209ENST00000622309 TAF7LQ5H9L4 462 aa10.8□□□□□ -0.68
VPS11-209ENST00000622309 WASHC2AQ641Q2 1341 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 ARAP1Q96P48 1450 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 CCER2I3L3R5 266 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 BRPF3Q9ULD4 1205 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 ANP32CO43423 234 aa10.78□□□□□ -0.68
VPS11-209ENST00000622309 NEFMP07197 916 aa10.78□□□□□ -0.68
VPS11-209ENST00000622309 EIF4G3O43432 1585 aaKnown RBP10.78□□□□□ -0.68
VPS11-209ENST00000622309 RBM10P98175 930 aaKnown RBP10.77□□□□□ -0.68
VPS11-209ENST00000622309 USP35Q9P2H5 1018 aa10.77□□□□□ -0.68
VPS11-209ENST00000622309 TOPBP1Q92547 1522 aa10.77□□□□□ -0.68
VPS11-209ENST00000622309 WASHC2CQ9Y4E1 1318 aa10.75□□□□□ -0.69
VPS11-209ENST00000622309 B4GALNT3Q6L9W6 998 aa10.75□□□□□ -0.69
VPS11-209ENST00000622309 DHX57Q6P158 1386 aaKnown RBP10.75□□□□□ -0.69
VPS11-209ENST00000622309 CHD1O14646 1710 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 TNIKQ9UKE5 1360 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 AAMPQ13685 434 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 PPP6R1Q9UPN7 881 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 DNMBPQ6XZF7 1577 aa10.73□□□□□ -0.69
VPS11-209ENST00000622309 HNRNPUQ00839 825 aaKnown RBP eCLIP10.73□□□□□ -0.69
VPS11-209ENST00000622309 EEA1Q15075 1411 aa10.72□□□□□ -0.69
VPS11-209ENST00000622309 LAS1LQ9Y4W2 734 aaKnown RBP10.72□□□□□ -0.69
VPS11-209ENST00000622309 GOLGA3Q08378 1498 aa10.72□□□□□ -0.69
VPS11-209ENST00000622309 BRD2P25440 801 aaKnown RBP10.71□□□□□ -0.69
VPS11-209ENST00000622309 FBLN2P98095 1184 aa10.71□□□□□ -0.7
VPS11-209ENST00000622309 PPM1GO15355 546 aaPredicted RBP10.69□□□□□ -0.7
VPS11-209ENST00000622309 AQRO60306 1485 aaKnown RBP eCLIP10.69□□□□□ -0.76e-11■■■■□ 25.1
VPS11-209ENST00000622309 TARBP1Q13395 1621 aaKnown RBP10.69□□□□□ -0.7
VPS11-209ENST00000622309 GSE1Q14687 1217 aa10.68□□□□□ -0.7
VPS11-209ENST00000622309 RAPGEF2Q9Y4G8 1499 aa10.68□□□□□ -0.7
VPS11-209ENST00000622309 FAM43AQ8N2R8 423 aa10.67□□□□□ -0.7
VPS11-209ENST00000622309 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
VPS11-209ENST00000622309 PPP1R15AO75807 674 aaPredicted RBP10.66□□□□□ -0.7
VPS11-209ENST00000622309 CLIP1P30622 1438 aa10.65□□□□□ -0.7
VPS11-209ENST00000622309 CLASP1Q7Z460 1538 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms