RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 HIRIP3Q9BW71 556 aaPredicted RBP21.04■□□□□ 0.96
SHROOM1-208ENST00000617339 POLA1P09884 1462 aaPredicted RBP21.03■□□□□ 0.96
SHROOM1-208ENST00000617339 CHIC2Q9UKJ5 165 aa21.01■□□□□ 0.95
SHROOM1-208ENST00000617339 SIN3AQ96ST3 1273 aa21.01■□□□□ 0.95
SHROOM1-208ENST00000617339 TOPBP1Q92547 1522 aa21■□□□□ 0.95
SHROOM1-208ENST00000617339 CCNB3Q8WWL7 1395 aa20.99■□□□□ 0.95
SHROOM1-208ENST00000617339 ERICH3Q5RHP9 1530 aa20.97■□□□□ 0.95
SHROOM1-208ENST00000617339 AQRO60306 1485 aaKnown RBP eCLIP20.93■□□□□ 0.94
SHROOM1-208ENST00000617339 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
SHROOM1-208ENST00000617339 URB2Q14146 1524 aaKnown RBP20.9■□□□□ 0.94
SHROOM1-208ENST00000617339 PHLDB1Q86UU1 1377 aa20.89■□□□□ 0.94
SHROOM1-208ENST00000617339 MTUS2Q5JR59 1369 aa20.88■□□□□ 0.93
SHROOM1-208ENST00000617339 DHX57Q6P158 1386 aaKnown RBP20.87■□□□□ 0.93
SHROOM1-208ENST00000617339 RRP7BPQ9NSQ0 103 aa20.86■□□□□ 0.93
SHROOM1-208ENST00000617339 RAB3GAP2Q9H2M9 1393 aa20.84■□□□□ 0.93
SHROOM1-208ENST00000617339 GAPVD1Q14C86 1478 aa20.82■□□□□ 0.92
SHROOM1-208ENST00000617339 CHMP7Q8WUX9 453 aaPredicted RBP20.82■□□□□ 0.92
SHROOM1-208ENST00000617339 TRIM52Q96A61 297 aa20.82■□□□□ 0.92
SHROOM1-208ENST00000617339 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
SHROOM1-208ENST00000617339 DNMBPQ6XZF7 1577 aa20.8■□□□□ 0.92
SHROOM1-208ENST00000617339 ZNF777Q9ULD5 760 aaPredicted RBP20.78■□□□□ 0.92
SHROOM1-208ENST00000617339 ABCA10Q8WWZ4 1543 aa20.75■□□□□ 0.91
SHROOM1-208ENST00000617339 FHAD1B1AJZ9 1412 aa20.75■□□□□ 0.91
SHROOM1-208ENST00000617339 SUPT16HQ9Y5B9 1047 aaKnown RBP20.74■□□□□ 0.91
SHROOM1-208ENST00000617339 CNGB1Q14028 1251 aaPredicted RBP20.73■□□□□ 0.91
SHROOM1-208ENST00000617339 LRRC9Q6ZRR7 1453 aa20.72■□□□□ 0.91
SHROOM1-208ENST00000617339 BCL11AQ9H165 835 aa20.71■□□□□ 0.91
SHROOM1-208ENST00000617339 DDX10Q13206 875 aaKnown RBP20.7■□□□□ 0.9
SHROOM1-208ENST00000617339 MYT1LQ9UL68 1186 aa20.7■□□□□ 0.9
SHROOM1-208ENST00000617339 FOXD1Q16676 465 aa20.69■□□□□ 0.9
SHROOM1-208ENST00000617339 RRBP1Q9P2E9 1410 aaKnown RBP20.68■□□□□ 0.9
SHROOM1-208ENST00000617339 BCANQ96GW7 911 aa20.67■□□□□ 0.9
SHROOM1-208ENST00000617339 ANP32EQ9BTT0 268 aa20.66■□□□□ 0.9
SHROOM1-208ENST00000617339 ZNF608Q9ULD9 1512 aaPredicted RBP20.66■□□□□ 0.9
SHROOM1-208ENST00000617339 TSHZ2Q9NRE2 1034 aa20.65■□□□□ 0.9
SHROOM1-208ENST00000617339 SETD5Q9C0A6 1442 aa20.65■□□□□ 0.9
SHROOM1-208ENST00000617339 PCF11O94913 1555 aaKnown RBP20.64■□□□□ 0.89
SHROOM1-208ENST00000617339 TIAM1Q13009 1591 aa20.63■□□□□ 0.89
SHROOM1-208ENST00000617339 LAMC3Q9Y6N6 1575 aa20.63■□□□□ 0.89
SHROOM1-208ENST00000617339 KCNH8Q96L42 1107 aa20.63■□□□□ 0.89
SHROOM1-208ENST00000617339 KIF21AQ7Z4S6 1674 aa20.61■□□□□ 0.89
SHROOM1-208ENST00000617339 ZNF644Q9H582 1327 aaPredicted RBP20.59■□□□□ 0.89
SHROOM1-208ENST00000617339 FMN1Q68DA7 1419 aa20.59■□□□□ 0.89
SHROOM1-208ENST00000617339 PRDM2Q13029 1718 aa20.58■□□□□ 0.89
SHROOM1-208ENST00000617339 CASKIN1Q8WXD9 1431 aa20.54■□□□□ 0.88
SHROOM1-208ENST00000617339 ZNF326Q5BKZ1 582 aaKnown RBP20.53■□□□□ 0.88
SHROOM1-208ENST00000617339 POLR3GLQ9BT43 218 aa20.52■□□□□ 0.88
SHROOM1-208ENST00000617339 TONSLQ96HA7 1378 aa20.48■□□□□ 0.87
SHROOM1-208ENST00000617339 CLSPNQ9HAW4 1339 aa20.47■□□□□ 0.87
SHROOM1-208ENST00000617339 FGD6Q6ZV73 1430 aa20.47■□□□□ 0.87
SHROOM1-208ENST00000617339 MRC2Q9UBG0 1479 aa20.47■□□□□ 0.87
SHROOM1-208ENST00000617339 JPH4Q96JJ6 628 aa20.45■□□□□ 0.86
SHROOM1-208ENST00000617339 PTPRKQ15262 1439 aa20.45■□□□□ 0.86
SHROOM1-208ENST00000617339 CDK13Q14004 1512 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-208ENST00000617339 NCOA2Q15596 1464 aa20.44■□□□□ 0.86
SHROOM1-208ENST00000617339 FYCO1Q9BQS8 1478 aa20.43■□□□□ 0.86
SHROOM1-208ENST00000617339 CFDP1Q9UEE9 299 aaPredicted RBP20.41■□□□□ 0.86
SHROOM1-208ENST00000617339 SNAPC4Q5SXM2 1469 aa20.4■□□□□ 0.86
SHROOM1-208ENST00000617339 CDK11AQ9UQ88 783 aaPredicted RBP20.4■□□□□ 0.86
SHROOM1-208ENST00000617339 GRIN2BQ13224 1484 aa20.4■□□□□ 0.86
SHROOM1-208ENST00000617339 PPP1R15AO75807 674 aaPredicted RBP20.38■□□□□ 0.85
SHROOM1-208ENST00000617339 CUL7Q14999 1698 aa20.38■□□□□ 0.85
SHROOM1-208ENST00000617339 SLC4A1APQ9BWU0 796 aaKnown RBP20.36■□□□□ 0.85
SHROOM1-208ENST00000617339 SENP3-EIF4A1A0A087X0R7 540 aa20.35■□□□□ 0.85
SHROOM1-208ENST00000617339 FKBP8Q14318 412 aa20.35■□□□□ 0.85
SHROOM1-208ENST00000617339 EFCAB5A4FU69 1503 aa20.34■□□□□ 0.85
SHROOM1-208ENST00000617339 MYOM3Q5VTT5 1437 aa20.34■□□□□ 0.85
SHROOM1-208ENST00000617339 ABCA5Q8WWZ7 1642 aa20.33■□□□□ 0.85
SHROOM1-208ENST00000617339 MAPKBP1O60336 1514 aa20.32■□□□□ 0.84
SHROOM1-208ENST00000617339 CCDC18Q5T9S5 1454 aa20.32■□□□□ 0.84
SHROOM1-208ENST00000617339 TARBP1Q13395 1621 aaKnown RBP20.31■□□□□ 0.84
SHROOM1-208ENST00000617339 MPHOSPH9Q99550 1183 aa20.31■□□□□ 0.84
SHROOM1-208ENST00000617339 PLEKHD1A6NEE1 506 aa20.31■□□□□ 0.84
SHROOM1-208ENST00000617339 WDR97A6NE52 1622 aa20.29■□□□□ 0.84
SHROOM1-208ENST00000617339 CTTNBP2Q8WZ74 1663 aa20.29■□□□□ 0.84
SHROOM1-208ENST00000617339 PRG4Q92954 1404 aaPredicted RBP20.29■□□□□ 0.84
SHROOM1-208ENST00000617339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.27■□□□□ 0.843e-8■■■■□ 21
SHROOM1-208ENST00000617339 IFT140Q96RY7 1462 aa20.27■□□□□ 0.83
SHROOM1-208ENST00000617339 MAGI3Q5TCQ9 1506 aa20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 KDM2AQ9Y2K7 1162 aa20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 PLB1Q6P1J6 1458 aa20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 HNRNPMP52272 730 aaKnown RBP eCLIP20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 IQGAP2Q13576 1575 aa20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 MAP3K1Q13233 1512 aa20.26■□□□□ 0.83
SHROOM1-208ENST00000617339 L3MBTL2Q969R5 705 aa20.25■□□□□ 0.83
SHROOM1-208ENST00000617339 ANP32CO43423 234 aa20.24■□□□□ 0.83
SHROOM1-208ENST00000617339 NAIPQ13075 1403 aa20.23■□□□□ 0.83
SHROOM1-208ENST00000617339 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
SHROOM1-208ENST00000617339 RBM19Q9Y4C8 960 aaKnown RBP20.19■□□□□ 0.82
SHROOM1-208ENST00000617339 GRIN2AQ12879 1464 aa20.18■□□□□ 0.82
SHROOM1-208ENST00000617339 HSPA5P11021 654 aaKnown RBP20.17■□□□□ 0.82
SHROOM1-208ENST00000617339 CFAP43Q8NDM7 1665 aa20.17■□□□□ 0.82
SHROOM1-208ENST00000617339 NEFLP07196 543 aa20.16■□□□□ 0.82
SHROOM1-208ENST00000617339 TSPY4P0CV99 314 aa20.15■□□□□ 0.82
SHROOM1-208ENST00000617339 TSPY10P0CW01 314 aa20.15■□□□□ 0.82
SHROOM1-208ENST00000617339 KIAA0586Q9BVV6 1533 aa20.15■□□□□ 0.82
SHROOM1-208ENST00000617339 RGL3Q3MIN7 710 aa20.15■□□□□ 0.82
SHROOM1-208ENST00000617339 ADAMTS12P58397 1594 aa20.14■□□□□ 0.81
SHROOM1-208ENST00000617339 HFM1A2PYH4 1435 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms