RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 FHAD1B1AJZ9 1412 aa27.22■■□□□ 1.95
CNOT3-209ENST00000617930 VPS8Q8N3P4 1428 aa27.2■■□□□ 1.95
CNOT3-209ENST00000617930 ARAP1Q96P48 1450 aa27.19■■□□□ 1.94
CNOT3-209ENST00000617930 CTTNBP2Q8WZ74 1663 aa27.18■■□□□ 1.94
CNOT3-209ENST00000617930 ARHGAP35Q9NRY4 1499 aa27.17■■□□□ 1.94
CNOT3-209ENST00000617930 MAGI1Q96QZ7 1491 aaPredicted RBP27.08■■□□□ 1.93
CNOT3-209ENST00000617930 GRIN2AQ12879 1464 aa27.04■■□□□ 1.92
CNOT3-209ENST00000617930 SYNJ2O15056 1496 aa27.01■■□□□ 1.91
CNOT3-209ENST00000617930 CEP170Q5SW79 1584 aa26.94■■□□□ 1.9
CNOT3-209ENST00000617930 P3H3Q8IVL6 736 aa26.94■■□□□ 1.9
CNOT3-209ENST00000617930 SAMD9Q5K651 1589 aa26.93■■□□□ 1.9
CNOT3-209ENST00000617930 FHOD3Q2V2M9 1422 aa26.92■■□□□ 1.9
CNOT3-209ENST00000617930 IQGAP2Q13576 1575 aa26.92■■□□□ 1.9
CNOT3-209ENST00000617930 EFCAB5A4FU69 1503 aa26.9■■□□□ 1.9
CNOT3-209ENST00000617930 CHMP7Q8WUX9 453 aaPredicted RBP26.9■■□□□ 1.9
CNOT3-209ENST00000617930 FBLN2P98095 1184 aa26.89■■□□□ 1.89
CNOT3-209ENST00000617930 KIAA0586Q9BVV6 1533 aa26.86■■□□□ 1.89
CNOT3-209ENST00000617930 NUP160Q12769 1436 aa26.86■■□□□ 1.89
CNOT3-209ENST00000617930 APLP2Q06481 763 aa26.85■■□□□ 1.89
CNOT3-209ENST00000617930 KANK4Q5T7N3 995 aaPredicted RBP26.84■■□□□ 1.89
CNOT3-209ENST00000617930 CHD1O14646 1710 aa26.84■■□□□ 1.89
CNOT3-209ENST00000617930 UGGT2Q9NYU1 1516 aa26.8■■□□□ 1.88
CNOT3-209ENST00000617930 PCF11O94913 1555 aaKnown RBP26.78■■□□□ 1.88
CNOT3-209ENST00000617930 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.78■■□□□ 1.88
CNOT3-209ENST00000617930 DISP1Q96F81 1524 aa26.75■■□□□ 1.87
CNOT3-209ENST00000617930 ZEB1P37275 1124 aaPredicted RBP26.71■■□□□ 1.87
CNOT3-209ENST00000617930 KIAA0556O60303 1618 aa26.69■■□□□ 1.86
CNOT3-209ENST00000617930 CASKIN1Q8WXD9 1431 aa26.64■■□□□ 1.86
CNOT3-209ENST00000617930 LRRIQ1Q96JM4 1722 aa26.64■■□□□ 1.85
CNOT3-209ENST00000617930 FMN1Q68DA7 1419 aa26.64■■□□□ 1.85
CNOT3-209ENST00000617930 TIAM1Q13009 1591 aa26.62■■□□□ 1.85
CNOT3-209ENST00000617930 FYCO1Q9BQS8 1478 aa26.62■■□□□ 1.85
CNOT3-209ENST00000617930 HNRNPUL2Q1KMD3 747 aaKnown RBP26.61■■□□□ 1.85
CNOT3-209ENST00000617930 JPH4Q96JJ6 628 aa26.6■■□□□ 1.85
CNOT3-209ENST00000617930 CCER1Q8TC90 406 aaPredicted RBP26.59■■□□□ 1.85
CNOT3-209ENST00000617930 CFAP43Q8NDM7 1665 aa26.58■■□□□ 1.85
CNOT3-209ENST00000617930 MAP3K1Q13233 1512 aa26.56■■□□□ 1.84
CNOT3-209ENST00000617930 ATP1B4Q9UN42 357 aaPredicted RBP26.53■■□□□ 1.84
CNOT3-209ENST00000617930 SHROOM2Q13796 1616 aa26.51■■□□□ 1.83
CNOT3-209ENST00000617930 CLASP1Q7Z460 1538 aa26.5■■□□□ 1.83
CNOT3-209ENST00000617930 LRRC9Q6ZRR7 1453 aa26.48■■□□□ 1.83
CNOT3-209ENST00000617930 RRBP1Q9P2E9 1410 aaKnown RBP26.48■■□□□ 1.83
CNOT3-209ENST00000617930 ERCC6L2Q5T890 1561 aa26.47■■□□□ 1.83
CNOT3-209ENST00000617930 PRG4Q92954 1404 aaPredicted RBP26.47■■□□□ 1.83
CNOT3-209ENST00000617930 CARMIL2Q6F5E8 1435 aa26.43■■□□□ 1.82
CNOT3-209ENST00000617930 HECW1Q76N89 1606 aa26.42■■□□□ 1.82
CNOT3-209ENST00000617930 PLB1Q6P1J6 1458 aa26.41■■□□□ 1.82
CNOT3-209ENST00000617930 CDK13Q14004 1512 aaKnown RBP26.4■■□□□ 1.82
CNOT3-209ENST00000617930 MAGI3Q5TCQ9 1506 aa26.4■■□□□ 1.82
CNOT3-209ENST00000617930 RAPGEF6Q8TEU7 1601 aa26.4■■□□□ 1.82
CNOT3-209ENST00000617930 NUP153P49790 1475 aaKnown RBP26.39■■□□□ 1.81
CNOT3-209ENST00000617930 EPRSP07814 1512 aaKnown RBP26.38■■□□□ 1.81
CNOT3-209ENST00000617930 PHLDB1Q86UU1 1377 aa26.37■■□□□ 1.81
CNOT3-209ENST00000617930 CCNB3Q8WWL7 1395 aa26.37■■□□□ 1.81
CNOT3-209ENST00000617930 ARID3CA6NKF2 412 aa26.36■■□□□ 1.81
CNOT3-209ENST00000617930 ABCA8O94911 1581 aa26.32■■□□□ 1.8
CNOT3-209ENST00000617930 CCDC18Q5T9S5 1454 aa26.31■■□□□ 1.8
CNOT3-209ENST00000617930 PTPRGP23470 1445 aa26.25■■□□□ 1.79
CNOT3-209ENST00000617930 MTUS2Q5JR59 1369 aa26.24■■□□□ 1.79
CNOT3-209ENST00000617930 EHBP1L1Q8N3D4 1523 aa26.23■■□□□ 1.79
CNOT3-209ENST00000617930 ITGAEP38570 1179 aa26.19■■□□□ 1.78
CNOT3-209ENST00000617930 ARHGEF11O15085 1522 aa26.18■■□□□ 1.78
CNOT3-209ENST00000617930 NCOA2Q15596 1464 aa26.18■■□□□ 1.78
CNOT3-209ENST00000617930 OSCARQ8IYS5 282 aa26.15■■□□□ 1.78
CNOT3-209ENST00000617930 SUPT6HQ7KZ85 1726 aaKnown RBP26.15■■□□□ 1.78
CNOT3-209ENST00000617930 ATP10BO94823 1461 aa26.15■■□□□ 1.78
CNOT3-209ENST00000617930 UACAQ9BZF9 1416 aa26.11■■□□□ 1.77
CNOT3-209ENST00000617930 DHX57Q6P158 1386 aaKnown RBP26.11■■□□□ 1.77
CNOT3-209ENST00000617930 FAM50AQ14320 339 aaKnown RBP26.09■■□□□ 1.77
CNOT3-209ENST00000617930 ABCC2Q92887 1545 aa26.06■■□□□ 1.76
CNOT3-209ENST00000617930 FGD6Q6ZV73 1430 aa26.06■■□□□ 1.76
CNOT3-209ENST00000617930 KIF14Q15058 1648 aa26.04■■□□□ 1.76
CNOT3-209ENST00000617930 TROQ12816 1431 aaPredicted RBP26.04■■□□□ 1.76
CNOT3-209ENST00000617930 MYOM3Q5VTT5 1437 aa26.04■■□□□ 1.76
CNOT3-209ENST00000617930 RAB3GAP2Q9H2M9 1393 aa26■■□□□ 1.75
CNOT3-209ENST00000617930 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26■■□□□ 1.75
CNOT3-209ENST00000617930 ADCY10Q96PN6 1610 aa25.99■■□□□ 1.75
CNOT3-209ENST00000617930 UHRF1BP1LA0JNW5 1464 aa25.96■■□□□ 1.75
CNOT3-209ENST00000617930 SETD5Q9C0A6 1442 aa25.94■■□□□ 1.74
CNOT3-209ENST00000617930 CDK11AQ9UQ88 783 aaPredicted RBP25.94■■□□□ 1.74
CNOT3-209ENST00000617930 PTPN23Q9H3S7 1636 aa25.94■■□□□ 1.74
CNOT3-209ENST00000617930 PTPRKQ15262 1439 aa25.93■■□□□ 1.74
CNOT3-209ENST00000617930 ZCCHC11Q5TAX3 1644 aaKnown RBP25.93■■□□□ 1.74
CNOT3-209ENST00000617930 CLSPNQ9HAW4 1339 aa25.91■■□□□ 1.74
CNOT3-209ENST00000617930 KDM5BQ9UGL1 1544 aa25.9■■□□□ 1.74
CNOT3-209ENST00000617930 ABCC10Q5T3U5 1492 aa25.9■■□□□ 1.74
CNOT3-209ENST00000617930 TCOF1Q13428 1488 aaKnown RBP25.88■■□□□ 1.73
CNOT3-209ENST00000617930 PLEKHD1A6NEE1 506 aa25.88■■□□□ 1.73
CNOT3-209ENST00000617930 GPATCH8Q9UKJ3 1502 aaKnown RBP25.86■■□□□ 1.73
CNOT3-209ENST00000617930 MIA2Q96PC5 1412 aa25.84■■□□□ 1.73
CNOT3-209ENST00000617930 CDC42BPAQ5VT25 1732 aa25.83■■□□□ 1.73
CNOT3-209ENST00000617930 ZNF644Q9H582 1327 aaPredicted RBP25.82■■□□□ 1.72
CNOT3-209ENST00000617930 MAPKBP1O60336 1514 aa25.81■■□□□ 1.72
CNOT3-209ENST00000617930 TTC37Q6PGP7 1564 aa25.78■■□□□ 1.72
CNOT3-209ENST00000617930 ITSN2Q9NZM3 1697 aa25.78■■□□□ 1.72
CNOT3-209ENST00000617930 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.76■■□□□ 1.71
CNOT3-209ENST00000617930 RIMBP3CA6NJZ7 1639 aa25.73■■□□□ 1.71
CNOT3-209ENST00000617930 RIMBP3BA6NNM3 1639 aa25.73■■□□□ 1.71
CNOT3-209ENST00000617930 RIMBP3Q9UFD9 1639 aa25.73■■□□□ 1.71
CNOT3-209ENST00000617930 CAMSAP2Q08AD1 1489 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms