RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CDK11AQ9UQ88 783 aaPredicted RBP23.12■■□□□ 1.29
CPSF1-213ENST00000620219 ABCA10Q8WWZ4 1543 aa23.11■■□□□ 1.29
CPSF1-213ENST00000620219 ARAP1Q96P48 1450 aa23.1■■□□□ 1.29
CPSF1-213ENST00000620219 MYT1LQ9UL68 1186 aa23.1■■□□□ 1.29
CPSF1-213ENST00000620219 CHIC2Q9UKJ5 165 aa23.09■■□□□ 1.29
CPSF1-213ENST00000620219 FHAD1B1AJZ9 1412 aa23.09■■□□□ 1.29
CPSF1-213ENST00000620219 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.29
CPSF1-213ENST00000620219 TRIM52Q96A61 297 aa23.06■■□□□ 1.28
CPSF1-213ENST00000620219 NEUROD1Q13562 356 aa23.06■■□□□ 1.28
CPSF1-213ENST00000620219 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
CPSF1-213ENST00000620219 KIF21AQ7Z4S6 1674 aa23.03■■□□□ 1.28
CPSF1-213ENST00000620219 ARHGAP35Q9NRY4 1499 aa23.02■■□□□ 1.28
CPSF1-213ENST00000620219 JPH4Q96JJ6 628 aa23.01■■□□□ 1.27
CPSF1-213ENST00000620219 GRIN2BQ13224 1484 aa23■■□□□ 1.27
CPSF1-213ENST00000620219 IFT140Q96RY7 1462 aa22.99■■□□□ 1.27
CPSF1-213ENST00000620219 KCNH8Q96L42 1107 aa22.95■■□□□ 1.26
CPSF1-213ENST00000620219 FMN1Q68DA7 1419 aa22.94■■□□□ 1.26
CPSF1-213ENST00000620219 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
CPSF1-213ENST00000620219 SNAPC4Q5SXM2 1469 aa22.91■■□□□ 1.26
CPSF1-213ENST00000620219 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
CPSF1-213ENST00000620219 PLEKHD1A6NEE1 506 aa22.9■■□□□ 1.26
CPSF1-213ENST00000620219 RRP7BPQ9NSQ0 103 aa22.89■■□□□ 1.26
CPSF1-213ENST00000620219 CARMIL2Q6F5E8 1435 aa22.82■■□□□ 1.24
CPSF1-213ENST00000620219 DIEXFQ68CQ4 756 aaKnown RBP22.79■■□□□ 1.24
CPSF1-213ENST00000620219 CFDP1Q9UEE9 299 aaPredicted RBP22.79■■□□□ 1.24
CPSF1-213ENST00000620219 NPM1P06748 294 aaKnown RBP eCLIP22.74■■□□□ 1.23
CPSF1-213ENST00000620219 YTHDC1Q96MU7 727 aaKnown RBP22.72■■□□□ 1.23
CPSF1-213ENST00000620219 CUL7Q14999 1698 aa22.72■■□□□ 1.23
CPSF1-213ENST00000620219 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
CPSF1-213ENST00000620219 ZNF316A6NFI3 1004 aaPredicted RBP22.66■■□□□ 1.22
CPSF1-213ENST00000620219 CASKIN1Q8WXD9 1431 aa22.64■■□□□ 1.22
CPSF1-213ENST00000620219 TSPY4P0CV99 314 aa22.64■■□□□ 1.22
CPSF1-213ENST00000620219 TSPY10P0CW01 314 aa22.64■■□□□ 1.22
CPSF1-213ENST00000620219 PTPRGP23470 1445 aa22.63■■□□□ 1.21
CPSF1-213ENST00000620219 LRRC9Q6ZRR7 1453 aa22.63■■□□□ 1.21
CPSF1-213ENST00000620219 GRIN2AQ12879 1464 aa22.63■■□□□ 1.21
CPSF1-213ENST00000620219 WDR62O43379 1518 aa22.62■■□□□ 1.21
CPSF1-213ENST00000620219 ZNF326Q5BKZ1 582 aaKnown RBP22.62■■□□□ 1.21
CPSF1-213ENST00000620219 SIN3AQ96ST3 1273 aa22.59■■□□□ 1.21
CPSF1-213ENST00000620219 SYNJ2O15056 1496 aa22.59■■□□□ 1.21
CPSF1-213ENST00000620219 EFCAB5A4FU69 1503 aa22.59■■□□□ 1.21
CPSF1-213ENST00000620219 KIAA0586Q9BVV6 1533 aa22.59■■□□□ 1.21
CPSF1-213ENST00000620219 PCF11O94913 1555 aaKnown RBP22.58■■□□□ 1.21
CPSF1-213ENST00000620219 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.58■■□□□ 1.214e-7■■■□□ 16.9
CPSF1-213ENST00000620219 IQGAP2Q13576 1575 aa22.58■■□□□ 1.21
CPSF1-213ENST00000620219 PRG4Q92954 1404 aaPredicted RBP22.57■■□□□ 1.2
CPSF1-213ENST00000620219 POLR3GLQ9BT43 218 aa22.57■■□□□ 1.2
CPSF1-213ENST00000620219 TARBP1Q13395 1621 aaKnown RBP22.56■■□□□ 1.2
CPSF1-213ENST00000620219 RAB3GAP2Q9H2M9 1393 aa22.56■■□□□ 1.2
CPSF1-213ENST00000620219 TIAM1Q13009 1591 aa22.55■■□□□ 1.2
CPSF1-213ENST00000620219 MAGI1Q96QZ7 1491 aaPredicted RBP22.55■■□□□ 1.2
CPSF1-213ENST00000620219 ABCA5Q8WWZ7 1642 aa22.55■■□□□ 1.2
CPSF1-213ENST00000620219 FYCO1Q9BQS8 1478 aa22.54■■□□□ 1.2
CPSF1-213ENST00000620219 OSCARQ8IYS5 282 aa22.53■■□□□ 1.2
CPSF1-213ENST00000620219 ZNF644Q9H582 1327 aaPredicted RBP22.53■■□□□ 1.2
CPSF1-213ENST00000620219 EIF4G3O43432 1585 aaKnown RBP22.52■■□□□ 1.2
CPSF1-213ENST00000620219 CNGB1Q14028 1251 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-213ENST00000620219 SETD5Q9C0A6 1442 aa22.5■■□□□ 1.19
CPSF1-213ENST00000620219 SLC4A1APQ9BWU0 796 aaKnown RBP22.49■■□□□ 1.19
CPSF1-213ENST00000620219 DHX57Q6P158 1386 aaKnown RBP22.48■■□□□ 1.19
CPSF1-213ENST00000620219 CCDC18Q5T9S5 1454 aa22.48■■□□□ 1.19
CPSF1-213ENST00000620219 CDK13Q14004 1512 aaKnown RBP22.47■■□□□ 1.19
CPSF1-213ENST00000620219 ADAMTS12P58397 1594 aa22.47■■□□□ 1.19
CPSF1-213ENST00000620219 RRBP1Q9P2E9 1410 aaKnown RBP22.47■■□□□ 1.19
CPSF1-213ENST00000620219 HIRIP3Q9BW71 556 aaPredicted RBP22.47■■□□□ 1.19
CPSF1-213ENST00000620219 TONSLQ96HA7 1378 aa22.46■■□□□ 1.19
CPSF1-213ENST00000620219 HNRNPMP52272 730 aaKnown RBP eCLIP22.45■■□□□ 1.185e-19■■■■■ 50.3
CPSF1-213ENST00000620219 NCOA2Q15596 1464 aa22.44■■□□□ 1.18
CPSF1-213ENST00000620219 FOXD1Q16676 465 aa22.44■■□□□ 1.18
CPSF1-213ENST00000620219 PLB1Q6P1J6 1458 aa22.44■■□□□ 1.18
CPSF1-213ENST00000620219 FGD6Q6ZV73 1430 aa22.43■■□□□ 1.18
CPSF1-213ENST00000620219 PBRM1Q86U86 1689 aa22.42■■□□□ 1.18
CPSF1-213ENST00000620219 CTTNBP2Q8WZ74 1663 aa22.41■■□□□ 1.18
CPSF1-213ENST00000620219 MYOM3Q5VTT5 1437 aa22.38■■□□□ 1.17
CPSF1-213ENST00000620219 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
CPSF1-213ENST00000620219 EPRSP07814 1512 aaKnown RBP22.37■■□□□ 1.17
CPSF1-213ENST00000620219 THOC2Q8NI27 1593 aaKnown RBP22.35■■□□□ 1.17
CPSF1-213ENST00000620219 WDR97A6NE52 1622 aa22.33■■□□□ 1.17
CPSF1-213ENST00000620219 CENPBP07199 599 aaPredicted RBP22.31■■□□□ 1.16
CPSF1-213ENST00000620219 MIER1Q8N108 512 aa22.29■■□□□ 1.16
CPSF1-213ENST00000620219 KDM2AQ9Y2K7 1162 aa22.29■■□□□ 1.16
CPSF1-213ENST00000620219 HECW1Q76N89 1606 aa22.28■■□□□ 1.16
CPSF1-213ENST00000620219 CLSPNQ9HAW4 1339 aa22.26■■□□□ 1.15
CPSF1-213ENST00000620219 EFCAB2Q5VUJ9 269 aa22.25■■□□□ 1.15
CPSF1-213ENST00000620219 MAP3K1Q13233 1512 aa22.23■■□□□ 1.15
CPSF1-213ENST00000620219 MPHOSPH9Q99550 1183 aa22.23■■□□□ 1.15
CPSF1-213ENST00000620219 EHBP1L1Q8N3D4 1523 aa22.22■■□□□ 1.15
CPSF1-213ENST00000620219 RGL3Q3MIN7 710 aa22.22■■□□□ 1.15
CPSF1-213ENST00000620219 DDX10Q13206 875 aaKnown RBP22.21■■□□□ 1.15
CPSF1-213ENST00000620219 DISP1Q96F81 1524 aa22.21■■□□□ 1.15
CPSF1-213ENST00000620219 TROQ12816 1431 aaPredicted RBP22.21■■□□□ 1.15
CPSF1-213ENST00000620219 UGGT2Q9NYU1 1516 aa22.2■■□□□ 1.14
CPSF1-213ENST00000620219 CEP170Q5SW79 1584 aa22.19■■□□□ 1.14
CPSF1-213ENST00000620219 CHGAP10645 457 aaKnown RBP22.19■■□□□ 1.14
CPSF1-213ENST00000620219 NUP160Q12769 1436 aa22.19■■□□□ 1.14
CPSF1-213ENST00000620219 PKD2Q13563 968 aa22.18■■□□□ 1.14
CPSF1-213ENST00000620219 UACAQ9BZF9 1416 aa22.17■■□□□ 1.14
CPSF1-213ENST00000620219 KIAA0556O60303 1618 aa22.16■■□□□ 1.14
CPSF1-213ENST00000620219 NUP153P49790 1475 aaKnown RBP22.16■■□□□ 1.14
CPSF1-213ENST00000620219 ANKRD30AQ9BXX3 1397 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms