RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
PDPN-211ENST00000617617 IQGAP2Q13576 1575 aa18.89■□□□□ 0.61
PDPN-211ENST00000617617 SAMD9Q5K651 1589 aa18.88■□□□□ 0.61
PDPN-211ENST00000617617 KIAA0586Q9BVV6 1533 aa18.86■□□□□ 0.61
PDPN-211ENST00000617617 CLIP1P30622 1438 aa18.85■□□□□ 0.61
PDPN-211ENST00000617617 UGGT2Q9NYU1 1516 aa18.84■□□□□ 0.61
PDPN-211ENST00000617617 ARHGAP35Q9NRY4 1499 aa18.8■□□□□ 0.6
PDPN-211ENST00000617617 SHROOM2Q13796 1616 aa18.8■□□□□ 0.6
PDPN-211ENST00000617617 ARAP1Q96P48 1450 aa18.78■□□□□ 0.6
PDPN-211ENST00000617617 CHMP7Q8WUX9 453 aaPredicted RBP18.78■□□□□ 0.6
PDPN-211ENST00000617617 CLASP1Q7Z460 1538 aa18.77■□□□□ 0.59
PDPN-211ENST00000617617 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
PDPN-211ENST00000617617 VPS8Q8N3P4 1428 aa18.72■□□□□ 0.59
PDPN-211ENST00000617617 KIAA0556O60303 1618 aa18.72■□□□□ 0.59
PDPN-211ENST00000617617 DISP1Q96F81 1524 aa18.68■□□□□ 0.58
PDPN-211ENST00000617617 MAP3K1Q13233 1512 aa18.62■□□□□ 0.57
PDPN-211ENST00000617617 FMN1Q68DA7 1419 aa18.62■□□□□ 0.57
PDPN-211ENST00000617617 FBLN2P98095 1184 aa18.59■□□□□ 0.57
PDPN-211ENST00000617617 FYCO1Q9BQS8 1478 aa18.59■□□□□ 0.57
PDPN-211ENST00000617617 CFAP43Q8NDM7 1665 aa18.58■□□□□ 0.57
PDPN-211ENST00000617617 PCF11O94913 1555 aaKnown RBP18.58■□□□□ 0.56
PDPN-211ENST00000617617 CARMIL2Q6F5E8 1435 aa18.58■□□□□ 0.56
PDPN-211ENST00000617617 FHOD3Q2V2M9 1422 aa18.57■□□□□ 0.56
PDPN-211ENST00000617617 CASKIN1Q8WXD9 1431 aa18.57■□□□□ 0.56
PDPN-211ENST00000617617 JPH4Q96JJ6 628 aa18.55■□□□□ 0.56
PDPN-211ENST00000617617 LRRIQ1Q96JM4 1722 aa18.54■□□□□ 0.56
PDPN-211ENST00000617617 HECW1Q76N89 1606 aa18.52■□□□□ 0.56
PDPN-211ENST00000617617 RAPGEF6Q8TEU7 1601 aa18.51■□□□□ 0.55
PDPN-211ENST00000617617 PRG4Q92954 1404 aaPredicted RBP18.5■□□□□ 0.55
PDPN-211ENST00000617617 TIAM1Q13009 1591 aa18.49■□□□□ 0.55
PDPN-211ENST00000617617 ABCA8O94911 1581 aa18.49■□□□□ 0.55
PDPN-211ENST00000617617 CCDC18Q5T9S5 1454 aa18.45■□□□□ 0.54
PDPN-211ENST00000617617 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
PDPN-211ENST00000617617 OSCARQ8IYS5 282 aa18.45■□□□□ 0.54
PDPN-211ENST00000617617 ERCC6L2Q5T890 1561 aa18.44■□□□□ 0.54
PDPN-211ENST00000617617 P3H3Q8IVL6 736 aa18.4■□□□□ 0.54
PDPN-211ENST00000617617 UHRF1BP1LA0JNW5 1464 aa18.38■□□□□ 0.53
PDPN-211ENST00000617617 NUP153P49790 1475 aaKnown RBP18.38■□□□□ 0.53
PDPN-211ENST00000617617 EPRSP07814 1512 aaKnown RBP18.37■□□□□ 0.53
PDPN-211ENST00000617617 PTPRGP23470 1445 aa18.35■□□□□ 0.53
PDPN-211ENST00000617617 LRRC9Q6ZRR7 1453 aa18.35■□□□□ 0.53
PDPN-211ENST00000617617 ABCC2Q92887 1545 aa18.34■□□□□ 0.53
PDPN-211ENST00000617617 PLB1Q6P1J6 1458 aa18.33■□□□□ 0.52
PDPN-211ENST00000617617 EHBP1L1Q8N3D4 1523 aa18.33■□□□□ 0.52
PDPN-211ENST00000617617 UACAQ9BZF9 1416 aa18.31■□□□□ 0.52
PDPN-211ENST00000617617 ADCY10Q96PN6 1610 aa18.31■□□□□ 0.52
PDPN-211ENST00000617617 APLP2Q06481 763 aa18.31■□□□□ 0.52
PDPN-211ENST00000617617 SUPT6HQ7KZ85 1726 aaKnown RBP18.29■□□□□ 0.52
PDPN-211ENST00000617617 ARHGEF11O15085 1522 aa18.27■□□□□ 0.52
PDPN-211ENST00000617617 CDK13Q14004 1512 aaKnown RBP18.26■□□□□ 0.51
PDPN-211ENST00000617617 MAGI3Q5TCQ9 1506 aa18.26■□□□□ 0.51
PDPN-211ENST00000617617 KDM5BQ9UGL1 1544 aa18.24■□□□□ 0.51
PDPN-211ENST00000617617 RIMBP3CA6NJZ7 1639 aa18.24■□□□□ 0.51
PDPN-211ENST00000617617 RIMBP3BA6NNM3 1639 aa18.24■□□□□ 0.51
PDPN-211ENST00000617617 RIMBP3Q9UFD9 1639 aa18.24■□□□□ 0.51
PDPN-211ENST00000617617 ZCCHC11Q5TAX3 1644 aaKnown RBP18.24■□□□□ 0.51
PDPN-211ENST00000617617 ATP10BO94823 1461 aa18.23■□□□□ 0.51
PDPN-211ENST00000617617 KANK4Q5T7N3 995 aaPredicted RBP18.21■□□□□ 0.51
PDPN-211ENST00000617617 TRIM26Q12899 539 aaPredicted RBP18.18■□□□□ 0.5
PDPN-211ENST00000617617 TROQ12816 1431 aaPredicted RBP18.17■□□□□ 0.5
PDPN-211ENST00000617617 RRBP1Q9P2E9 1410 aaKnown RBP18.17■□□□□ 0.5
PDPN-211ENST00000617617 MTUS2Q5JR59 1369 aa18.15■□□□□ 0.5
PDPN-211ENST00000617617 ITSN2Q9NZM3 1697 aa18.14■□□□□ 0.49
PDPN-211ENST00000617617 KIF14Q15058 1648 aa18.14■□□□□ 0.49
PDPN-211ENST00000617617 NCOA2Q15596 1464 aa18.14■□□□□ 0.49
PDPN-211ENST00000617617 CDK11AQ9UQ88 783 aaPredicted RBP18.14■□□□□ 0.49
PDPN-211ENST00000617617 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.49
PDPN-211ENST00000617617 ATP1B4Q9UN42 357 aaPredicted RBP18.1■□□□□ 0.49
PDPN-211ENST00000617617 CDC42BPAQ5VT25 1732 aa18.09■□□□□ 0.49
PDPN-211ENST00000617617 ABCC10Q5T3U5 1492 aa18.08■□□□□ 0.49
PDPN-211ENST00000617617 PHLDB1Q86UU1 1377 aa18.08■□□□□ 0.48
PDPN-211ENST00000617617 MYOM3Q5VTT5 1437 aa18.08■□□□□ 0.48
PDPN-211ENST00000617617 TCOF1Q13428 1488 aaKnown RBP18.06■□□□□ 0.48
PDPN-211ENST00000617617 MIA2Q96PC5 1412 aa18.06■□□□□ 0.48
PDPN-211ENST00000617617 PPARGC1BQ86YN6 1023 aaKnown RBP18.05■□□□□ 0.48
PDPN-211ENST00000617617 MAPKBP1O60336 1514 aa18.05■□□□□ 0.48
PDPN-211ENST00000617617 PREX2Q70Z35 1606 aa18.04■□□□□ 0.48
PDPN-211ENST00000617617 TTBK1Q5TCY1 1321 aaPredicted RBP18.04■□□□□ 0.48
PDPN-211ENST00000617617 MYO5CQ9NQX4 1742 aa18.03■□□□□ 0.48
PDPN-211ENST00000617617 PTPN23Q9H3S7 1636 aa18.03■□□□□ 0.48
PDPN-211ENST00000617617 FGD6Q6ZV73 1430 aa18.03■□□□□ 0.48
PDPN-211ENST00000617617 PLEKHD1A6NEE1 506 aa18.03■□□□□ 0.48
PDPN-211ENST00000617617 WDR7Q9Y4E6 1490 aa18.02■□□□□ 0.48
PDPN-211ENST00000617617 ARAP3Q8WWN8 1544 aa18.02■□□□□ 0.47
PDPN-211ENST00000617617 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.47
PDPN-211ENST00000617617 ABCA9Q8IUA7 1624 aa18.01■□□□□ 0.47
PDPN-211ENST00000617617 CDC42BPBQ9Y5S2 1711 aa18.01■□□□□ 0.47
PDPN-211ENST00000617617 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.01■□□□□ 0.47
PDPN-211ENST00000617617 TTC37Q6PGP7 1564 aa17.99■□□□□ 0.47
PDPN-211ENST00000617617 GPATCH8Q9UKJ3 1502 aaKnown RBP17.99■□□□□ 0.47
PDPN-211ENST00000617617 ASXL2Q76L83 1435 aa17.95■□□□□ 0.46
PDPN-211ENST00000617617 GLI2P10070 1586 aa17.94■□□□□ 0.46
PDPN-211ENST00000617617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.94■□□□□ 0.46
PDPN-211ENST00000617617 HNRNPUL2Q1KMD3 747 aaKnown RBP17.94■□□□□ 0.46
PDPN-211ENST00000617617 CROCC2H7BZ55 1655 aa17.93■□□□□ 0.46
PDPN-211ENST00000617617 ARID3CA6NKF2 412 aa17.92■□□□□ 0.46
PDPN-211ENST00000617617 DNMT1P26358 1616 aaKnown RBP17.92■□□□□ 0.46
PDPN-211ENST00000617617 PCGF6Q9BYE7 350 aa17.91■□□□□ 0.46
PDPN-211ENST00000617617 ARHGEF5Q12774 1597 aa17.9■□□□□ 0.46
PDPN-211ENST00000617617 MAP3K4Q9Y6R4 1608 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms